Genetic interactions in yeast between Ypt GTPases and Arf guanine nucleotide exchangers

Genetics

Volumn 152, Issue 4, 1999, Pages 1543-1556

  Jones, Sara ^a   Jedd, Gregory ^a,d   Kahn, Richard A ^b   Franzusoff, Alex ^c   Bartolini, Francesca ^a   Segev, Nava ^a  

^a UNIVERSITY OF CHICAGO   (United States)

^b EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF COLORADO   (United States)

^d ROCKEFELLER UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BREFELDIN A; GUANINE NUCLEOTIDE EXCHANGE FACTOR; GUANOSINE DIPHOSPHATE; GUANOSINE TRIPHOSPHATASE; GUANOSINE TRIPHOSPHATE;

ARTICLE; CONTROLLED STUDY; GENE REPRESSION; MEMBRANE VESICLE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN SECRETION; PROTEIN TRANSPORT; SEQUENCE HOMOLOGY; YEAST;

ADP-RIBOSYLATION FACTORS; AMINO ACID SEQUENCE; FUNGAL PROTEINS; GTP PHOSPHOHYDROLASES; GTP-BINDING PROTEINS; GUANINE NUCLEOTIDE EXCHANGE FACTORS; MACROMOLECULAR SUBSTANCES; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; RAB GTP-BINDING PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0345151822     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (64)

1. ACHSTETTER, T., A. FRANZUSOFF, C. FIELD and R. SCHEKMAN, 1988 SEC7 encodes an unusual, high molecular weight protein required for membrane traffic from the yeast Golgi apparatus. J. Biol. Chem. 263: 11711-11717.
2. BACON, R. A., A. SALMINEN, H. RUOHOLA, P. NOVICK and S. FERRONOVICK, 1989 The GTP-binding protein Ypt1 is required for transport in vitro: the Golgi apparatus is defective in ypt1 mutants. J. Cell Biol. 109: 1015-1022.
3. BAKER, D., L. WUESTEHUBE, R. SCHEKMAN, D. BOTSTEIN and N. SEGEV, 1990 GTP-binding Ypt1 protein and Ca2+ function independently in a cell-free transport reaction. Proc. Natl. Acad. Sci. USA 87: 355-359.
4. BETZ, S. F., A. SCHNUCHEL, H. WANG, E. T. OLEJNICZAK, R. P. MEADOWS et al., 1998 Solution structure of the cytohesin (B2-1) Sec7 domain and its interaction with the GTPase ADP ribosylation factor 1. Proc. Natl. Acad. Sci. USA 95: 7909-7914.
5. BOMAN, A. L., T. C. TAYLOR, P. MELANCON and K. L. WILSON, 1992 A role for ADP-ribosylation factor in nuclear vesicle dynamics. Nature 358: 512-514.
6. CARLSON, M., and D. BOTSTEIN, 1982 Two differentially regulated mRNAs with different 5′ ends encode secreted and intracellular forms of yeast invertase. Cell 28: 145-154.
7. CAUMONT, A. S., M. C. GALAS, N. VITALE, D. AUNIS and M. F. BADER, 1998 Regulated exocytosis in chromaffin cells. Translocation of ARF6 stimulates a plasma membrane-associated phospholipase D. J. Biol. Chem. 273: 1373-1379.
8. CHANT, J., and L. STOWERS, 1995 GTPase cascades choreographing cellular behavior: movement, morphogenesis and more. Cell 81: 1-4.
9. CHARDIN, P., S. PARIS, B. ANTONNY, S. ROBINEAU, S. BERAUD-DUFOUR et al., 1996 A human exchange factor for ARF contains Sec7- and pleckstrin-homology domains. Nature 384: 481-484.
10. CHERFILS, J., J. MENETRY, M. MATHIEU, G. LE BRAS, S. ROBINEAU et al., 1998 Structure of the Sec7 domain of Arf exchange factor ARNO. Nature 392: 101-105.
11. DASCHER, C., and W. E. BALCH, 1994 Dominant inhibitory mutants of ARF1 block endoplasmic reticulum to Golgi transport and trigger disassembly of the Golgi apparatus. J. Biol. Chem. 269: 1437-1448.
12. DEITZ, S. B., C. WU, S. SILVE, K. E. HOWELL, P. MELANCON et al., 1996 Human ARF4 expression rescues sec7 mutant yeast cells. Mol. Cell. Biol. 16: 3275-3284.
13. DONALDSON, J. G., D. FINAZZI and R. D. KLAUSNER, 1992 Brefeldin A inhibits Golgi membrane-catalysed exchange of guanine nucleotide onto ARF protein. Nature 360: 350-352.
14. D'SOUZA-SCHOREY, C., E. VAN DONSELAAR, V. W. HSU, C. YANG, P. D. STAHL et al., 1998 ARF6 targets recycling vesicles to the plasma membrane: insights from an ultrastructural investigation. J. Cell Biol. 140: 603-616.
15. ENOMOTO, S., G. CHEN and J. BERMAN, 1998 Vectors for expressing T7 epitope- and His6 affinity-tagged fusion proteins in S. cerevisiae. Biotechniques 24: 782-786.
16. ESMON, B., P. NOVICK and R. SCHEKMAN, 1981 Compartmentalized assembly of oligosaccharides on exported glycoproteins in yeast. Cell 25: 451-460.
17. FERRO-NOVICK, S., and R. JAHN, 1994 Vesicle fusion from yeast to man. Nature 370: 191-193.
18. FRANCO, M., P. CHARDIN, M. CHABRE and S. PARIS, 1996 Myristoylation-facilitated binding of the G protein ARFIGDP to membrane phospholipids is required for its activation by a soluble nucleotide exchange factor. J. Biol. Chem. 271: 1573-1578.
19. FRANK, S., S. UPENDER, S. H. HANSEN and J. E. CASANOVA, 1998 ARNO is a guanine nucleotide exchange factor for ADP-ribosylation factor 6. J. Biol. Chem. 273: 23-27.
20. FRANZUSOFF, A., and R. SCHEKMAN, 1989 Functional compartments of the yeast Golgi apparatus are defined by the sec7 mutation. EMBO J. 8: 2695-2702.
21. FRANZUSOFF, A., K. REDDING, J. CROSBY, S. R. FULLER and R. SCHEKMAN, 1989 Localization of components involved in protein transport and processing through the Yeast Golgi apparatus. J. Cell. Biol. 112: 27-37.
22. GAYNOR, E. C., C. Y. CHEN, S. D. EMR and T. R. GRAHAM, 1998 ARF is required for maintenance of yeast Golgi and endosome structure and function. Mol. Biol. Cell. 9: 653-670.
23. GIETZ, D., A. ST. JEAN, R. WOODS and R. SCHIESTL, 1992 Improved method for high efficiency transformation of intact yeast cells. Nucleic Acids Res. 20: 1425.
24. GOUD, B., A. SALMINEN, N. C. WALWORTH and P. NOVICK, 1988 A GTP-binding protein required for secretion rapidly associates with secretory vesicles and the plasma membrane in yeast. Cell 53: 753-768.
25. HAKES, D. J., and J. E. DIXON, 1992 New vectors for high level expression of recombinant proteins in bacteria. Anal. Biochem. 202: 293-298.
26. HELMS, J. B., and J. E. ROTHMAN, 1992 Inhibition by brefeldin A of a Golgi membrane enzyme that catalyses exchange of guanine nucleotide bound to ARF. Nature 360: 352-354.
27. HILL, J. E., A. M. MYERS, T. J. KOERNER and A. TZAGOLOFF, 1986 Yeast/E. coli shuttle vectors with multiple unique restriction sites. Yeast 2: 163-167.
28. JEDD, G., C. J. RICHARDSON, R. J. LITT and N. SEGEV, 1995 The Ypt1 GTPase is essential for the first two steps of the yeast secretory pathway. J. Cell Biol. 131: 583-590.
29. JEDD, G., J. MULHOLLAND and N. SEGEV, 1997 Two new Ypt GTPases are required for exit from the yeast trans-Golgi compartment. J. Cell Biol. 137: 563-580.
30. JONES, S., R. J. LITT, C. J. RICHARDSON and N. SEGEV, 1995 Requirement of nucleotide exchange for Ypt1 GTPase mediated protein transport. J. Cell Biol. 130: 1051-1061.
31. KAHN, R. A., J. CLARK, C. RULKA, T. STEARNS, C. J. ZHANG et al., 1995 Mutational analysis of Saccharomyces cerevisiae ARF1. J. Biol. Chem. 270: 143-150.
32. KAISER, C. A., and R. SCHEKMAN, 1990 Distinct sets of SEC genes govern transport vesicle formation and fusion early in the secretory pathway. Cell 61: 723-733.
33. KLARLUND, J. K., L. E. RAMEH, L. C. CANTLEY, J. M. BUXTON, J. J. HOLIK et al., 1998 Regulation of GRP1-catalyzed ADP ribosylation factor guanine nucleotide exchange by phosphatidylinositol 3,4,5-trisphosphate. J. Biol. Chem. 273: 1859-1862.
34. KLAUSNER, R. D., J. G. DONALDSON and J. LIPPINCOTT-SCHWARTZ, 1992 Brefeldin A: insights into the control of membrane traffic and organelle structure. J. Cell Biol. 116: 1071-1080.
35. KTISTAKIS, N. T., H. A. BROWN, M. G. WATERS, P. C. STERNWEIS and M. G. ROTH, 1996 Evidence that phospholipase D mediates ADP ribosylation factor-dependent formation of Golgi coated vesicles. J. Cell Biol. 134: 295-306.
36. LAZAR, T., M. GOTTE and D. GALLWITZ, 1997 Vesicular transport: how many Ypt/Rab-GTPases make a eukaryotic cell? Trends Biochem. Sci. 22: 468-472.
37. LEE, F. J., L. A. STEVENS, Y. L. KAO, J. Moss and M. VAUGHAN, 1994 Characterization of a glucose-repressible ADP-ribosylation factor 3 (ARF3) from Saccharomyces cerevisiae. J. Biol. Chem. 269: 20931-20937.
38. LUPASHIN, V. V., S. HAMAMOTO and R. W. SCHEKMAN, 1996 Biochemical requirements for the trageting and fusion of ER-derived transport vesicles with purified yeast Golgi membranes. J. Cell Biol. 132: 277-289.
39. MEACCI, E., S. C. TSAI, R. ADAMIK, J. Moss and M. VAUGHAN, 1997 Cytohesin-1, a cytosolic guanine nucleotide-exchange protein for ADP-ribosylation factor. Proc. Natl. Acad. Sci. USA 94: 1745-1748.
40. MORINAGA, N., J. MOSS and M. VAUGHAN, 1997 Cloning and expression of a cDNA encoding a bovine brain brefeldin A-sensitive guanine nucleotide-exchange protein for ADP-ribosylation factor. Proc. Natl. Acad. Sci. USA 94: 12926-12931.
41. MOSSESSOVA, E., J. M. GULIBS and J. GOLDBERG, 1998 Structure of the guanine nucleotide exchange factor Sec7 domain of human Arno and analysis of the interaction with Arf GTPase. Cell 92: 415-423.
42. NOVICK, P., and M. ZERIAL, 1997 The diversity of Rab proteins in vesicle transport. Curr. Opin. Cell Biol. 9: 496-504.
43. ORCI, L., M. TAGAYA, M. AMHERDT, A. PERRELET, J. G. DONALDSON et al., 1991 Brefeldin A, a drug that blocks secretion, prevents the assembly of non-clathrin-coated buds on Golgi cisternae. Cell 64: 1183-1195.
44. PALADE, G., 1975 Intracellular aspects of the process of protein synthesis. Science 189: 347-358.
45. PEYROCHE, A., S. PARIS and C. L. JACKSON, 1996 Nucleotide exchange on ARF mediated by yeast Gea1 protein. Nature 384: 479-481.
46. RANDAZZO, P. A., O. WEISS and R. A. KAHN, 1995 Preparation of recombinant ADP-ribosylation factor. Methods Enzymol. 257: 128-135.
47. REXACH, M. F., and R. W. SCHEKMAN, 1991 Distinct biochemical requirements for the budding, targeting, and fusion of ER-derived transport vesicles. J. Cell Biol. 114: 219-229.
48. ROSE, M., F. WINSTON and P. HEITER, 1988 Methods in Yeast Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
49. ROTHMAN, J. E., and F. T. WIELAND, 1996 Protein sorting by transport vesicles. Science 272: 227-234.
50. SATA, M., J. G. DONALDSON, J. MOSS and M. VAUGHAN, 1998 Brefeldin A-inhibited guanine nucleotide-exchange activity of Sec7 domain from yeast Sec7 with yeast and mammalian ADP ribosylation factors. Proc. Natl. Acad. Sci. USA 95: 4204-4208.
51. SCHEKMAN, R., and L. ORCI, 1996 Coat proteins and vesicle budding. Science 271: 1526-1538.
52. SCHULER, G. D., S. F. ALTSCHUL and D. J. LIPMAN, 1991 A workbench for multiple alignment construction and analysis. Proteins: structure, function, and genetics 9: 180-190.
53. SEGEV, N., 1991 Mediation of the attachment or fusion step in vesicular transport by the GTP-binding Ypt1 protein. Science 252: 1553-1556.
54. SEGEV, N., J. MULHOLLAND and D. BOTSTEIN, 1988 The yeast GTP-binding YPT1 protein and a mammalian counterpart are associated with the secretion machinery. Cell 52: 915-924.
55. SEWELL, J. L., and R. A. KAHN, 1988 Sequences of the bovine and yeast ADP-ribosylation factor and comparison to other GTP-binding proteins. Proc. Natl. Acad. Sci. USA 85: 4620-4624.
56. STEARNS, T., M. C. WILLINGHAM, D. BOTSTEIN and R. KAHN, 1990 ADP-ribosylation factor is functionally and physically associated with the Golgi complex. Proc. Natl. Acad. Sci. USA 87: 1238-1242.
57. STEVENS, T., B. ESMON and R. SCHEKMAN, 1982 Early stages in the yeast secretory pathway are required for transport of carboxypeptidase Y to the vacuole. Cell 30: 439-448.
58. TAYLOR, T. C., R. A. KAHN and P. MELANCON, 1992 Two distinct members of the ADP-ribosylation factor family of GTP-binding proteins regulate cell-free intra-Golgi transport. Cell 70: 69-79.
59. WACH, A., A. BRACHAT, R. POHLMANN and P. PHILIPPSEN, 1994 New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast 10: 1793-1808.
60. WOLF, J., M. NICKS, S. DEITZ, E. VAN TUINEN and A. FRANZUSOFF, 1998 An N-end rule destabilization mutant reveals pre-Golgi requirements for Sec7p in yeast membrane traffic. Biochem. Biophys. Res. Commun. 1243: 191-198.
61. ZHANG, C. J., A. G. ROSENWALD, M. C. WILLINGHAM, S. SKUNTZ, J. CLARK et al., 1994 Expression of a dominant allele of human ARF1 inhibits membrane traffic in vivo. J. Cell Biol. 124: 289-300.
62. ZHAO, L., J. B. HELMS, B. BRUGGER, C. HARTER, B. MARTOGLIO et al., 1997 Direct and GTP-dependent interaction of ADP ribosylation factor 1 with coatomer subunit beta. Proc. Natl. Acad. Sci. USA 94: 4418-4423.
63. ZHENG, Y., R. CERIONE and A. BENDER, 1994 Control of the yeast bud-site assembly GTPase Cdc42. Catalysis of guanine nucleotide exchange by Cdc24 and stimulation of GTPase activity by Bem3. J. Biol. Chem. 269: 2369-2372.
64. ZHENG, Y., A. BENDER and R. A. CERIONE, 1995 Interactions among proteins involved in bud-site selection and bud-site assembly in Saccharomyces cerevisiae. J. Biol. Chem. 270: 626-630.