-
1
-
-
0035078979
-
Suboptimal nucleotides in the infectious, pathogenic simian immunodeficiency virus clone SIVmac239
-
Alexander, L., L. Denekamp, S. Czajak, and R. C. Desrosiers. 2001. Suboptimal nucleotides in the infectious, pathogenic simian immunodeficiency virus clone SIVmac239. J. Virol. 75:4019-4022.
-
(2001)
J. Virol.
, vol.75
, pp. 4019-4022
-
-
Alexander, L.1
Denekamp, L.2
Czajak, S.3
Desrosiers, R.C.4
-
2
-
-
0036786482
-
Effects of cytotoxic T lymphocytes (CTL) directed against a single simian immunodeficiency virus (SIV) Gag CTL epitope on the course of SIVmac239 infection
-
Allen, T. M., P. Jing, B. Calore, H. Horton, D. H. O'Connor, T. Hanke, M. Piekarczyk, R. Ruddersdorf, B. R. Mothe, C. Emerson, N. Wilson, J. D. Lifson, I. M. Belyakov, J. A. Berzofsky, C. Wang, D. B. Allison, D. C. Montefiori, R. C. Desrosiers, S. Wolinsky, K. J. Kunstman, J. D. Altman, A. Sette, A. J. McMichael, and D. I. Watkins. 2002. Effects of cytotoxic T lymphocytes (CTL) directed against a single simian immunodeficiency virus (SIV) Gag CTL epitope on the course of SIVmac239 infection. J. Virol. 76:10507-10511.
-
(2002)
J. Virol.
, vol.76
, pp. 10507-10511
-
-
Allen, T.M.1
Jing, P.2
Calore, B.3
Horton, H.4
O'Connor, D.H.5
Hanke, T.6
Piekarczyk, M.7
Ruddersdorf, R.8
Mothe, B.R.9
Emerson, C.10
Wilson, N.11
Lifson, J.D.12
Belyakov, I.M.13
Berzofsky, J.A.14
Wang, C.15
Allison, D.B.16
Montefiori, D.C.17
Desrosiers, R.C.18
Wolinsky, S.19
Kunstman, K.J.20
Altman, J.D.21
Sette, A.22
McMichael, A.J.23
Watkins, D.I.24
more..
-
3
-
-
0035164653
-
+ lymphocytes from simian immunodeficiency virus-infected rhesus macaques recognize 14 different epitopes bound by the major histocompatibility complex class I molecule mamu-A*01: Implications for vaccine design and testing
-
+ lymphocytes from simian immunodeficiency virus-infected rhesus macaques recognize 14 different epitopes bound by the major histocompatibility complex class I molecule mamu-A*01: implications for vaccine design and testing. J. Virol. 75:738-749.
-
(2001)
J. Virol.
, vol.75
, pp. 738-749
-
-
Allen, T.M.1
Mothe, B.R.2
Sidney, J.3
Jing, P.4
Dzuris, J.L.5
Liebl, M.E.6
Vogel, T.U.7
O'Connor, D.H.8
Wang, X.9
Wussow, M.C.10
Thomson, J.A.11
Altman, J.D.12
Watkins, D.I.13
Sette, A.14
-
4
-
-
0034699512
-
Tat-specific cytotoxic T lymphocytes select for SIV escape variants during resolution of primary viraemia
-
Allen, T. M., D. H. O'Connor, P. Jing, J. L. Dzuris, B. R. Mothe, T. U. Vogel, E. Dunphy, M. E. Liebl, C. Emerson, N. Wilson, K. J. Kunstman, X. Wang, D. B. Allison, A. L. Hughes, R. C. Desrosiers, J. D. Altman, S. M. Wolinsky, A. Sette, and D. I. Watkins. 2000. Tat-specific cytotoxic T lymphocytes select for SIV escape variants during resolution of primary viraemia. Nature 407:386-390.
-
(2000)
Nature
, vol.407
, pp. 386-390
-
-
Allen, T.M.1
O'Connor, D.H.2
Jing, P.3
Dzuris, J.L.4
Mothe, B.R.5
Vogel, T.U.6
Dunphy, E.7
Liebl, M.E.8
Emerson, C.9
Wilson, N.10
Kunstman, K.J.11
Wang, X.12
Allison, D.B.13
Hughes, A.L.14
Desrosiers, R.C.15
Altman, J.D.16
Wolinsky, S.M.17
Sette, A.18
Watkins, D.I.19
-
5
-
-
0032546828
-
Modest Briton stirs up storm with views on role of CTLs
-
Balter, M. 1998. Modest Briton stirs up storm with views on role of CTLs. Science 280:1860-1861.
-
(1998)
Science
, vol.280
, pp. 1860-1861
-
-
Balter, M.1
-
6
-
-
0037791747
-
Viral escape from dominant simian immunodeficiency virus epitope-specific cytotoxic T lymphocytes in DNA-vaccinated rhesus monkeys
-
Barouch, D. H., J. Kunstman, J. Glowczwskie, K. J. Kunstman, M. A. Egan, F. W. Peyerl, S. Santra, M. J. Kuroda, J. E. Schmitz, K. Beaudry, G. R. Krivulka, M. A. Lifton, D. A. Gorgone, S. M. Wolinsky, and N. L. Lettin. 2003. Viral escape from dominant simian immunodeficiency virus epitope-specific cytotoxic T lymphocytes in DNA-vaccinated rhesus monkeys. J. Virol. 77:7367-7375.
-
(2003)
J. Virol.
, vol.77
, pp. 7367-7375
-
-
Barouch, D.H.1
Kunstman, J.2
Glowczwskie, J.3
Kunstman, K.J.4
Egan, M.A.5
Peyerl, F.W.6
Santra, S.7
Kuroda, M.J.8
Schmitz, J.E.9
Beaudry, K.10
Krivulka, G.R.11
Lifton, M.A.12
Gorgone, D.A.13
Wolinsky, S.M.14
Lettin, N.L.15
-
7
-
-
16944365445
-
Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus
-
Borrow, P., H. Lewicki, X. Wei, M. S. Horwitz, N. Peffer, H. Meyers, J. A. Nelson, J. E. Gairin, B. H. Hahn, M. B. Oldstone, and G. M. Shaw. 1997. Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus. Nat. Med. 3:205-211.
-
(1997)
Nat. Med.
, vol.3
, pp. 205-211
-
-
Borrow, P.1
Lewicki, H.2
Wei, X.3
Horwitz, M.S.4
Peffer, N.5
Meyers, H.6
Nelson, J.A.7
Gairin, J.E.8
Hahn, B.H.9
Oldstone, M.B.10
Shaw, G.M.11
-
8
-
-
0029886599
-
The MHC class I genes of the rhesus monkey. Different evolutionary histories of MHC class I and II genes in primates
-
Boyson, J. E., C. Shufflebotham, L. F. Cadavid, J. A. Urvater, L. A. Knapp, A. L. Hughes, and D. I. Watkins. 1996. The MHC class I genes of the rhesus monkey. Different evolutionary histories of MHC class I and II genes in primates. J. Immunol. 156:4656-4665.
-
(1996)
J. Immunol.
, vol.156
, pp. 4656-4665
-
-
Boyson, J.E.1
Shufflebotham, C.2
Cadavid, L.F.3
Urvater, J.A.4
Knapp, L.A.5
Hughes, A.L.6
Watkins, D.I.7
-
9
-
-
0026088713
-
Selection of genetic variants of simian immunodeficiency, virus in persistently infected rhesus monkeys
-
Burns, D. P., and R. C. Desrosiers. 1991. Selection of genetic variants of simian immunodeficiency, virus in persistently infected rhesus monkeys. J. Virol. 65:1843-1854.
-
(1991)
J. Virol.
, vol.65
, pp. 1843-1854
-
-
Burns, D.P.1
Desrosiers, R.C.2
-
10
-
-
0028102083
-
Effects of natural sequence variation on recognition by monoclonal antibodies neutralize simian immunodeficiency virus infectivity
-
Choi, W. S., C. Collignon, C. Thiriart, D. P. Burns, E. J. Stott, K. A. Kent, and R. C. Desrosiers. 1994. Effects of natural sequence variation on recognition by monoclonal antibodies neutralize simian immunodeficiency virus infectivity. J. Virol. 68:5395-5402.
-
(1994)
J. Virol.
, vol.68
, pp. 5395-5402
-
-
Choi, W.S.1
Collignon, C.2
Thiriart, C.3
Burns, D.P.4
Stott, E.J.5
Kent, K.A.6
Desrosiers, R.C.7
-
11
-
-
0037032880
-
Correlation between breadth of memory HIV-specific cytotoxic T cells, viral load and disease progression in HIV infection
-
Chouquet, C., B. Autran, E. Gomard, J. M. Bouley, V. Calvez, C. Katlama, D. Costagliola, and Y. Riviere. 2002. Correlation between breadth of memory HIV-specific cytotoxic T cells, viral load and disease progression in HIV infection. AIDS 16:2399-2407.
-
(2002)
AIDS
, vol.16
, pp. 2399-2407
-
-
Chouquet, C.1
Autran, B.2
Gomard, E.3
Bouley, J.M.4
Calvez, V.5
Katlama, C.6
Costagliola, D.7
Riviere, Y.8
-
12
-
-
0345742562
-
Removal of N-linked glycosylation sites in the V1 region of simian immunodeficiency virus gp120 results in redirection of B-cell responses to V3
-
Cole, K. S., J. D. Steckbeck, J. L. Rowles, R. C. Desrosiers, and R. C. Montelaro. 2004. Removal of N-linked glycosylation sites in the V1 region of simian immunodeficiency virus gp120 results in redirection of B-cell responses to V3. J. Virol. 78:1525-1539.
-
(2004)
J. Virol.
, vol.78
, pp. 1525-1539
-
-
Cole, K.S.1
Steckbeck, J.D.2
Rowles, J.L.3
Desrosiers, R.C.4
Montelaro, R.C.5
-
13
-
-
11144357869
-
Immune selection for altered antigen processing leads to cytotoxic T lymphocyte escape in chronic HIV-1 infection
-
Draenert, R., S. Le Gall, K. J. Pfafferoll, A. J. Leslie, P. Chetty, C. Brander, E. C. Holmes, S. C. Chang, M. E. Feeney, M. M. Addo, L. Ruiz, D. Ramduth, P. Jeena, M. Altfeld, S. Thomas, Y. Tang, C. L. Verrill, C. Dixon, J. G. Prado, P. Kiepiela, J. Martinez-Picado, B. D. Walker, and P. J. Goulder. 2004. Immune selection for altered antigen processing leads to cytotoxic T lymphocyte escape in chronic HIV-1 infection. J. Exp. Med. 199:905-915.
-
(2004)
J. Exp. Med.
, vol.199
, pp. 905-915
-
-
Draenert, R.1
Le Gall, S.2
Pfafferoll, K.J.3
Leslie, A.J.4
Chetty, P.5
Brander, C.6
Holmes, E.C.7
Chang, S.C.8
Feeney, M.E.9
Addo, M.M.10
Ruiz, L.11
Ramduth, D.12
Jeena, P.13
Altfeld, M.14
Thomas, S.15
Tang, Y.16
Verrill, C.L.17
Dixon, C.18
Prado, J.G.19
Kiepiela, P.20
Martinez-Picado, J.21
Walker, B.D.22
Goulder, P.J.23
more..
-
14
-
-
9144266646
-
Persistent recognition of autologous virus by high-avidity CD8 T cells in chronic, progressive human immunodeficiency virus type 1 infection
-
Draenert, R., C. L. Verrill, Y. Tang, T. M. Allen, A. G. Wurcel, M. Boczanowski, A. Lechner, A. Y. Kim, T. Suscovich, N. V. Brown, M. M. Addo, and B. D. Walker. 2004. Persistent recognition of autologous virus by high-avidity CD8 T cells in chronic, progressive human immunodeficiency virus type 1 infection. J. Virol. 78:630-641.
-
(2004)
J. Virol.
, vol.78
, pp. 630-641
-
-
Draenert, R.1
Verrill, C.L.2
Tang, Y.3
Allen, T.M.4
Wurcel, A.G.5
Boczanowski, M.6
Lechner, A.7
Kim, A.Y.8
Suscovich, T.9
Brown, N.V.10
Addo, M.M.11
Walker, B.D.12
-
15
-
-
0034192255
-
Importance of the CD3 marker for evaluating changes in rhesus macaque CD4/CD8 T-cell ratios
-
Dykhuizen, M., J. Ceman, J. Milchen, M. Zayas, A. MacDougall, J. Helgeland, E. Rakasz, and C. D. Pauza. 2000. Importance of the CD3 marker for evaluating changes in rhesus macaque CD4/CD8 T-cell ratios. Cytometry 40:69-75.
-
(2000)
Cytometry
, vol.40
, pp. 69-75
-
-
Dykhuizen, M.1
Ceman, J.2
Milchen, J.3
Zayas, M.4
MacDougall, A.5
Helgeland, J.6
Rakasz, E.7
Pauza, C.D.8
-
16
-
-
0032697315
-
Virus-specific cytotoxic T-lymphocyte responses select for amino-acid variation in simian immunodeficiency virus Env and Nef
-
Evans, D. T., D. H. O'Connor, P. Jing, J. L. Dzuris, J. Sidney, J. da Silva, T. M. Allen, H. Horton, J. E. Venham, R. A. Rudersdorf, T. Vogel, C. D. Pauza, R. E. Bontrop, R. DeMars, A. Seite, A. L. Hughes, and D. I. Watkins. 1999. Virus-specific cytotoxic T-lymphocyte responses select for amino-acid variation in simian immunodeficiency virus Env and Nef. Nat. Med. 5:1270-1276.
-
(1999)
Nat. Med.
, vol.5
, pp. 1270-1276
-
-
Evans, D.T.1
O'Connor, D.H.2
Jing, P.3
Dzuris, J.L.4
Sidney, J.5
Da Silva, J.6
Allen, T.M.7
Horton, H.8
Venham, J.E.9
Rudersdorf, R.A.10
Vogel, T.11
Pauza, C.D.12
Bontrop, R.E.13
DeMars, R.14
Seite, A.15
Hughes, A.L.16
Watkins, D.I.17
-
17
-
-
0022203256
-
Phylogenies and the comparative method
-
Felsenstein, J. 1985. Phylogenies and the comparative method. Am. Nat. 125:1-15.
-
(1985)
Am. Nat.
, vol.125
, pp. 1-15
-
-
Felsenstein, J.1
-
18
-
-
10744221493
-
Extraepitopic compensatory substitutions partially restore fitness to simian immunodeficiency virus variants that escape from an immunodominant cytotoxic-T-lymphocyte response
-
Friedrich, T. C., C. A. Frye, L. J. Yant, D. H. O'Connor, N. A. Kriewaldt, M. Benson, L. Vojnov, E. J. Dodds, C. Cullen, R. Rudersdorf, A. L. Hughes, N. Wilson, and D. I. Watkins. 2004. Extraepitopic compensatory substitutions partially restore fitness to simian immunodeficiency virus variants that escape from an immunodominant cytotoxic-T-lymphocyte response. J. Virol. 78:2581-2585.
-
(2004)
J. Virol.
, vol.78
, pp. 2581-2585
-
-
Friedrich, T.C.1
Frye, C.A.2
Yant, L.J.3
O'Connor, D.H.4
Kriewaldt, N.A.5
Benson, M.6
Vojnov, L.7
Dodds, E.J.8
Cullen, C.9
Rudersdorf, R.10
Hughes, A.L.11
Wilson, N.12
Watkins, D.I.13
-
19
-
-
0037189323
-
Diversity considerations in HIV-1 vaccine selection
-
Gaschen, B., J. Taylor, K. Yusim, B. Foley, F. Gao, D. Lang, V. Novitsky, B. Haynes, B. H. Hahn, T. Bhattacharya, and B. Korber. 2002. Diversity considerations in HIV-1 vaccine selection. Science 296:2354-2360.
-
(2002)
Science
, vol.296
, pp. 2354-2360
-
-
Gaschen, B.1
Taylor, J.2
Yusim, K.3
Foley, B.4
Gao, F.5
Lang, D.6
Novitsky, V.7
Haynes, B.8
Hahn, B.H.9
Bhattacharya, T.10
Korber, B.11
-
20
-
-
16944366524
-
Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS
-
Goulder, P. J., R. E. Phillips, R. A. Colbert, S. McAdam, G. Ogg, M. A. Nowak, P. Giangrande, G. Luzzi, B. Morgan, A. Edwards, A. J. McMichael, and S. Rowland-Jones. 1997. Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS. Nat. Med. 3:212-217.
-
(1997)
Nat. Med.
, vol.3
, pp. 212-217
-
-
Goulder, P.J.1
Phillips, R.E.2
Colbert, R.A.3
McAdam, S.4
Ogg, G.5
Nowak, M.A.6
Giangrande, P.7
Luzzi, G.8
Morgan, B.9
Edwards, A.10
McMichael, A.J.11
Rowland-Jones, S.12
-
21
-
-
17144465337
-
Immunization of rhesus macaques with a DNA prime/modified vaccinia virus Ankara boost regimen induces broad simian immunodeficiency virus (SIV)-specific T-cell responses and reduces initial viral replication but does not prevent disease progression following challenge with pathogenic SIVmac239
-
Horton, H., T. U. Vogel, D. K. Carter, K. Vielhuber, D. H. Fuller, T. Shipley, J. T. Fuller, K. J. Kunstman, G. Sutler, D. C. Montefiori, V. Erfle, R. C. Desrosiers, N. Wilson, L. J. Picker, S. M. Wolinsky, C. Wang, D. B. Allison, and D. I. Watkins. 2002. Immunization of rhesus macaques with a DNA prime/modified vaccinia virus Ankara boost regimen induces broad simian immunodeficiency virus (SIV)-specific T-cell responses and reduces initial viral replication but does not prevent disease progression following challenge with pathogenic SIVmac239. J. Virol. 76:7187-7202.
-
(2002)
J. Virol.
, vol.76
, pp. 7187-7202
-
-
Horton, H.1
Vogel, T.U.2
Carter, D.K.3
Vielhuber, K.4
Fuller, D.H.5
Shipley, T.6
Fuller, J.T.7
Kunstman, K.J.8
Sutler, G.9
Montefiori, D.C.10
Erfle, V.11
Desrosiers, R.C.12
Wilson, N.13
Picker, L.J.14
Wolinsky, S.M.15
Wang, C.16
Allison, D.B.17
Watkins, D.I.18
-
22
-
-
0035808775
-
Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses
-
Kelleher, A. D., C. Long, E. C. Holmes, R. L. Allen, J. Wilson, C. Conlon, C. Workman, S. Shaunak, K. Olson, P. Goulder, C. Brander, G. Ogg, J. S. Sullivan, W. Dyer, I. Jones, A. J. McMichael, S. Rowland-Jones, and R. E. Phillips. 2001. Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses. J. Exp. Med. 193:375-386.
-
(2001)
J. Exp. Med.
, vol.193
, pp. 375-386
-
-
Kelleher, A.D.1
Long, C.2
Holmes, E.C.3
Allen, R.L.4
Wilson, J.5
Conlon, C.6
Workman, C.7
Shaunak, S.8
Olson, K.9
Goulder, P.10
Brander, C.11
Ogg, G.12
Sullivan, J.S.13
Dyer, W.14
Jones, I.15
McMichael, A.J.16
Rowland-Jones, S.17
Phillips, R.E.18
-
23
-
-
0031777959
-
Role of the SH3-ligand domain of simian immunodeficiency virus Nef in interaction with Nef-associated kinase and simian AIDS in rhesus macaques
-
Khan, I. H., E. T. Sawai, E. Antonio, C. J. Weber, C. P. Mandell, P. Montbriand, and P. A. Luciw. 1998. Role of the SH3-ligand domain of simian immunodeficiency virus Nef in interaction with Nef-associated kinase and simian AIDS in rhesus macaques. J. Virol. 72:5820-5830.
-
(1998)
J. Virol.
, vol.72
, pp. 5820-5830
-
-
Khan, I.H.1
Sawai, E.T.2
Antonio, E.3
Weber, C.J.4
Mandell, C.P.5
Montbriand, P.6
Luciw, P.A.7
-
24
-
-
0029006397
-
The effects of natural altered peptide ligands on the whole blood cytotoxic T lymphocyte response to human immunodeficiency virus
-
Klenerman, P., U. C. Meier, R. E. Phillips, and A. J. McMichael. 1995. The effects of natural altered peptide ligands on the whole blood cytotoxic T lymphocyte response to human immunodeficiency virus. Eur. J. Immunol. 25:1927-1931.
-
(1995)
Eur. J. Immunol.
, vol.25
, pp. 1927-1931
-
-
Klenerman, P.1
Meier, U.C.2
Phillips, R.E.3
McMichael, A.J.4
-
25
-
-
0031452947
-
A high frequency of Mamu-A*01 in the rhesus macaque detected by polymerase chain reaction with sequence-specific primers and direct sequencing
-
Knapp, L. A., E. Lehmann, M. S. Piekarczyk, J. A. Urvater, and D. I. Watkins. 1997. A high frequency of Mamu-A*01 in the rhesus macaque detected by polymerase chain reaction with sequence-specific primers and direct sequencing. Tissue Antigens 50:657-661.
-
(1997)
Tissue Antigens
, vol.50
, pp. 657-661
-
-
Knapp, L.A.1
Lehmann, E.2
Piekarczyk, M.S.3
Urvater, J.A.4
Watkins, D.I.5
-
26
-
-
0004040195
-
-
Los Alamos National Laboratory, Los Alamos, N.Mex.
-
Korber, B., C. Brander, B. Haynes, R. Koup, C. Kuiken, J. Moore, B. D. Walker, and D. I. Watkins. 2002. In HIV molecular immunology compendium. Los Alamos National Laboratory, Los Alamos, N.Mex.
-
(2002)
HIV Molecular Immunology Compendium
-
-
Korber, B.1
Brander, C.2
Haynes, B.3
Koup, R.4
Kuiken, C.5
Moore, J.6
Walker, B.D.7
Watkins, D.I.8
-
27
-
-
0029023743
-
Contribution of hypervariable domains to the conformation of a broadly neutralizing glycoprotein 120 epitope
-
Lee, C. N., J. Robinson, G. Mazzara, Y. L. Cheng, M. Essex, and T. H. Lee. 1995. Contribution of hypervariable domains to the conformation of a broadly neutralizing glycoprotein 120 epitope. AIDS Res. Hum. Retrovir. 11:777-781.
-
(1995)
AIDS Res. Hum. Retrovir.
, vol.11
, pp. 777-781
-
-
Lee, C.N.1
Robinson, J.2
Mazzara, G.3
Cheng, Y.L.4
Essex, M.5
Lee, T.H.6
-
28
-
-
0027403961
-
Unbiased estimation of the rates of synonymous and non-synonymous substitution
-
Li, W. H. 1993. Unbiased estimation of the rates of synonymous and non-synonymous substitution. J. Mol. Evol. 36:96-99.
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 96-99
-
-
Li, W.H.1
-
29
-
-
6344234923
-
+ T cell epitopes restricted by the high frequency molecule, Mamu-A*02, and potential escape from CTL recognition
-
+ T cell epitopes restricted by the high frequency molecule, Mamu-A*02, and potential escape from CTL recognition. J. Immunol. 173:5064-5076.
-
(2004)
J. Immunol.
, vol.173
, pp. 5064-5076
-
-
Loffredo, J.T.1
Sidney, J.2
Wojewoda, C.3
Dodds, E.4
Reynolds, M.R.5
Napoe, G.6
Mothe, B.R.7
O'Connor, D.H.8
Wilson, N.A.9
Watkins, D.I.10
Sette, A.11
-
30
-
-
1542287436
-
Repeated low-dose mucosal simian immunodeficiency virus SIVmac239 challenge results in the same viral and immunological kinetics as high-dose challenge: A model for the evaluation of vaccine efficacy in nonhuman primates
-
McDermott, A. B., J. Mitchen, S. Piaskowski, I. De Souza, L. J. Yant, J. Stephany, J. Furlott, and D. I. Watkins. 2004. Repeated low-dose mucosal simian immunodeficiency virus SIVmac239 challenge results in the same viral and immunological kinetics as high-dose challenge: a model for the evaluation of vaccine efficacy in nonhuman primates. J. Virol. 78:3140-3144.
-
(2004)
J. Virol.
, vol.78
, pp. 3140-3144
-
-
McDermott, A.B.1
Mitchen, J.2
Piaskowski, S.3
De Souza, I.4
Yant, L.J.5
Stephany, J.6
Furlott, J.7
Watkins, D.I.8
-
31
-
-
0030070991
-
Prognosis in HIV-1 infection predicted by the quantity of virus in plasma
-
Mellors, J. W., C. R. Rinaldo, Jr., P. Gupta, R. M. White, J. A. Todd, and L. A. Kingsley. 1996. Prognosis in HIV-1 infection predicted by the quantity of virus in plasma. Science 272:1167-1170.
-
(1996)
Science
, vol.272
, pp. 1167-1170
-
-
Mellors, J.W.1
Rinaldo Jr., C.R.2
Gupta, P.3
White, R.M.4
Todd, J.A.5
Kingsley, L.A.6
-
32
-
-
0037942658
-
+ long-term nonprogressors and progressors to restrict human immunodeficiency virus replication is not caused by loss of recognition of autologous viral gag sequences
-
+ long-term nonprogressors and progressors to restrict human immunodeficiency virus replication is not caused by loss of recognition of autologous viral gag sequences. J. Virol. 77:6889-6898.
-
(2003)
J. Virol.
, vol.77
, pp. 6889-6898
-
-
Migueles, S.A.1
Laborico, A.C.2
Imamichi, H.3
Shupert, W.L.4
Royce, C.5
McLaughlin, M.6
Ehler, L.7
Metcalf, J.8
Liu, S.9
Hallahan, C.W.10
Connors, M.11
-
33
-
-
0037165969
-
Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level
-
Moore, C. B., M. John, I. R. James, F. T. Christiansen, C. S. Witt, and S. A. Mallal. 2002. Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level. Science 296:1439-1443.
-
(2002)
Science
, vol.296
, pp. 1439-1443
-
-
Moore, C.B.1
John, M.2
James, I.R.3
Christiansen, F.T.4
Witt, C.S.5
Mallal, S.A.6
-
34
-
-
0036138042
-
Dominance of CD8 responses specific for epitopes bound by a single major histocompatibility complex class I molecule during the acute phase of viral infection
-
Mothe, B. R., H. Horton, D. K. Carter, T. M. Allen, M. E. Liebl, P. Skinner, T. U. Vogel, S. Fuenger, K. Vielhuber, W. Rehrauer, N. Wilson, G. Franchini, J. D. Altman, A. Haase, L. J. Picker, D. B. Allison, and D. I. Watkins. 2002. Dominance of CD8 responses specific for epitopes bound by a single major histocompatibility complex class I molecule during the acute phase of viral infection. J. Virol. 76:875-884.
-
(2002)
J. Virol.
, vol.76
, pp. 875-884
-
-
Mothe, B.R.1
Horton, H.2
Carter, D.K.3
Allen, T.M.4
Liebl, M.E.5
Skinner, P.6
Vogel, T.U.7
Fuenger, S.8
Vielhuber, K.9
Rehrauer, W.10
Wilson, N.11
Franchini, G.12
Altman, J.D.13
Haase, A.14
Picker, L.J.15
Allison, D.B.16
Watkins, D.I.17
-
35
-
-
0036644216
-
Characterization of the peptide-binding specificity of Mamu-B*17 and identification of Mamu-B*17-restricted epitopes derived from simian immunodeficiency virus proteins
-
Mothe, B. R., J. Sidney, J. L. Dzuris, M. E. Liebl, S. Fuenger, D. I. Watkins, and A. Sette. 2002. Characterization of the peptide-binding specificity of Mamu-B*17 and identification of Mamu-B*17-restricted epitopes derived from simian immunodeficiency virus proteins. J. Immunol. 169:210-219.
-
(2002)
J. Immunol.
, vol.169
, pp. 210-219
-
-
Mothe, B.R.1
Sidney, J.2
Dzuris, J.L.3
Liebl, M.E.4
Fuenger, S.5
Watkins, D.I.6
Sette, A.7
-
36
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M., and T. Gojobori. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
38
-
-
0028911399
-
Sequence constraints and recognition by CTL of an HLA-B27-restricted HIV-1 gag epitope
-
Nietfield, W., M. Bauer, M. Fevrier, R. Maier, B. Holzwarth, R. Frank, B. Maier, Y. Riviere, and A. Meyerhans. 1995. Sequence constraints and recognition by CTL of an HLA-B27-restricted HIV-1 gag epitope. J. Immunol. 154:2189-2197.
-
(1995)
J. Immunol.
, vol.154
, pp. 2189-2197
-
-
Nietfield, W.1
Bauer, M.2
Fevrier, M.3
Maier, R.4
Holzwarth, B.5
Frank, R.6
Maier, B.7
Riviere, Y.8
Meyerhans, A.9
-
39
-
-
0036113306
-
Acute phase cytotoxic T lymphocyte escape is a hallmark of simian immunodeficiency virus infection
-
O'Connor, D. H., T. M. Allen, T. U. Vogel, P. Jing, I. P. DeSouza, E. Dodds, E. J. Dunphy, C. Melsaether, B. Mothe, H. Yamamoto, H. Horton, N. Wilson, A. L. Hughes, and D. I. Watkins. 2002. Acute phase cytotoxic T lymphocyte escape is a hallmark of simian immunodeficiency virus infection. Nat. Med. 8:493-499.
-
(2002)
Nat. Med.
, vol.8
, pp. 493-499
-
-
O'Connor, D.H.1
Allen, T.M.2
Vogel, T.U.3
Jing, P.4
DeSouza, I.P.5
Dodds, E.6
Dunphy, E.J.7
Melsaether, C.8
Mothe, B.9
Yamamoto, H.10
Horton, H.11
Wilson, N.12
Hughes, A.L.13
Watkins, D.I.14
-
40
-
-
0041707676
-
Major histocompatibility complex class I alleles associated with slow simian immunodeficiency virus disease progression bind epitopes recognized by dominant acute-phase cytotoxic-T-lymphocyte responses
-
O'Connor, D. H., B. R. Mothe, J. T. Weinfurter, S. Fuenger, W. M. Rehrauer, P. Jing, R. R. Rudersdorf, M. E. Liebl, K. Krebs, J. Vasquez, E. Dodds, J. Loffredo, S. Martin, A. B. McDermott, T. M. Allen, C. Wang, G. G. Doxiadis, D. C. Montefiori, A. Hughes, D. R. Burton, D. B. Allison, S. M. Wolinsky, R. Bontrop, L. J. Picker, and D. I. Watkins. 2003. Major histocompatibility complex class I alleles associated with slow simian immunodeficiency virus disease progression bind epitopes recognized by dominant acute-phase cytotoxic-T-lymphocyte responses. J. Virol. 77:9029-9040.
-
(2003)
J. Virol.
, vol.77
, pp. 9029-9040
-
-
O'Connor, D.H.1
Mothe, B.R.2
Weinfurter, J.T.3
Fuenger, S.4
Rehrauer, W.M.5
Jing, P.6
Rudersdorf, R.R.7
Liebl, M.E.8
Krebs, K.9
Vasquez, J.10
Dodds, E.11
Loffredo, J.12
Martin, S.13
McDermott, A.B.14
Allen, T.M.15
Wang, C.16
Doxiadis, G.G.17
Montefiori, D.C.18
Hughes, A.19
Burton, D.R.20
Allison, D.B.21
Wolinsky, S.M.22
Bontrop, R.23
Picker, L.J.24
Watkins, D.I.25
more..
-
41
-
-
0035844057
-
Selection forces and constraints on retroviral sequence variation
-
Overbaugh, J., and C. R. Bangham. 2001. Selection forces and constraints on retroviral sequence variation. Science 292:1106-1109.
-
(2001)
Science
, vol.292
, pp. 1106-1109
-
-
Overbaugh, J.1
Bangham, C.R.2
-
42
-
-
0034468260
-
Naturally occurring V1-Env region variants mediate simian immunodeficiency virus SIVmac escape from high-liter neutralizing antibodies induced by a protective subunit vaccine
-
Petry, H., K. Pekrun, G. Hunsmann, E. Jurkiewicz, and W. Luke. 2000. Naturally occurring V1-Env region variants mediate simian immunodeficiency virus SIVmac escape from high-liter neutralizing antibodies induced by a protective subunit vaccine. J. Virol. 74:11145-11152.
-
(2000)
J. Virol.
, vol.74
, pp. 11145-11152
-
-
Petry, H.1
Pekrun, K.2
Hunsmann, G.3
Jurkiewicz, E.4
Luke, W.5
-
43
-
-
0242409395
-
Simian-human immunodeficiency virus escape from cytotoxic T-lymphocyte recognition at a structurally constrained epitope
-
Peyerl, F. W., D. H. Barouch, W. W. Yeh, H. S. Bazick, J. Kunstman, K. J. Kunstman, S. M. Wolinsky, and N. L. Letvin. 2003. Simian-human immunodeficiency virus escape from cytotoxic T-lymphocyte recognition at a structurally constrained epitope. J. Virol. 77:12572-12578.
-
(2003)
J. Virol.
, vol.77
, pp. 12572-12578
-
-
Peyerl, F.W.1
Barouch, D.H.2
Yeh, W.W.3
Bazick, H.S.4
Kunstman, J.5
Kunstman, K.J.6
Wolinsky, S.M.7
Letvin, N.L.8
-
44
-
-
0025827529
-
Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition
-
Phillips, R. E., S. Rowland-Jones, D. F. Nixon, F. M. Gotch, J. P. Edwards, A. O. Ogunlesi, J. G. Elvin, J. A. Rothbard, C. R. Bangham, C. R. Rizza, et al. 1991. Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition. Nature 354:453-459.
-
(1991)
Nature
, vol.354
, pp. 453-459
-
-
Phillips, R.E.1
Rowland-Jones, S.2
Nixon, D.F.3
Gotch, F.M.4
Edwards, J.P.5
Ogunlesi, A.O.6
Elvin, J.G.7
Rothbard, J.A.8
Bangham, C.R.9
Rizza, C.R.10
-
45
-
-
0031048597
-
Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection
-
Price, D. A., P. J. Goulder, P. Klenerman, A. K. Sewell, P. J. Easterbrook, M. Troop, C. R. Bangham, and R. E. Phillips. 1997. Positive selection of HIV-1 cytotoxic T lymphocyte escape variants during primary infection. Proc. Natl. Acad. Sci. USA 94:1890-1895.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1890-1895
-
-
Price, D.A.1
Goulder, P.J.2
Klenerman, P.3
Sewell, A.K.4
Easterbrook, P.J.5
Troop, M.6
Bangham, C.R.7
Phillips, R.E.8
-
46
-
-
0036229473
-
Role of N-linked glycans in a human immunodeficiency virus envelope glycoprotein: Effects on protein function and the neutralizing antibody response
-
Quinones-Kochs, M. I., L. Buonocore, and J. K. Rose. 2002. Role of N-linked glycans in a human immunodeficiency virus envelope glycoprotein: effects on protein function and the neutralizing antibody response. J. Virol. 76:4199-4211.
-
(2002)
J. Virol.
, vol.76
, pp. 4199-4211
-
-
Quinones-Kochs, M.I.1
Buonocore, L.2
Rose, J.K.3
-
47
-
-
0028061862
-
A region of the third variable loop of HIV-1 gp120 is recognized by HLA-B7-restricted CTLs from two acute seroconversion patients
-
Safrit, J. T., A. Y. Lee, C. A. Andrews, and R. A. Koup. 1994. A region of the third variable loop of HIV-1 gp120 is recognized by HLA-B7-restricted CTLs from two acute seroconversion patients. J. Immunol. 153:3822-3830.
-
(1994)
J. Immunol.
, vol.153
, pp. 3822-3830
-
-
Safrit, J.T.1
Lee, A.Y.2
Andrews, C.A.3
Koup, R.A.4
-
48
-
-
0036828184
-
Escape in one of two cytotoxic T-lymphocyte epitopes bound by a high-frequency major histocompatibility complex class I molecule, Mamu-A*02: A paradigm for virus evolution and persistence?
-
Vogel, T. U., T. C. Friedrich, D. H. O'Connor, W. Rehrauer, E. J. Dodds, H. Hickman, W. Hildebrand, J. Sidney, A. Sette, A. Hughes, H. Horton, K. Vielhuber, R. Rudersdorf, I. P. De Souza, M. R. Reynolds, T. M. Allen, N. Wilson, and D. I. Watkins. 2002. Escape in one of two cytotoxic T-lymphocyte epitopes bound by a high-frequency major histocompatibility complex class I molecule, Mamu-A*02: a paradigm for virus evolution and persistence? J. Virol. 76:11623-11636.
-
(2002)
J. Virol.
, vol.76
, pp. 11623-11636
-
-
Vogel, T.U.1
Friedrich, T.C.2
O'Connor, D.H.3
Rehrauer, W.4
Dodds, E.J.5
Hickman, H.6
Hildebrand, W.7
Sidney, J.8
Sette, A.9
Hughes, A.10
Horton, H.11
Vielhuber, K.12
Rudersdorf, R.13
De Souza, I.P.14
Reynolds, M.R.15
Allen, T.M.16
Wilson, N.17
Watkins, D.I.18
-
49
-
-
0037456827
-
Antibody neutralization and escape by HIV-1
-
Wei, X., J. M. Decker, S. Wang, H. Hui, J. C. Kappes, X. Wu, J. F. Salazar-Gonzalez, M. G. Salazar, J. M. Kilby, M. S. Saag, N. L. Komarova, M. A. Nowak, B. H. Hahn, P. D. Kwong, and G. M. Shaw. 2003. Antibody neutralization and escape by HIV-1. Nature 422:307-312.
-
(2003)
Nature
, vol.422
, pp. 307-312
-
-
Wei, X.1
Decker, J.M.2
Wang, S.3
Hui, H.4
Kappes, J.C.5
Wu, X.6
Salazar-Gonzalez, J.F.7
Salazar, M.G.8
Kilby, J.M.9
Saag, M.S.10
Komarova, N.L.11
Nowak, M.A.12
Hahn, B.H.13
Kwong, P.D.14
Shaw, G.M.15
-
50
-
-
0032543555
-
The antigenic structure of the HIV gp120 envelope glycoprotein
-
Wyatt, R., P. D. Kwong, E. Desjardins, R. W. Sweet, J. Robinson, W. A. Hendrickson, and J. G. Sodroski. 1998. The antigenic structure of the HIV gp120 envelope glycoprotein. Nature 393:705-711.
-
(1998)
Nature
, vol.393
, pp. 705-711
-
-
Wyatt, R.1
Kwong, P.D.2
Desjardins, E.3
Sweet, R.W.4
Robinson, J.5
Hendrickson, W.A.6
Sodroski, J.G.7
-
51
-
-
0033979433
-
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
-
Yang, Z., and R. Nielsen. 2000. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Mol. Biol. Evol. 17:32-43.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 32-43
-
-
Yang, Z.1
Nielsen, R.2
-
52
-
-
9144259999
-
Impaired processing and presentation of cytotoxic-T-lymphocyte (CTL) epitopes are major escape mechanisms from CTL immune pressure in human immunodeficiency virus type 1 infection
-
Yokomaku, Y., H. Miura, H. Tomiyama, A. Kawana-Tachikawa, M. Takiguchi, A. Kojima, Y. Nagai, A. Iwamoto, Z. Matsuda, and K. Ariyoshi. 2004. Impaired processing and presentation of cytotoxic-T-lymphocyte (CTL) epitopes are major escape mechanisms from CTL immune pressure in human immunodeficiency virus type 1 infection. J. Virol. 78:1324-1332.
-
(2004)
J. Virol.
, vol.78
, pp. 1324-1332
-
-
Yokomaku, Y.1
Miura, H.2
Tomiyama, H.3
Kawana-Tachikawa, A.4
Takiguchi, M.5
Kojima, A.6
Nagai, Y.7
Iwamoto, A.8
Matsuda, Z.9
Ariyoshi, K.10
-
53
-
-
0036340475
-
Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation
-
Yusim, K., C. Kesmir, B. Gaschen, M. M. Addo, M. Altfeld, S. Brunak, A. Chigaev, V. Detours, and B. T. Korber. 2002. Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation. J. Virol. 76:8757-8768.
-
(2002)
J. Virol.
, vol.76
, pp. 8757-8768
-
-
Yusim, K.1
Kesmir, C.2
Gaschen, B.3
Addo, M.M.4
Altfeld, M.5
Brunak, S.6
Chigaev, A.7
Detours, V.8
Korber, B.T.9
-
54
-
-
0038618737
-
A novel human antibody against human immunodeficiency virus type 1 gp120 is V1, V2, and V3 loop dependent and helps delimit the epitope of the broadly neutralizing antibody immunoglobulin G1 b12
-
Zwick, M. B., R. Kelleher, R. Jensen, A. F. Labrijn, M. Wang, G. V. Quinnan, Jr., P. W. Parren, and D. R. Burton. 2003. A novel human antibody against human immunodeficiency virus type 1 gp120 is V1, V2, and V3 loop dependent and helps delimit the epitope of the broadly neutralizing antibody immunoglobulin G1 b12. J. Virol. 77:6965-6978.
-
(2003)
J. Virol.
, vol.77
, pp. 6965-6978
-
-
Zwick, M.B.1
Kelleher, R.2
Jensen, R.3
Labrijn, A.F.4
Wang, M.5
Quinnan Jr., G.V.6
Parren, P.W.7
Burton, D.R.8
|