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2
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0032815627
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Mapping regulatory networks in microbial cells
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A useful review of the combined use of proteomics and genomics to map global regulatory networks.
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VanBogelen R.A., Greis K.D., Blumenthal R.M., Tani T.H., Matthews R.G. Mapping regulatory networks in microbial cells. Trends Microbiol. 7:1999;320-328. A useful review of the combined use of proteomics and genomics to map global regulatory networks.
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Trends Microbiol
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Vanbogelen, R.A.1
Greis, K.D.2
Blumenthal, R.M.3
Tani, T.H.4
Matthews, R.G.5
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0031848226
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Proteome and proteomics: New technologies, new concepts, and new words
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Anderson N.L., Anderson N.G. Proteome and proteomics: new technologies, new concepts, and new words. Electrophoresis. 19:1998;1853-1861.
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Anderson, N.L.1
Anderson, N.G.2
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0032784646
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Proteomics: Quantitative and physical mapping of cellular proteins
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Blackstock W.P., Weir M.P. Proteomics: quantitative and physical mapping of cellular proteins. Trends Biotechnol. 17:1999;121-127.
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Trends Biotechnol
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Blackstock, W.P.1
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0033557224
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Yeast forward and reverse 'n'-hybrid systems
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Vidal M., Legrain P. Yeast forward and reverse 'n'-hybrid systems. Nucleic Acids Res. 27:1999;919-929.
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Nucleic Acids Res
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Vidal, M.1
Legrain, P.2
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6
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0032929334
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Towards the recovery of hydrophobic proteins on two-dimensional electrophoresis gels
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Santoni V., Rabilloud T., Doumas P., Rouquié D., Mansion M., Kieffer S., Garin J., Rossignol M. Towards the recovery of hydrophobic proteins on two-dimensional electrophoresis gels. Electrophoresis. 20:1999;705-711.
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Electrophoresis
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Santoni, V.1
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Mansion, M.5
Kieffer, S.6
Garin, J.7
Rossignol, M.8
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0032589276
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Extraction of Escherichia coli proteins with organic solvents prior to two-dimensional electrophoresis
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Molloy M.P., Herbert B.R., Williams K.L., Gooley A.A. Extraction of Escherichia coli proteins with organic solvents prior to two-dimensional electrophoresis. Electrophoresis. 20:1999;701-704.
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Electrophoresis
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Molloy, M.P.1
Herbert, B.R.2
Williams, K.L.3
Gooley, A.A.4
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0032924895
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The potential use of laser capture microdissection to selectively obtain distinct populations of cells for proteomic analysis - preliminary findings
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Banks R.E., Dunn M.J., Forbes M.A. The potential use of laser capture microdissection to selectively obtain distinct populations of cells for proteomic analysis - preliminary findings. Electrophoresis. 20:1999;689-700.
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Electrophoresis
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Banks, R.E.1
Dunn, M.J.2
Forbes, M.A.3
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0033594994
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A method for high-sensitivity peptide sequencing using postsource decay matrix-assisted laser desorption ionization mass spectrometry
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Keough T., Youngquist R.S., Lacey M.P. A method for high-sensitivity peptide sequencing using postsource decay matrix-assisted laser desorption ionization mass spectrometry. Proc Natl Acad Sci USA. 96:1999;7131-7136.
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Proc Natl Acad Sci USA
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Keough, T.1
Youngquist, R.S.2
Lacey, M.P.3
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10
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0032875697
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Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
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The authors describe a new technique that enables the relative quantities of proteins in complex mixtures to be assessed during MS-based protein characterisation.
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Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol. 17:1999;994-999. The authors describe a new technique that enables the relative quantities of proteins in complex mixtures to be assessed during MS-based protein characterisation.
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Nat Biotechnol
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Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
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11
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0033546122
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High-throughput mass spectrometric discovery of protein post-translational modifications
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This paper describes the use of the FindMod database coupled to MS to rapidly identify post-translational modifications.
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Wilkins M.R., Gasteiger E., Gooley A.A., Herbert B.R., Molloy M.P., Binz P.A., Ou K., Sanchez J.C., Bairoch A., Williams K.L., Hochstrasser D.F. High-throughput mass spectrometric discovery of protein post-translational modifications. J Mol Biol. 289:1999;645-657. This paper describes the use of the FindMod database coupled to MS to rapidly identify post-translational modifications.
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J Mol Biol
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Wilkins, M.R.1
Gasteiger, E.2
Gooley, A.A.3
Herbert, B.R.4
Molloy, M.P.5
Binz, P.A.6
Ou, K.7
Sanchez, J.C.8
Bairoch, A.9
Williams, K.L.10
Hochstrasser, D.F.11
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12
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0033051101
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Direct analysis of protein complexes using mass spectrometry
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Link A.J., Eng J., Schieltz D.M., Carmack E., Mize G.J., Morris D.R., Garvik B.M., Yates J.R. III. Direct analysis of protein complexes using mass spectrometry. Nat Biotechnol. 17:1999;676-682.
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Nat Biotechnol
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Link, A.J.1
Eng, J.2
Schieltz, D.M.3
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Mize, G.J.5
Morris, D.R.6
Garvik, B.M.7
Yates J.R., Iii.8
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13
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0032828715
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A generic protein purification method for protein complex characterization and proteome exploration
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Rigaut G., Shevchenko A., Rutz B., Wilm M., Mann M., Séraphin B. A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol. 17:1999;1030-1032.
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Nat Biotechnol
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Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Séraphin, B.6
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15
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0041939641
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A molecular scanner to automate proteomic research and to display proteome images
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A striking example of the levels of automation and high-throughput analysis that can now be achieved through the integration of technologies.
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Binz P-A., Muller M., Walther D., Bienvenut W.V., Gras R., Hoogland C., Bouchet G., Gasteiger E., Fabbretti R., Gay S.et al. A molecular scanner to automate proteomic research and to display proteome images. Anal Chem. 71:1999;4981-4988. A striking example of the levels of automation and high-throughput analysis that can now be achieved through the integration of technologies.
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Anal Chem
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, pp. 4981-4988
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Binz, P.-A.1
Muller, M.2
Walther, D.3
Bienvenut, W.V.4
Gras, R.5
Hoogland, C.6
Bouchet, G.7
Gasteiger, E.8
Fabbretti, R.9
Gay, S.10
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16
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0033968614
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The Yeast Protein Database (YPD) and Caenorhabditis elegans Proteome Database (WormPD): Comprehensive resources for the organization and comparison of model organism protein information
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Costanzo M.C., Hogan J.D., Cusick M.E., Davis B.P., Fancher A.M., Hodges P.E., Kondu P., Lengieza C., Lew-Smith J.E., Linger C.et al. The Yeast Protein Database (YPD) and Caenorhabditis elegans Proteome Database (WormPD): comprehensive resources for the organization and comparison of model organism protein information. Nucleic Acids Res. 28:2000;73-76.
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Nucleic Acids Res
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Costanzo, M.C.1
Hogan, J.D.2
Cusick, M.E.3
Davis, B.P.4
Fancher, A.M.5
Hodges, P.E.6
Kondu, P.7
Lengieza, C.8
Lew-Smith, J.E.9
Linger, C.10
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17
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0033979459
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Two-dimensional map of the proteome of Haemophilus influenzae
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An important addition to the array of proteomics databases currently available, with over 500 proteins identified from a total of over 1000 resolved.
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Langen H., Takacs B., Evers S. Two-dimensional map of the proteome of Haemophilus influenzae. Electrophoresis. 21:2000;411-429. An important addition to the array of proteomics databases currently available, with over 500 proteins identified from a total of over 1000 resolved.
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Electrophoresis
, vol.21
, pp. 411-429
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Langen, H.1
Takacs, B.2
Evers, S.3
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18
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0032935361
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Analysis of the mouse proteome. (I) Brain proteins: Separation by two-dimensional electrophoresis and identification by mass spectrometry and genetic variation
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Gauss C., Kalkum M., Lowe M., Lehrach H., Klose J. Analysis of the mouse proteome. (I) Brain proteins: separation by two-dimensional electrophoresis and identification by mass spectrometry and genetic variation. Electrophoresis. 20:1999;575-600.
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Electrophoresis
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Gauss, C.1
Kalkum, M.2
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Klose, J.5
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19
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85031607975
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Human 2-D PAGE Databases for Proteome Analysis in Health and Disease on World Wide Web URL
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Human 2-D PAGE Databases for Proteome Analysis in Health and Disease on World Wide Web URL: http://biobase.dk/cgi-bin/celis.
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20
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0032924892
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Genotypes and phenotypes
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The implications of the mouse proteome project for our understanding of the relationship between genes and proteins; proteins demonstrated to be polygenic entities with complex phenotypes.
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Klose J. Genotypes and phenotypes. Electrophoresis. 20:1999;643-652. The implications of the mouse proteome project for our understanding of the relationship between genes and proteins; proteins demonstrated to be polygenic entities with complex phenotypes.
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Electrophoresis
, vol.20
, pp. 643-652
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Klose, J.1
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21
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0039846981
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Functional proteomics analysis of signal transduction pathways of the platelet derived growth factor β receptor
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Soskic V., Gorlach M., Poznanovich S., Boehmer F.D., Godovac-Zimmermann J. Functional proteomics analysis of signal transduction pathways of the platelet derived growth factor β receptor. Biochemistry. 38:1999;1757-1764.
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Biochemistry
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Soskic, V.1
Gorlach, M.2
Poznanovich, S.3
Boehmer, F.D.4
Godovac-Zimmermann, J.5
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22
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0033547324
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Identification of in vivo substrates of the chaperonin GroEL
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Houry W.A., Frishman D., Eckerskorn C., Lottspeich F., Hartl F.U. Identification of in vivo substrates of the chaperonin GroEL. Nature. 402:1999;147-154.
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Nature
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Houry, W.A.1
Frishman, D.2
Eckerskorn, C.3
Lottspeich, F.4
Hartl, F.U.5
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0032768869
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Proteomics for genetic and physiological studies in plants
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Thiellement H., Bahrman N., Damerval C. Proteomics for genetic and physiological studies in plants. Electrophoresis. 20:1999;2013-2026.
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Electrophoresis
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, pp. 2013-2026
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Thiellement, H.1
Bahrman, N.2
Damerval, C.3
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0033395759
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Proteome map of the human hippocampus
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Edgar P.F., Douglas J.E., Knight C., Cooper G.J., Faull R.L., Kydd R. Proteome map of the human hippocampus. Hippocampus. 9:1999;644-650.
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Hippocampus
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Edgar, P.F.1
Douglas, J.E.2
Knight, C.3
Cooper, G.J.4
Faull, R.L.5
Kydd, R.6
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25
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0033950615
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Comparative analysis of the hippocampus implicates chromosome 6q in schizophrenia
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Edgar P.F., Douglas J.E., Cooper G.J., Dean B., Kydd R., Faull R.L. Comparative analysis of the hippocampus implicates chromosome 6q in schizophrenia. Mol Psychiatry. 5:2000;85-90.
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Mol Psychiatry
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Edgar, P.F.1
Douglas, J.E.2
Cooper, G.J.3
Dean, B.4
Kydd, R.5
Faull, R.L.6
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26
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0033961734
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Studying heart disease using the proteomic approach
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A useful introductory review of the Harefield group's wide-ranging studies in cardiology.
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Dunn M.J. Studying heart disease using the proteomic approach. Drug Dev Therapeutics. 5:2000;76-84. A useful introductory review of the Harefield group's wide-ranging studies in cardiology.
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Drug Dev Therapeutics
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Dunn, M.J.1
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27
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0033532502
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Subclass specificity of autoantibodies against myosin in patients with idiopathic dilated cardiomyopathy: Pro-inflammatory antibodies in DCM patients
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Warriach R.S., Dunn M.J., Yacoub M.H. Subclass specificity of autoantibodies against myosin in patients with idiopathic dilated cardiomyopathy: pro-inflammatory antibodies in DCM patients. Biochem Biophys Res Commun. 259:1999;255-261.
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Biochem Biophys Res Commun
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Warriach, R.S.1
Dunn, M.J.2
Yacoub, M.H.3
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28
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0032953661
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Bovine dilated cardiomyopathy: Proteomic analysis of an animal model of human dilated cardiomyopathy
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Weekes J., Wheeler C.H., Yan J.X., Weil J., Eschenhagen T., Scholtysik G., Dunn M.J. Bovine dilated cardiomyopathy: proteomic analysis of an animal model of human dilated cardiomyopathy. Electrophoresis. 20:1999;898-906.
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Electrophoresis
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Weekes, J.1
Wheeler, C.H.2
Yan, J.X.3
Weil, J.4
Eschenhagen, T.5
Scholtysik, G.6
Dunn, M.J.7
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29
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0032857401
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Antibodies to endothelial cells identify myocardial damage and predict development of coronary artery disease in patients with transplanted hearts
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Faulk W.P., Rose M., Meroni P.L., Del Papa N., Torry R.J., Labarrere C.A., Busing K., Crisp S.J., Dunn M.J., Nelson D.R. Antibodies to endothelial cells identify myocardial damage and predict development of coronary artery disease in patients with transplanted hearts. Hum Immunol. 60:1999;826-832.
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Hum Immunol
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Faulk, W.P.1
Rose, M.2
Meroni, P.L.3
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Torry, R.J.5
Labarrere, C.A.6
Busing, K.7
Crisp, S.J.8
Dunn, M.J.9
Nelson, D.R.10
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30
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0033564133
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Proteomics and immunohistochemistry define some of the steps involved in the squamous differentiation of the bladder transitional epithelium: A novel strategy for identifying metaplastic lesions
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Antibodies to disease-specific proteins identified using 2DE are used to identify metaplasia and clarify the stages in its development.
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Celis J.E., Celis P., Ostergaard M., Basse B., Lauridsen J.B., Ratz G., Rasmussen H.H., Orntoft T.F., Hein B., Wolf H., Celis A. Proteomics and immunohistochemistry define some of the steps involved in the squamous differentiation of the bladder transitional epithelium: a novel strategy for identifying metaplastic lesions. Cancer Res. 59:1999;3000-3003. Antibodies to disease-specific proteins identified using 2DE are used to identify metaplasia and clarify the stages in its development.
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Cancer Res
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, pp. 3000-3003
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Celis, J.E.1
Celis, P.2
Ostergaard, M.3
Basse, B.4
Lauridsen, J.B.5
Ratz, G.6
Rasmussen, H.H.7
Orntoft, T.F.8
Hein, B.9
Wolf, H.10
Celis, A.11
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31
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0032979025
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Psoriacin (S100A7): A putative urinary marker for the follow-up of patients with bladder squamous cell carcinomas
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One of the best candidates for a clinical disease marker yet produced by proteomics. This paper describes the discovery of this marker in urine of squamous cell carcinoma patients. The protein was identified earlier in keratinocytes.
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Ostergaard M., Wolf H., Orntoft T.F., Celis J.E. Psoriacin (S100A7): a putative urinary marker for the follow-up of patients with bladder squamous cell carcinomas. Electrophoresis. 20:1999;349-354. One of the best candidates for a clinical disease marker yet produced by proteomics. This paper describes the discovery of this marker in urine of squamous cell carcinoma patients. The protein was identified earlier in keratinocytes.
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Electrophoresis
, vol.20
, pp. 349-354
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Ostergaard, M.1
Wolf, H.2
Orntoft, T.F.3
Celis, J.E.4
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32
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13044312108
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Proteomic definition of normal human luminal and myoepithelial breast cells purified from reduction mammoplasties
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The first stage of an ongoing proteomic study of breast cancer focusing on healthy breast tissue and distinguishing individual cell types.
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Page M.J., Amess B., Townsend R.R., Parekh R., Herath A., Brusten L., Zvelebil M.J., Stein R.C., Waterfield M.D., Davies S.C., O'Hare M.J. Proteomic definition of normal human luminal and myoepithelial breast cells purified from reduction mammoplasties. Proc Natl Acad Sci USA. 96:1999;12589-12594. The first stage of an ongoing proteomic study of breast cancer focusing on healthy breast tissue and distinguishing individual cell types.
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Proc Natl Acad Sci USA
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Page, M.J.1
Amess, B.2
Townsend, R.R.3
Parekh, R.4
Herath, A.5
Brusten, L.6
Zvelebil, M.J.7
Stein, R.C.8
Waterfield, M.D.9
Davies, S.C.10
O'Hare, M.J.11
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33
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0033434082
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An integrated proteomic approach to studying glomerular nephrotoxicity
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Cutler P., Bell D.J., Birrell H.C., Connelly J.C., Connor S.C., Holmes E., Mitchell B.C., Monte S.Y., Neville B.A., Pickford R.et al. An integrated proteomic approach to studying glomerular nephrotoxicity. Electrophoresis. 20:1999;3647-3658.
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Electrophoresis
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Cutler, P.1
Bell, D.J.2
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Connelly, J.C.4
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Holmes, E.6
Mitchell, B.C.7
Monte, S.Y.8
Neville, B.A.9
Pickford, R.10
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34
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0032746615
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Alterations in rabbit kidney protein expression following lead exposure as analyzed by two-dimensional gel electrophoresis
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Kanitz M.H., Witzmann F.A., Zhu H., Fultz C.D., Skaggs S., Moorman W.J., Savage R.E. Jr. Alterations in rabbit kidney protein expression following lead exposure as analyzed by two-dimensional gel electrophoresis. Electrophoresis. 20:1999;2977-2985.
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Electrophoresis
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Kanitz, M.H.1
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Moorman, W.J.6
Savage R.E., Jr.7
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0031823995
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New insights into cyclosporine A nephrotoxicity by proteome analysis
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Electrophoresis
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A comparison of liver protein changes in mice and hamsters treated with the peroxisome proliferator Wy-14,643
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