Label-free detection of nucleic acid and protein microarrays by scanning Kelvin nanoprobe

Biosensors and Bioelectronics

Volumn 20, Issue 8 SPEC. ISS., 2005, Pages 1471-1481

  Thompson, Michael ^a   Cheran, Larisa Emilia ^a   Zhang, Mingquan ^a   Chacko, Melissa ^a   Huo, Hong ^a   Sadeghi, Saman ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

Label free detection; Nucleic acid and protein microarrays; Scanning Kelvin nanoprobe; Work function

Indexed keywords

ANTIGENS; BIOCHEMISTRY; MASS SPECTROMETRY; NANOTECHNOLOGY; PROTEINS; REACTION KINETICS;

ANTIBODY-ANTIGEN INTERACTION; HYBRIDIZATION; MICROARRAYS;

NUCLEIC ACIDS;

DYE; GOLD; INTERCALATING AGENT; NUCLEIC ACID; SULFUR;

ANTIGEN ANTIBODY REACTION; CHEMICAL LABELING; CHEMICAL STRUCTURE; CONFERENCE PAPER; ELECTRIC FIELD; ELECTRIC POTENTIAL; EXAMINATION; FILM; FLUORESCENCE; IONIZING RADIATION; MASS SPECTROMETRY; MOLECULE; NUCLEIC ACID ANALYSIS; NUCLEIC ACID HYBRIDIZATION; PHYSICAL CHEMISTRY; PROTEIN MICROARRAY; REPRODUCIBILITY; SCANNING PROBE MICROSCOPY; SENSITIVITY ANALYSIS; SURFACE PROPERTY;

EID: 11144239969     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2004.06.022     Document Type: Conference Paper

References (46)

1. Aguilar Z.P., Vandaveer W.R., Fritsch I. Self-contained microelectrochemical immunoassay for small volumes using mouse IgG as a model system. Anal. Chem. 74:2002;3324
2. Albers, W.M., Vikholm, I., Viitala, T., Peltonen, J., 2001. In: Nalwa, H.S. (Ed.), Handbook of Surfaces and Interfaces of Materials, vol. 5, Academic Press, p. 130.
3. Bergveld P., Hendrikse J., Olthuis W. Theory and application of the material work function for chemical sensors based on the electric field principles. Meas. Sci. Technol. 9:1998;1801-1808
4. Boon E.M., Salas J.E., Barton J.K. An electrical probe of protein-DNA interactions on DNA-modified surfaces. Nature Biotec. 20:2002;282-286
5. Calladine, C.R., Drew, H., 1997. Understanding DNA. The Molecule and How It Works. Academic Press, San Diego.
6. Cheran L.-E., Liess H.-D., Thompson M. Scanning Kelvin microprobe in tandem analysis of surface topography and chemistry. The Analyst. 124:1999;961-970
7. Cheran L.-E., McGovern M.E., Thompson M. Surface immobilized biochemical macromolecules studied by scanning Kelvin microprobe. Faraday Discuss. 116:2000;23-34
8. Cheran, L.-E., Lam, P., Zheng, Z., Boggs, S., Thompson, M., 2003a. Characterization of dielectric materials using a high-resolution scanning Kelvin microprobe. In: Annual Report of the IEEE Conference on Electrical Insulation and Dielectric Phenomena, pp. 16-19.
9. Cheran L.-E., Vukovich D., Thompson M. Imaging TOF-SIMS analysis of oligonucleotide microarrays. The Analyst. 128:2003;126-129
10. Cheran L.-E., Chacko M., Zhang M., Thompson M. Protein microarray scanning in label-free format by Kelvin nanoprobe. The Analyst. 129:2004;161-168
11. Cheran L.-E., Thompson M. Submicrometer image of metal surface corrosion by scanning Kelvin nanoprobe. Analyst. 129:2004;406-409
12. DeRisi J.L., Iyer V.R., Brown P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278:1997;680
13. Duchesne, J., 1973. Physico-chemical Properties of Nucleic acids. Academic Press, London.
14. Eickhoff H., Konthur Z., Lueking A., Lehrach H., Walter G., Nordhoff E., Nyarsik L., Bussow K. Protein array technology: the tool to bridge genomics and proteomics. Adv. Biochem. Eng. Biotechnol. 77:2002;103-112
15. Fink H.-W., Schönenberger C. Electrical conduction through DNA molecules. Nature. 398:1999;407
16. Fung, E.T., 2004. Protein Arrays Methods and Protocols. Humana Press.
17. Furtado M., Su H., Thompson M., Mack D., Hayward G. Interactions of HIV-1 TAR RNA with Tat-derived peptides discriminated by online acoustic wave detector. Anal. Chem. 71:1999;1167
18. Gerhold D., Rushmore T., Caskey C.T. DNA chips: promising toys have become powerful tools. Trends Biochem. 24:1999;168
19. Hansen D.C., Hansen K.M., Ferrell T.L., Thundat T. Discerning biomolecular interactions using Kelvin probe technology. Langmuir. 19:2003;7514-7520
20. Hartwick G., Caruana D.J., de Lumley-Woodyear T., Wu Y., Campbell C.N., Heller A. Electrochemical study of electron transport through thin DNA. J. Am. Chem. Soc. 121:1999;10803-10812
21. Heller A. On the hypothesis of cathodic protection of genes. Faraday Discuss. 116:2000;1-13
22. Ji, S.C., 2000. Free energy and information contents of conformons in proteins and DNA. Biosystems 54 (3).
23. Kambhampati, D., 2003. Protein Microarray Technology. Wiley.
24. Kelley S.O., Boon E.M., Barton J.K., Jackson N.M., Hill M.G. Single-base mismatch detection based on charge transduction through DNA. Nucleic Acids Res. 27(24):1999;4830-4837
25. Kumble K.D. Protein microarrays: new tools for pharmaceutical development. Anal. Bioanal. Chem. 377(5):2003;812-819
26. Lehninger, A.L., Nelson, D.C., Cox, M.M., 2000. Principles of Biochemistry, 3rd ed. Freeman, New York.
27. MacBeath G., Schreiber S.S. Printing proteins as microarrays for high-throughput function determination. Science. 289:2000;1760
28. Marshall A., Hodgson J. DNA chips: an array of possibilities. J. Nature Biotechnol. 16:1997;27-31
29. Okahata Y., Kobayashi T., Tanaka K., Shimomura M. Anisotropic electric conductivity in an aligned DNA cast film. J. Am. Chem. Soc. 120:1998;6165-6166
30. Porath D., Bezryadin A., De Vries S., Dekker C. Direct measurement of electrical transport through DNA molecules. Nature. 403:2000;636-638
31. Prasad B., Lal R. A capacitive immunosensor measurement system with a lock-in amplifier and potentiostatic control by software. Meas. Sci. Technol. 10:1999;1097
32. Rampal, J.B. (Ed.), 2001. DNA Arrays, Methods and Protocols. Humana Press, New Jersey.
33. Robinson W.H., Di Genaro C., Hueber W., Haab B.B., Kamachi M., Dean E.J., Fournel S., Fong D., Genovese M.C., Neuman de Vegvar H.E., Skriner K., Hirschberg D.L., Morris R.I., Muller S., Prujin G.I., van Venrooij W.J., Smolen J.S., Brown P.O., Steinman L., Utz P.L. Autoantigen microarrays for multiplex characterization of autoantibody responses. Nat. Med. 8(3):2002;295-301
34. Saenger, W., 1984. Principles of Nucleic Acid Structure. Springer Verlag.
35. Schena, M., 2003. Microarray Analysis. Wiley, New Jersey.
36. Sosnowski R.G., Eu E., Buttleer W., O'Connell J.P., Heller M.J. Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control. Proc. Natl. Acad. Sci. U.S.A. 94:1997;1119-1123
37. Stoll D., Templin M.F., Schrenk M., Traub P.C., Vöhringer C.F., Joos T.O. Protein microarray technology. Front. Biosci. 7:2002;C13-C32
38. Stryer, L., 1995. Biochemistry, 4th ed. Freeman, New York.
39. Takashima, S., 1963. Dielectric dispersion of DNA, J. Mol. Biol., 455-467.
40. Takashima, S., Dielectric properties of proteins. In: Leach, S. (Ed.), Physical Principles and Techniques of Protein Chemistry, Academic Press, New York, pp. 291-293.
41. Thompson, M., Stone, D.C., 1997. Surface Acoustic Wave Sensors. Wiley, New York.
42. Wang J., Bard A. Monitoring DNA immobilization and hybridization on surfaces by atomic force microscopy measurements. J. Anal. Chem. 73:2001;2207-2212
43. Warrington, J.A., Todd, R., Wong, D., 2002. Microarrays and Cancer Research. BioTechniques Press, Eaton Publishing.
44. Williams T.T., Odom D.T., Barton J.K. Variations in DNA charge transport with nucleotide composition and sequence. J. Am. Soc. 122:2000;9048-9049
45. Wilson D.S., Nock S. Recent developments in protein microarray technology. Angew. Chem. Int. Ed. 42(5):2003;494
46. Yakushevich, L.V., 1998. Nonlinear Physics of DNA. Wiley.