Protein folding as a diffusional process

Biochemistry

Volumn 38, Issue 42, 1999, Pages 13773-13779

  Jacob, Maik ^a   Schmid, Franz X ^a  

^a UNIVERSITY OF BAYREUTH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; DIFFUSION; KINETIC THEORY; MOLECULAR DYNAMICS; SOLVENTS; VISCOSITY;

KRAMERS RATE THEORY; PROTEIN FOLDING; TRANSITION STATE THEORY;

PROTEINS;

PROTEIN; SOLVENT;

DIFFUSION; FRICTION; KINETICS; MODEL; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; REACTION ANALYSIS; REVIEW; THEORY; VISCOSITY;

DIFFUSION; KINETICS; MODELS, CHEMICAL; PROTEIN FOLDING; PROTEINS; THERMODYNAMICS; VISCOSITY;

EID: 0345583701     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991503o     Document Type: Review

References (61)

1. Pohl, F. M. (1976) FEBS Lett. 65, 293-296.
2. Levinthal, C. J. (1968) J. Chim. Phys. 65, 44-45.
3. Ikai, A., and Tanford, C. (1973) J. Mol. Biol. 73, 145-163.
4. Ikai, A., Fish, W. W., and Tanford, C. (1973) J. Mol. Biol. 73, 165-184.
5. Tanford, C., Aune, K. C., and Ikai, A. (1973) J. Mol. Biol. 73, 185-197.
6. Tsong, T.-Y., Baldwin, R. L., and Elson, E. L. (1972) Proc. Natl. Acad. Sci. U.S.A. 69, 1809-1812.
7. Garel, J. R., and Baldwin, R. L. (1973) Proc. Natl. Acad. Sci. U.S.A. 70, 3347-3351.
8. Brandts, J. F., Halvorson, H. R., and Brennan, M. (1975) Biochemistry 14, 4953-4963.
9. Nall, B. T., Garel, J.-R., and Baldwin, R. L. (1978) J. Mol. Biol. 118, 317-330.
10. Ridge, J. A., Baldwin, R. L., and Labhardt, A. M. (1981) Biochemistry 20, 1622-1630.
11. Cook, K. H., Schmid, F. X., and Baldwin, R. L. (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 6157-6161.
12. Schmid, F. X., and Blaschek, H. (1981) Eur. J. Biochem. 114, 111-117.
13. Roder, H., Elöve, G. A., and Englander, S. W. (1988) Nature 335, 700-704.
14. Udgaonkar, J. B., and Baldwin, R. L. (1988) Nature 335, 694-699.
15. Balbach, J., Steegborn, C., Schindler, T., and Schmid, F. X. (1999) J. Mol. Biol. 285, 829-842.
16. Roder, H., and Colon, W. (1997) Curr. Opin. Struct. Biol. 7, 15-28.
17. Jackson, S. E., and Fersht, A. R. (1991) Biochemistry 30, 10428-10435.
18. Schindler, T., Herrler, M., Marahiel, M. A., and Schmid, F. X. (1995) Nat. Struct. Biol. 2, 663-673.
19. Kragelund, B. B., Robinson, C. V., Knudsen, J., Dobson, C. M., and Poulsen, F. M. (1995) Biochemistry 34, 7217-7224.
20. Huang, G. S., and Oas, T. G. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 6878-6882.
21. Waldburger, C. D., Jonsson, T., and Sauer, R. T. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 2629-2634.
22. Viguera, A. R., and Serrano, L. (1997) Nat. Struct. Biol. 4, 939-946.
23. Plaxco, K. W., and Baker, D. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 13591-13596.
24. Grantcharova, V. P., Riddle, D. S., Santiago, J. V., and Baker, D. (1998) Nat. Struct. Biol. 5, 714-720.
25. Fersht, A. R. (1995) Curr. Opin. Struct. Biol. 5, 79-84.
26. Kramers, H. A. (1940) Physica 7, 284-304.
27. Hynes, J. T. (1985) Annu. Rev. Phys. Chem. 36, 573-597.
28. Frauenfelder, H., and Wolynes, P. G. (1985) Science 229, 337-345.
29. Gavish, B. (1986) in The fluctuating enzyme (Welch, G. R., Ed.) pp 263-339, Wiley-Interscience, New York.
30. Gutfreund, H. (1995) Kinetics for the life sciences, Cambridge University Press, Cambridge, U.K.
31. Landauer, R., and Swanson, J. A. (1961) Phys. Rev. 121, 1668-1674.
32. Karplus, M., and Weaver, D. L. (1979) Biopolymers 18, 1421-1437.
33. Gavish, B., and Werber, M. M. (1979) Biochemistry 18, 1269-1275.
34. Ansari, A., Jones, C. M., Henry, E. R., Hofrichter, J., and Eaton, W. A. (1992) Science 256, 1796-1798.
35. Beece, D., Eisenstein, L., Frauenfelder, H., Good, D., Marden, M. C., Reinisch, L., Reynolds, A. H., Sorensen, L. B., and Yue, K. T. (1980) Biochemistry 19, 5147-5157.
36. Kleinert, T., Doster, W., Leyser, H., Petry, W., Schwarz, V., and Settles, M. (1998) Biochemistry 37, 717-733.
37. Teschner, W., Rudolph, R., and Garel, J.-R. (1987) Biochemistry 26, 2791-2796.
38. Vaucheret, H., Signon, L., Lebras, G., and Garel, J.-R. (1987) Biochemistry 26, 2785-2790.
39. Chrunyk, B. A., and Matthews, C. R. (1990) Biochemistry 29, 2149-2154.
40. Tsong, T. Y., and Baldwin, R. L. (1978) Bioploymers 17, 1669-1678.
41. Garel, J.-R. (1992) in Protein Folding (Creighton, T. E., Ed.) pp 405-454, Freeman, New York.
42. Haas, E., Katchalski-Katzir, E., and Steinberg, I. Z. (1978) Biopolymers 17, 11-31.
43. Goldberg, J. M., and Baldwin, R. L. (1998) Biochemistry 37, 2556-2563.
44. Goldberg, J. M., and Baldwin, R. L. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 2019-2024.
45. Jacob, M., Schindler, T., Balbach, J., and Schmid, F. X. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 5622-5627.
46. Timasheff, S. N. (1993) Annu. Rev. Biophys. Biomol. Struct. 22, 67-97.
47. Jacob, M., Geeves, M., Holtermann, G., and Schmid, F. X. (1999) Nat. Struct. Biol. (in press).
48. Bhattacharyya, R. P., and Sosnick, T. R. (1999) Biochemistry 38, 2601-2609.
49. Ladurner, A. G., and Fersht, A. R. (1999) Nat. Struct. Biol. 6, 28-31.
50. Gekko, K. (1982) J. Biochem. (Tokyo) 91, 1197-1204.
51. Jacob, M., Holtermann, G., Perl, D., Reinstein, J., Schindler, T., Geeves, M. A., and Schmid, F. X. (1999) Biochemistry 38, 2882-2891.
52. Kawahara, K., and Tanford, C. (1966) J. Biol. Chem. 241, 3228-3232.
53. Schindler, T., and Schmid, F. X. (1996) Biochemistry 35, 16833-16842.
54. Perl, D., Welker, C., Schindler, T., Schröder, K., Marahiel, M. A., Jaenicke, R., and Schmid, F. X. (1998) Nat. Struct. Biol. 5, 229-235.
55. Onuchic, J. N., Socci, N. D., Luthey-Schulten, Z., and Wolynes, P. G. (1996) Folding Des. 1, 441-450.
56. Alm, E., and Baker, D. (1999) Curr. Opin. Struct. Biol. 9, 189-196.
57. Bashford, D., Cohen, F. E., Karplus, M., Kuntz, I. D., and Weaver, D. L. (1988) Proteins: Struct., Funct., Genet. 4, 211-227.
58. Pappu, R. V., and Weaver, D. L. (1998) Protein Sci. 7, 480-490.
59. Burton, R. E., Myers, J. K., and Oas, T. G. (1998) Biochemistry 37, 5337-5343.
60. Socci, N. D., Onuchic, J. N., and Wolynes, P. G. (1996) J. Chem. Phys. 104, 5860-5868.
61. Klimov, D. K., and Thirumalai, D. (1997) Phys. Rev. Lett. 79, 317-320.