메뉴 건너뛰기




Volumn 293, Issue 2, 1999, Pages 333-342

Protein folds, functions and evolution

Author keywords

Enzymes; Protein evolution; Protein folds; Protein function; Protein structure

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; DATA BASE; GENOME; HUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FOLDING; PROTEIN STRUCTURE;

EID: 0032698873     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.3054     Document Type: Article
Times cited : (141)

References (35)
  • 3
    • 0032568596 scopus 로고    scopus 로고
    • Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
    • Brenner S. E., Chothia C., Hubbard T. J. Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships. Proc. Natl Acad. Sci. 26:1998;6073-6078.
    • (1998) Proc. Natl Acad. Sci. , vol.26 , pp. 6073-6078
    • Brenner, S.E.1    Chothia, C.2    Hubbard, T.J.3
  • 4
    • 0027122748 scopus 로고
    • One thousand families for the molecular biologist
    • Chothia C. One thousand families for the molecular biologist. Nature. 357:1993;543-544.
    • (1993) Nature , vol.357 , pp. 543-544
    • Chothia, C.1
  • 5
    • 0031666414 scopus 로고    scopus 로고
    • Analogous enzymes: Independent inventions in enzyme evolution
    • Galperin M. Y., Walker D. R., Koonon E. V. Analogous enzymes: independent inventions in enzyme evolution. Genome. Res. 8:1998;779-790.
    • (1998) Genome. Res. , vol.8 , pp. 779-790
    • Galperin, M.Y.1    Walker, D.R.2    Koonon, E.V.3
  • 6
    • 0031565915 scopus 로고    scopus 로고
    • A structural census of genomes: Comparing eukaryotic, bacterial and archaeal genomes in terms of protein structure
    • Gerstein M. A structural census of genomes: comparing eukaryotic, bacterial and archaeal genomes in terms of protein structure. J. Mol. Biol. 274:1997;562-576.
    • (1997) J. Mol. Biol. , vol.274 , pp. 562-576
    • Gerstein, M.1
  • 7
    • 0033597176 scopus 로고    scopus 로고
    • The relationship between protein structure and function: A comprehensive survey with application to the yeast genome
    • Hegyi H., Gerstein M. The relationship between protein structure and function: a comprehensive survey with application to the yeast genome. J. Mol. Biol. 288:1999;147-164.
    • (1999) J. Mol. Biol. , vol.288 , pp. 147-164
    • Hegyi, H.1    Gerstein, M.2
  • 9
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm L., Sander C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233:1993a;123-138.
    • (1993) J. Mol. Biol. , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 11
    • 0029785147 scopus 로고    scopus 로고
    • Mapping the protein universe
    • Holm L., Sander C. Mapping the protein universe. Science. 273:1996;595-602.
    • (1996) Science , vol.273 , pp. 595-602
    • Holm, L.1    Sander, C.2
  • 12
    • 0032189646 scopus 로고    scopus 로고
    • Dictionary of recurrent domains in protein structures
    • Holm L., Sander C. Dictionary of recurrent domains in protein structures. Proteins: Struct. Funct. Genet. 33:1998;88-96.
    • (1998) Proteins: Struct. Funct. Genet. , vol.33 , pp. 88-96
    • Holm, L.1    Sander, C.2
  • 13
    • 0028891784 scopus 로고
    • Identification and analysis of domains in proteins
    • Islam S. A., Luo J., Sternberg M. J. E. Identification and analysis of domains in proteins. Protein Eng. 8:1995;513-525.
    • (1995) Protein Eng. , vol.8 , pp. 513-525
    • Islam, S.A.1    Luo, J.2    Sternberg, M.J.E.3
  • 15
    • 0031889752 scopus 로고    scopus 로고
    • Domain assignment for protein structures using a consensus approach: Characterisation and analysis
    • Jones S., Stewart M., Michie A. D., Swindells M. B., Orengo C. A., Thornton J. M. Domain assignment for protein structures using a consensus approach: characterisation and analysis. Protein Sci. 7:1998;233-242.
    • (1998) Protein Sci. , vol.7 , pp. 233-242
    • Jones, S.1    Stewart, M.2    Michie, A.D.3    Swindells, M.B.4    Orengo, C.A.5    Thornton, J.M.6
  • 16
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis P. J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24:1991;946-950.
    • (1991) J. Appl. Crystallog. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 17
    • 0017309766 scopus 로고
    • Structural patterns in globular proteins
    • Levitt M., Chothia C. Structural patterns in globular proteins. Nature. 261:1976;552-558.
    • (1976) Nature , vol.261 , pp. 552-558
    • Levitt, M.1    Chothia, C.2
  • 19
    • 0030595369 scopus 로고    scopus 로고
    • Analysis of domain structural class using an automated class assignment tool
    • Michie A. D., Orengo C. A., Thornton J. M. Analysis of domain structural class using an automated class assignment tool. J. Mol. Biol. 262:1996;168-185.
    • (1996) J. Mol. Biol. , vol.262 , pp. 168-185
    • Michie, A.D.1    Orengo, C.A.2    Thornton, J.M.3
  • 20
    • 0031762430 scopus 로고    scopus 로고
    • Sequences annotated by structure: A tool to facilitate use of structural information in sequence analysis
    • Milburn D., Laskowski R. A., Thornton J. M. Sequences annotated by structure: a tool to facilitate use of structural information in sequence analysis. Protein. Eng. 11:1998;855-859.
    • (1998) Protein. Eng. , vol.11 , pp. 855-859
    • Milburn, D.1    Laskowski, R.A.2    Thornton, J.M.3
  • 21
    • 0031766401 scopus 로고    scopus 로고
    • HOMSTRAD: A database of protein structure alignments for homologous families
    • Mizuguchi K., Deane C. A., Blundell T. L., Overington J. P. HOMSTRAD: a database of protein structure alignments for homologous families. Protein Sci. 7:1998;2469-2471.
    • (1998) Protein Sci. , vol.7 , pp. 2469-2471
    • Mizuguchi, K.1    Deane, C.A.2    Blundell, T.L.3    Overington, J.P.4
  • 22
    • 0032104477 scopus 로고    scopus 로고
    • How far divergent evolution goes in proteins
    • Murzin A. G. How far divergent evolution goes in proteins. Curr. Opin. Struct. Biol. 8:1998;380-387.
    • (1998) Curr. Opin. Struct. Biol. , vol.8 , pp. 380-387
    • Murzin, A.G.1
  • 23
    • 0028961335 scopus 로고
    • SCOP: A structural classification of the protein database for the investigation of sequence and structures
    • Murzin A. G., Brenner S. E., Hubbard T., Chothia C. SCOP: a structural classification of the protein database for the investigation of sequence and structures. J. Mol. Biol. 247:1995;536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 24
    • 0003450992 scopus 로고
    • New York: Academic Press
    • Enzyme Nomenclature. 1992;Academic Press, New York.
    • (1992) Enzyme Nomenclature
  • 25
    • 0028593509 scopus 로고
    • Protein superfamilies and domain superfolds
    • Orengo C. A., Jones D. T., Thornton J. M. Protein superfamilies and domain superfolds. Nature. 372:1994;631-634.
    • (1994) Nature , vol.372 , pp. 631-634
    • Orengo, C.A.1    Jones, D.T.2    Thornton, J.M.3
  • 28
    • 0033574401 scopus 로고    scopus 로고
    • Correlation of observed fold frequency with the occurrence of local structural motifs
    • Salem G. M., Hutchinson E. G., Orengo C. A., Thornton J. M. Correlation of observed fold frequency with the occurrence of local structural motifs. J. Mol. Biol. 287:1999;969-981.
    • (1999) J. Mol. Biol. , vol.287 , pp. 969-981
    • Salem, G.M.1    Hutchinson, E.G.2    Orengo, C.A.3    Thornton, J.M.4
  • 29
    • 0028943588 scopus 로고
    • Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions
    • Siddiqui A. S., Barton G. J. Continuous and discontinuous domains: an algorithm for the automatic generation of reliable protein domain definitions. Protein Sci. 4:1995;872-884.
    • (1995) Protein Sci. , vol.4 , pp. 872-884
    • Siddiqui, A.S.1    Barton, G.J.2
  • 30
    • 0030348027 scopus 로고    scopus 로고
    • A database of globular protein structural domains: Clustering of representative family members into similar folds
    • Sowdhamini R., Rufino S. D., Blundell T. L. A database of globular protein structural domains: clustering of representative family members into similar folds. Fold. Design. 1:1996;209-220.
    • (1996) Fold. Design , vol.1 , pp. 209-220
    • Sowdhamini, R.1    Rufino, S.D.2    Blundell, T.L.3
  • 31
    • 0028937153 scopus 로고
    • A procedure for detecting structural domains in proteins
    • Swindells M. B. A procedure for detecting structural domains in proteins. Protein Sci. 4:1995;103-112.
    • (1995) Protein Sci. , vol.4 , pp. 103-112
    • Swindells, M.B.1
  • 32
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov R. L., Koonin E. V., Lipman D. J. A genomic perspective on protein families. Science. 278:1997;631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 33
    • 0024349252 scopus 로고
    • Protein structure alignment
    • Taylor W. R., Orengo C. A. Protein structure alignment. J. Mol. Biol. 208:1989;208-229.
    • (1989) J. Mol. Biol. , vol.208 , pp. 208-229
    • Taylor, W.R.1    Orengo, C.A.2
  • 34
    • 0032424307 scopus 로고    scopus 로고
    • Structural assignments to the proteins of Mycoplasma genitalium show that they have been formed by extensive gene duplications and domain rearrangements
    • Teichmann S., Park J., Chothia C. Structural assignments to the proteins of Mycoplasma genitalium show that they have been formed by extensive gene duplications and domain rearrangements. Proc. Natl Acad. Sci. USA. 95:1998;14658-14663.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 14658-14663
    • Teichmann, S.1    Park, J.2    Chothia, C.3
  • 35
    • 0030724039 scopus 로고    scopus 로고
    • TESS: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases: Application to enzyme active-sites
    • Wallace A. C., Borkakorti N., Thornton J. M. TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases: application to enzyme active-sites. Protein Sci. 6:1997;2308-2323.
    • (1997) Protein Sci. , vol.6 , pp. 2308-2323
    • Wallace, A.C.1    Borkakorti, N.2    Thornton, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.