Synthesis and characterization of the diastereomers Λ- and Δ-[Ru(bpy) 2(m-bpy-L-Arg-Gly-L-Asn-L-Ala-L-His-L-Glu-L-Arg)] Cl 2: 1H NMR studies on their interactions with the deoxynucleotide duplex d[(5′-GCGCTTAAGCGC-3′) 2] and d[(5′-CGCGATCGCG-3′) 2]

Journal of Inorganic Biochemistry

Volumn 99, Issue 2, 2005, Pages 616-626

  Myari, Alexandra ^a   Hadjiliadis, Nick ^a   Garoufis, Achilleas ^a  

^a UNIVERSITY OF IOANNINA   (Greece)

Author keywords

Chimeric complexes; Metallopeptides; Oligonucleotide; Ru(II) complexes

Indexed keywords

DEOXYRIBONUCLEOTIDE; PALINDROMIC DNA; PEPTIDE DERIVATIVE; PYRIDINE DERIVATIVE; RESTRICTION ENDONUCLEASE;

AMINO ACID SEQUENCE; ARTICLE; BINDING AFFINITY; BINDING KINETICS; COMPLEX FORMATION; DIASTEREOISOMER; DNA BINDING; INORGANIC CHEMISTRY; ISOMER; MOLECULAR INTERACTION; MOLECULAR RECOGNITION; MYCOPLASMA; NUCLEOTIDE BINDING SITE; NUCLEOTIDE SEQUENCE; PROTEIN BINDING; PROTEIN DEGRADATION; PROTON NUCLEAR MAGNETIC RESONANCE; SEQUENCE ANALYSIS; SYNTHESIS;

BASE SEQUENCE; BINDING SITES; CIRCULAR DICHROISM; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; MAGNETIC RESONANCE SPECTROSCOPY; METALLOPROTEINS; MOLECULAR STRUCTURE; MYCOPLASMA; OLIGODEOXYRIBONUCLEOTIDES; RUTHENIUM; STEREOISOMERISM;

MYCOPLASMA;

EID: 11144298121     PISSN: 01620134     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2004.11.010     Document Type: Article

References (46)

1. G.M. Blackburn M.J. Gait Nucleic Acids in Chemistry and Biology 1996 Oxford University Press Inc New York
2. M.L. Kopka, C. Yoon, D. Goddsell, P. Pjura, and R.E. Dickerson Proc. Nat. Acad. Sci. USA 82 1985 1376 1380
3. M. Coll, C.A. Frederick, A.H.-J. Wang, and A. Rich Proc. Nat. Acad. Sci. USA 84 1987 8385 8389
4. M.S. Searle, and K.J. Embrey Nucl. Acid. Res. 18 1990 3753 3762
5. W. Leupin, W.J. Chazin, S. Hyberts, W.A. Denny, and K. Wuthrich Biochemistry 25 1986 5902 5910
6. W.D. Wilson, C.R. Krishnamoorthy, Y.-H. Wang, and J.C. Smith Biopolymers 24 1985 1941 1961
7. C.A. Frederick, L.D. Williams, G. Ughetto, G.A. Van der Marel, J.H. Van Boom, A. Rich, and A.H.-J. Wang Biochemistry 29 1990 2538 2549
8. A.H.-J. Wang, G. Ughetto, G.J. Quigley, and A. Rich Biochemistry 26 1987 1152 1163
9. M. Newman, K. Lunnen, G. Wilson, J. Greci, I. Schildkraut, and S.E.V. Phillips EMBO J. 17 1998 5466 5476
10. F.K. Winkler, D.W. Banner, C. Oefner, D. Tsernoglou, P.S. Brown, S.P. Heathman, R.K. Bryan, P.D. Martin, K. Petratos, and K.S. Wilson EMBO J. 5 1993 1781 1795
11. M. Newman, T. Strzelecka, L.F. Dorner, I. Schildkraut, and A.K. Aggarwal Science 269 1995 656 663
12. B. Cuenoud, and A. Schepartz Science 259 1993 510 513
13. T. Morii, M. Simomura, S. Morimoto, and J. Saito J. Am. Chem. Soc. 115 1993 1150 1151
14. M.F. Bruist, S.J. Horvath, L.E. Hood, T.A. Steitz, and M.I. Simon Science 235 1987 777 780
15. B.M. Peek, G.T. Ross, S.W. Edwards, G.J. Meyer, T.J. Meyer, and B.W. Erickson Int. J. Peptide Protein Res. 38 1991 114 123
16. K.D. Copeland, A.M.K. Lueras, E.D.A. Stemp, and J.K. Barton Biochemistry 41 2002 12785 12797
17. K.D. Copeland, M.P. Fitzsimons, R.P. Houser, and J.K. Barton Biochemistry 41 2002 343 356
18. H.A. Wagenknecht, E.D.A. Stemp, and J.K. Barton J. Am. Chem. Soc. 122 2000 1 7
19. A. Myari, A. Garoufis, and N. Hadjiliadis Eur. J. Inorg. Chem. 2004 1427 1439
20. N.Y. Sardesai, K. Zimmerman, and J.K. Barton J. Am. Chem. Soc. 116 1994 7502 7508
21. N.Y. Sardesai, and J.K. Barton J. Biol. Inorg. Chem. 2 1997 762 771
22. A. Myari, A. Garoufis, N. Hadjiliadis, Bioinorg. Chem. Appl., in press
23. J.G. Collins, A.D. Sleeman, J.R. Aldrich-Wright, I. Greguric, and T.W. Hambley Inorg. Chem. 37 1998 3133 3141
24. F.M. Foley, F.R. Keene, and J.G. Collins J. Chem. Soc. Dalton Trans. 2001 2968 2974
25. J.P. Rehmann, and J.K. Barton Biochemistry 29 1990 1701 1709
26. M. Deibert, S. Grazulis, A. Janulaitis, V. Siksnys, and R. Huber The EMBO J. 18 1999 5805 5816
27. A. Garoufis, J.G. Liu, L.N. Ji, and N. Hadjiliadis J. Inorg. Biochem. 93 2003 221 234
28. A. Garoufis, A. Koutsodimou, N. Katsaros, C.A. Mitsopoulou, and N. Hadjiliadis Polyhedron 18 1999 361 369
29. R.M. Scheek, R. Boelens, N. Russo, J.H. Van Boom, and R. Kaptein Biochemistry 23 1984 1371 1376
30. J. Feigon, W. Leupin, W.A. Denny, and D.R. Kearns Biochemistry 22 1983 5943 5951
31. D.J. Patel, L. Shapiro, and D. Hare J. Biol. Chem. 261 1986 1223 1229
32. M.P. Singh, B. Plouvier, G.C. Hill, J. Gueck, R.T. Pon, and J.W. Lown J. Am. Chem. Soc. 116 1994 7006 7020
33. M.V. Keck, R.A. Manderville, and S.M. Hecht J. Am. Chem. Soc. 123 2001 8690 8700
34. C. Bailly, and J.B. Chaires Bioconjugate Chem. 9 1998 513 538
35. P. Lincoln, and B. Norden J. Phys. Chem. B 102 1998 9583 9594
36. W.D. Wilson, Y. Li, and J.M. Veal L.H. Hurley Advances in DNA Sequence Specific Agents vol. 1 1992 J.A.I. Press Inv. Connecticut
37. F.M. Foley, F.R. Keene, and J.G. Collins J. Chem. Soc. Dalton Trans. 2001 2968 2974
38. D.J. Patel, and L. Shapiro J. Biol. Chem. 261 1986 1230 1240
39. R.E. Klevit, D.E. Wemmer, and B.R. Reid Biochemistry 25 1986 3296 3303
40. C.M. Dupureur, and J.K. Barton Inorg. Chem. 36 1997 33 44
41. E.M. Proudfoot, J.P. Mackay, R.S. Vagg, K.A. Vickery, P.A. Williams, and P. Karuso Chemm. Commun. 1997 1623 1624
42. S. Neidle DNA Structure and Recognition 1994 IRL Press Oxford
43. M. Eriksson, M. Leijon, C. Hiort, B. Norden, and A. Graslund Biochemistry 33 1994 5031 5040
44. A. Pingoud, and A. Jeltsch Nucleic Acids Res. 29 2001 3705 3727
45. P.N. Borer G.D. Fasman Handbook of Biochemistry and Molecular Biology 1975 CRC Cleveland 589 590
46. T.-L. Hwang, and A.J. Shaka J. Magn. Reson. Series A 112 1995 275 279