Phylogenetic position of Phthiraptera (Insecta: Paraneoptera) and elevated rate of evolution in mitochondrial 12S and 16S rDNA

Molecular Phylogenetics and Evolution

Volumn 29, Issue 1, 2003, Pages 102-114

  Yoshizawa, Kazunori ^a   Johnson, Kevin P ^b  

^a HOKKAIDO UNIVERSITY   (Japan)

^b UNIVERSITY OF ILLINOIS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANOPLURA; INSECTA; LIPOSCELIDAE; PARANEOPTERA; PHTHIRAPTERA; PSOCOPTERA;

EID: 0344961783     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1055-7903(03)00073-3     Document Type: Article

References (59)

1. Barker, S.C., 1994. Phylogeny and classification, origins, and evolution of host associations of lice. Int. J. Parasitol. 24, 1285-1291.
2. Barker, F.K., Lutzoni, F.M., 2002. The utility of the incongruence length difference test. Syst. Biol. 51, 625-637.
3. Buckley, T.R., Simon, C., Flook, P.K., Misof, B., 2000. Secondary structure and conserved motifs of the frequently sequenced domains IV and V of the insect mitochondrial large subunit rRNA gene. Insect Mol. Biol. 9, 565-580.
4. Bull, J.J., Huelsenbeck, J.P., Cunningham, C.W., Swofford, D.L., Waddell, P.J., 1993. Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42, 384-397.
5. Cruickshank, R.H., Johnson, K.P., Smith, V.S., Adams, R.J., Clayton, D.H., Page, R.D.M., 2001. Phylogenetic analysis of partial sequences of elongation factor 1α identifies major groups of lice (Insecta: Phthiraptera). Mol. Phylogenet. Evol. 19, 202-215.
6. Darlu, P., Lecointre, G., 2002. When does the incongruence length difference test fail. Mol. Biol. Evol. 19, 432-437.
7. Dotson, E.M., Beard, C.B., 2001. Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiata. Insect Mol. Biol. 10, 205-215.
8. Dowton, M., Austin, A.D., 1997. Evidence for AT-transversion bias in wasp (Hymenoptera: Symphyta) mitochondrial genes and its implications for the origin of parasitism. J. Mol. Evol. 44, 398-405.
9. Estabrook, G.F., 1992. Evaluating undirected positional congruence of individual taxa between two estimates of the phylogenetic tree from a group of taxa. Syst. Biol. 41, 172-177.
10. Farris, J.S., Kallersjo, M., Kluge, A.G., Bult, C., 1994. Testing significance of congruence. Cladistics 10, 315-320.
11. Farris, J.S., Kallersjo, M., Kluge, A.G., Bult, C., 1995. Constructing a significance test for incongruence. Syst. Biol. 44, 570-572.
12. Galtier, N., Gouy, M., 1995. Inferring phylogenies from DNA sequences of unequal base compositions. Proc. Natl. Acad. Sci. USA 92, 11317-11321.
13. Gatesy, J., DeSalle, R., Wheeler, W., 1993. Alignment-ambiguous nucleotide sites and the exclusion of systematic data. Mol. Phylogenet. Evol. 2, 152-157.
14. Hafner, M.S., Sudman, P.D., Villablanca, F.X., Spradling, T.A., Demastes, J.W., Nadler, S.A., 1994. Disparate rates of molecular evolution in cospeciating hosts and parasites. Science 265, 1087-1090.
15. Hickson, R.E., Simon, C., Perrey, S.W., 2000. The performance of several multiple sequence alignment programs in relation to secondary-structure features for a rRNA sequence. Mol. Biol. Evol. 17, 530-539.
16. Johnson, K.P., Cruickshank, R.H., Adams, R.J., Smith, V.S., Page, R.D.M., Clayton, D.H., 2003. Dramatically elevated rate of mitochondrial substitution in lice (Insecta: Phthiraptera) Mol. Phylogenet. Evol. 26, 231-242.
17. Johnson, K.P., Weckstein, J.D., Witt, C.C., Faucett, R.C., Moyle, R.G., 2002. The perils of using host relationships in parasite taxonomy: phylogeny of the Degeeriella complex. Mol. Phylogenet. Evol. 23, 150-157.
18. Johnson, K.P., Whiting, M.F., 2002. Multiple genes and the monophyly of Ischnocera (Insecta: Phthiraptera). Mol. Phylogenet. Evol. 22, 101-110.
19. Kimura, M., 1983. The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge.
20. Kristensen, N.P., 1995. Forty years' insect phylogenetic systematics. Hennig's "Kritische Bemerkungen..." and subsequent developments. Zool. Beit. N. F. 36, 83-124.
21. Lee, M.S.Y., 2001. Unalignable sequences and molecular evolution. Trends Ecol. Evol. 16, 681-685.
22. Lockhart, P.J., Steel, M.A., Hendy, M.D., Penny, D., 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11, 605-612.
23. Lyal, C.H.C., 1985. Phylogeny and classification of the Psocodea, with particular reference to the lice (Psocodea: Phthiraptera). Syst. Entomol. 10, 145-165.
24. Marshall, A.G., 1981. The Ecology of Ectoparasitic Insects. Academic Press, London.
25. Nadler, S.A., Hafner, M.S., Hafner, J.C., Hafner, D.J., 1990. Genetic differentiation among chewing louse populations (Mallophaga: Trichodectidae) in a pocket gopher contact zone (Rodentia: Geomyidae). Evolution 44, 942-951.
26. New, T.R., 1987. Biology of the Psocoptera. Oriental Insects 21, 1-109.
27. Ohta, T., 1972. Population size and rate of evolution. J. Mol. Evol. 1, 305-314.
28. Ohta, T., 1973. Slightly deleterious mutant substitutions in evolution. Nature 246, 96-98.
29. Ohta, T., 1974. Mutational pressure as the main cause of molecular evolution and polymorphism. Nature 252, 351-354.
30. Ohta, T., 1987. Very slightly deleterious mutations and the molecular clock. J. Mol. Evol. 26, 1-6.
31. Ohta, T., 1992. The nearly neutral theory of molecular evolution. Annu. Rev. Ecol. Syst. 23, 263-286.
32. Olsen, G.J., Woese, C.R., 1993. Ribosomal RNA: a key to phylogeny. FASEB J. 7, 113-123.
33. Page, R.D.M., Cruickshank, R., Johnson, K.P., 2002. Louse (Insecta: Phthiraptera) mitochondrial 12S rRNA secondary structure is highly variable. Insects Mol. Biol. 11, 361-369.
34. Page, R.D.M., Lee, P.L.M., Becher, S.A., Griffiths, R., Clayton, D.H., 1998. A different tempo of mitochondrial DNA evolution in birds and their parasitic lice. Mol. Phylogenet. Evol. 9, 276-293.
35. Paterson, A.M., Wallis, G.P., Wallis, L.J., Gray, R.D., 2000. Seabird and louse coevolution: complex histories revealed by 12S rRNA sequences and reconciliation analysis. Syst. Biol. 49. 383-399.
36. Posada, D., Crandall, K.A., 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818.
37. Rand, D.M., 1994. Thermal habit, metabolic rate, and the evolution of mitochondrial DNA. Trends Ecol. Evol. 9, 125-131.
38. Rudolph, D., 1982. Occurrence, properties, and biological implications of the active uptake of water vapour from the atmosphere in the Psocoptera. J. Insect Physiol. 28, 111-121.
39. Rudolph, D., 1983. The water-vapour uptake system of the Phthiraptera. J. Insect Physiol. 29, 15-25.
40. Seeger, W., 1979. Spezialmerkmale an Eihüllen und Embryonen von Psocoptera im Vergleich zu anderen Paraneoptera (Insecta): Psocoptera als monophyletische Gruppe. Stutt. Beit. Natur. (A) 329, 1-57.
41. Shao, R., Campbell, N.J.H., Barker, S.C., 2001a. Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera). Mol. Biol. Evol. 18, 858-865.
42. Shao, R., Campbell, N.J.H., Schmidt, E.R., Barker, S.C., 2001b. Increased rate of gene rearrangement in the mitochondrial genomes of three orders of hemmipteroid insects. Mol. Biol. Evol. 18, 1828-1832.
43. Shimodaira, H., Hasegawa, M., 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16, 1114-1116.
44. Simon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H., Flook, P., 1994. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87, 651-701.
45. Simmons, R.B., Weller, S.J., 2001. Utility and evolution of cytochrome b in insects. Mol. Phylogenet. Evol. 20, 196-210.
46. Smithers, C.N., 1996. Psocoptera. In: Wells, A. (Ed.), Psocoptera, Phthiraptera, Thysanoptera, Vol. 26. CSIRO, Melbourne, pp. 1-79.
47. Swofford, D.L., 2002. PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4, Sinauer Assoc., Sunderland, MA.
48. Swofford, D.L., Olsen, G.J., Waddell, P.J., Hillis, D.M., 1996. Phylogenetic inference. In: Hillis, D.M. et al. (Eds.), Molecular systematics. Sinauer, Sunderland, MA.
49. Tamura, K., 1992. The rate and pattern of nucleotide substitution in Drosophila mitochondrial DNA. Mol. Biol. Evol. 9, 814-825.
50. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
51. Thorley, J.L., Page, R.D.M., 2000. RadCon: phylogenetic tree comparison and consensus. Bioinformatics 16, 486-487.
52. Tsutsumi, C., 1962. Studies on the domiciliary psocids of Japan (I). Jpn. J. Sanit. Zool. 13, 190-196.
53. Waage, J.K., 1979. The evolution of insect/vertebrate associations. Biol. J. Linn. Soc. 12, 187-224.
54. Wheeler, W.C., Whiting, M., Wheeler, Q.D., Carpenter, J.M., 2001. The phylogeny of the extant hexapod orders. Cladistics 17, 113-169.
55. Yang, Z., 1998. On the best evolutionary rate for phylogenetic analysis. Syst. Biol. 47, 125-133.
56. Yoshizawa, K., 2002. Phylogeny and higher classification of suborder Psocomorpha (Insecta: Psocodea: 'Psocoptera'). Zool. J. Linn. Soc. 136, 371-400.
57. Yoshizawa, K., Saigusa, T., 2001. Phylogenetic analysis of paraneopteran orders (Insecta: Neoptera) based on forewing base structure, with comments on monophyly of Auchenorrhyncha (Hemiptera). Syst. Entomol. 26, 1-13.
58. Zucker, M., 1989. Computer prediction of RNA structure. Methods Enzymol. 180, 262-288.
59. Zucker, M., Jaeger, J. A., Turner, D.H., 1991. A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison. Nucleic Acid Res. 19, 2707-2714.