메뉴 건너뛰기




Volumn 23, Issue 6, 1997, Pages 1267-1279

DNA topology in hyperthermophilic archaea: Reference states and their variation with growth phase, growth temperature, and temperature stresses

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GROWTH; CONTROLLED STUDY; DNA STRUCTURE; DNA SUPERCOILING; HEAT STRESS; NONHUMAN; PLASMID; PRIORITY JOURNAL; TEMPERATURE; THERMOPHILIC BACTERIUM;

EID: 0030956537     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1997.3051668.x     Document Type: Article
Times cited : (72)

References (47)
  • 1
    • 0023430342 scopus 로고
    • Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli
    • Balke, V.L., and Gralla, J.D. (1987) Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli. J Bacteriol 169: 4499-4506.
    • (1987) J Bacteriol , vol.169 , pp. 4499-4506
    • Balke, V.L.1    Gralla, J.D.2
  • 2
    • 0003564812 scopus 로고
    • DNA supercoiling
    • Rickwood, D. (ed.). Oxford: IRL Press
    • Bates, A.D., and Maxwell, A. (1993) DNA supercoiling. In DNA Topology. 'In Focus' Series. Rickwood, D. (ed.). Oxford: IRL Press, pp. 17-45.
    • (1993) DNA Topology. 'In Focus' Series , pp. 17-45
    • Bates, A.D.1    Maxwell, A.2
  • 3
    • 0017795493 scopus 로고
    • Structure and reactions of closed duplex DNA
    • Bauer, W.R. (1978) Structure and reactions of closed duplex DNA. Annu Rev Biophys Bioeng 7: 287-313.
    • (1978) Annu Rev Biophys Bioeng , vol.7 , pp. 287-313
    • Bauer, W.R.1
  • 4
    • 0027960665 scopus 로고
    • Purification of a DNA topoisomerase II from the hyperthermophilic archaeon Sulfolobus shibatae
    • Bergerat, A., Gadelle, D., and Forterre, P. (1994) Purification of a DNA topoisomerase II from the hyperthermophilic archaeon Sulfolobus shibatae. J Biol Chem 44: 27663-27669.
    • (1994) J Biol Chem , vol.44 , pp. 27663-27669
    • Bergerat, A.1    Gadelle, D.2    Forterre, P.3
  • 5
    • 0028345358 scopus 로고
    • Comparison of plasmid DNA topology among mesophilic and thermophilic eubacteria and archaebacteria
    • Charbonnier, F., and Forterre, P. (1994) Comparison of plasmid DNA topology among mesophilic and thermophilic eubacteria and archaebacteria. J Bacteriol 176: 1251-1259.
    • (1994) J Bacteriol , vol.176 , pp. 1251-1259
    • Charbonnier, F.1    Forterre, P.2
  • 6
    • 0026775677 scopus 로고
    • Evidence that a plasmid from a hyperthermophilic archaebacterium is relaxed at physiological temperatures
    • Charbonnier, F., Erauso, G., Barbeyron, T., Prieur, D., and Forterre, P. (1992) Evidence that a plasmid from a hyperthermophilic archaebacterium is relaxed at physiological temperatures. J Bacteriol 174: 6103-6108.
    • (1992) J Bacteriol , vol.174 , pp. 6103-6108
    • Charbonnier, F.1    Erauso, G.2    Barbeyron, T.3    Prieur, D.4    Forterre, P.5
  • 7
    • 0000744136 scopus 로고
    • Conformational fluctuations of DNA helix
    • Depew, R.E., and Wang, U.C. (1975) Conformational fluctuations of DNA helix. Proc Natl Acad Sci USA 72: 4275-4279.
    • (1975) Proc Natl Acad Sci USA , vol.72 , pp. 4275-4279
    • Depew, R.E.1    Wang, U.C.2
  • 8
    • 0012230376 scopus 로고
    • RNA extraction from sulphur-utilizing thermophilic archaebacteria
    • Place, E.M., Robb, F.T., and Scheir, H.J. (eds). Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press
    • DiRuggiero, J., and Robb, FT. (1995) RNA extraction from sulphur-utilizing thermophilic archaebacteria. In Archaea: A Laboratory Manual. Place, E.M., Robb, F.T., and Scheir, H.J. (eds). Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press, pp. 97-100.
    • (1995) Archaea: A Laboratory Manual , pp. 97-100
    • DiRuggiero, J.1    Robb, F.T.2
  • 9
    • 0029036349 scopus 로고
    • DNA topology and the global control of bacterial gene expression: Implications for the regulation of virulence gene expression
    • Dorman, C.J. (1995) DNA topology and the global control of bacterial gene expression: implications for the regulation of virulence gene expression. Microbiology 141: 1271-1280.
    • (1995) Microbiology , vol.141 , pp. 1271-1280
    • Dorman, C.J.1
  • 10
    • 0030161428 scopus 로고    scopus 로고
    • Flexible response: DNA supercoiling, transcription and bacterial adaptation to environmental stress
    • Dorman, C.J. (1996) Flexible response: DNA supercoiling, transcription and bacterial adaptation to environmental stress. Trends Microbiol 4: 214-216.
    • (1996) Trends Microbiol , vol.4 , pp. 214-216
    • Dorman, C.J.1
  • 11
    • 0024024835 scopus 로고
    • DNA supercoiling and the anaerobic and growth phase regulation of tonB gene expression
    • Dorman, C.J., Barr, G.C., Ni Bhrian, N., and Higgins, C.F. (1988) DNA supercoiling and the anaerobic and growth phase regulation of tonB gene expression. J Bacteriol 170: 2816-2826.
    • (1988) J Bacteriol , vol.170 , pp. 2816-2826
    • Dorman, C.J.1    Barr, G.C.2    Ni Bhrian, N.3    Higgins, C.F.4
  • 12
    • 0025342874 scopus 로고
    • DNA supercoiling and environmental regulation of virulence gene expression in Shigella flexneri
    • Dorman, C.J., Ni Bhriain, N., and Higgins, C.F. (1990) DNA supercoiling and environmental regulation of virulence gene expression in Shigella flexneri. Nature 344: 789-792.
    • (1990) Nature , vol.344 , pp. 789-792
    • Dorman, C.J.1    Ni Bhriain, N.2    Higgins, C.F.3
  • 13
    • 0026555506 scopus 로고
    • Control of bacterial DNA supercoiling
    • Drlica, K. (1992) Control of bacterial DNA supercoiling. Mol Microbiol 6: 425-433.
    • (1992) Mol Microbiol , vol.6 , pp. 425-433
    • Drlica, K.1
  • 14
    • 0023413620 scopus 로고
    • Histone-like proteins of bacteria
    • Drlica, K., and Rouvière-Yaniv, J. (1987) Histone-like proteins of bacteria. Microbiol Rev 51: 301-319.
    • (1987) Microbiol Rev , vol.51 , pp. 301-319
    • Drlica, K.1    Rouvière-Yaniv, J.2
  • 15
    • 0027238534 scopus 로고
    • The helical repeat of DNA at high temperature
    • Duguet, M. (1993) The helical repeat of DNA at high temperature. Nucl Acids Res 21: 463-468.
    • (1993) Nucl Acids Res , vol.21 , pp. 463-468
    • Duguet, M.1
  • 16
    • 0001788453 scopus 로고
    • Reverse gyrase
    • Eckstein, F., and Lilley, D.M.J. (eds.). Berlin-Heidelberg: Springer-Verlag
    • Duguet, M. (1995) Reverse gyrase. In Nucleic Acids and Molecular Biology. Vol. 9. Eckstein, F., and Lilley, D.M.J. (eds.). Berlin-Heidelberg: Springer-Verlag, pp. 84-114.
    • (1995) Nucleic Acids and Molecular Biology , vol.9 , pp. 84-114
    • Duguet, M.1
  • 18
    • 0026514577 scopus 로고
    • Preliminary characterization of an hyperthermophilic archaebacterium with a plasmid, isolated from a North Fiji basin hydrothermal vent
    • Erauso, G., Charbonnier, F., Barbeyron, T., Forterre, P., and Prieur, D. (1992) Preliminary characterization of an hyperthermophilic archaebacterium with a plasmid, isolated from a North Fiji basin hydrothermal vent. CR Acad Sci Paris 314: 387-393.
    • (1992) CR Acad Sci Paris , vol.314 , pp. 387-393
    • Erauso, G.1    Charbonnier, F.2    Barbeyron, T.3    Forterre, P.4    Prieur, D.5
  • 19
    • 0000239569 scopus 로고
    • High positive supercoiling in vitro catalysed by an ATP and polyethylene glycol-stimulated topoisomerase from Sulfolobus acidocaldarius
    • Forterre, P., Mirambeau, G., Jaxel, C., Nadal, M., and Duguet, M. (1985) High positive supercoiling in vitro catalysed by an ATP and polyethylene glycol-stimulated topoisomerase from Sulfolobus acidocaldarius. EMBO J 4: 2123-2128.
    • (1985) EMBO J , vol.4 , pp. 2123-2128
    • Forterre, P.1    Mirambeau, G.2    Jaxel, C.3    Nadal, M.4    Duguet, M.5
  • 20
    • 0026677793 scopus 로고
    • Chromosome structure and DNA topology in extremely thermophilic archaebacteria
    • Forterre, P., Charbonnier, F., Marguet, E., Harper, F., and Henckes, G. (1992) Chromosome structure and DNA topology in extremely thermophilic archaebacteria. Biochem Soc Symp 58: 99-112.
    • (1992) Biochem Soc Symp , vol.58 , pp. 99-112
    • Forterre, P.1    Charbonnier, F.2    Marguet, E.3    Harper, F.4    Henckes, G.5
  • 21
    • 0004738888 scopus 로고
    • Regulation of bacterial DNA supercoiling: Plasmid linking numbers vary with growth temperature
    • Goldstein, E., and Drlica, K. (1984) Regulation of bacterial DNA supercoiling: plasmid linking numbers vary with growth temperature. Proc Natl Acad Sci USA 81: 4046-4050.
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 4046-4050
    • Goldstein, E.1    Drlica, K.2
  • 22
    • 0028264505 scopus 로고
    • DNA supercoiling and thermal regulation of unsaturated fatty acid synthesis in Bacillus subtilis
    • Grau, R., Gardiol, D., Glikin, G.C., and de Mendoza, D. (1994) DNA supercoiling and thermal regulation of unsaturated fatty acid synthesis in Bacillus subtilis. Mol Microbiol 11: 933-941.
    • (1994) Mol Microbiol , vol.11 , pp. 933-941
    • Grau, R.1    Gardiol, D.2    Glikin, G.C.3    De Mendoza, D.4
  • 23
    • 0030012909 scopus 로고    scopus 로고
    • Histones and chromatin structure in hyperthermophilic Archaea
    • Grayling, R.A., Sandman, K., and Reeve, J.N. (1996) Histones and chromatin structure in hyperthermophilic Archaea. FEMS Microbiol Rev 18: 203-213.
    • (1996) FEMS Microbiol Rev , vol.18 , pp. 203-213
    • Grayling, R.A.1    Sandman, K.2    Reeve, J.N.3
  • 24
    • 0001918632 scopus 로고
    • Environmental influences on DNA supercoiling: A novel mechanism for the regulation of gene expression
    • Drlica, K., and Riley, M (eds). Washington, DC: American Society for Microbiology Press
    • Higgins, C.F., Dorman, C.J., and Ni Bhriain, N. (1990) Environmental influences on DNA supercoiling: a novel mechanism for the regulation of gene expression. In The Bacterial Chromosome. Drlica, K., and Riley, M (eds). Washington, DC: American Society for Microbiology Press, pp. 421-432.
    • (1990) The Bacterial Chromosome , pp. 421-432
    • Higgins, C.F.1    Dorman, C.J.2    Ni Bhriain, N.3
  • 25
    • 0025962676 scopus 로고
    • Mutations in DNA gyrase result in novobiocin resistance in halophilic archaebacteria
    • Holmes, M.L., and Dyall-Smith, M.L. (1991) Mutations in DNA gyrase result in novobiocin resistance in halophilic archaebacteria. J Bacteriol 173: 642-648.
    • (1991) J Bacteriol , vol.173 , pp. 642-648
    • Holmes, M.L.1    Dyall-Smith, M.L.2
  • 26
    • 0026641172 scopus 로고
    • DNA gyrase, CS7.4, and the cold shock response in Escherichia coli
    • Jones, P., Krah, R., Tafuri, A.R., and Wolffe, A.P. (1992) DNA gyrase, CS7.4, and the cold shock response in Escherichia coli. J Bacteriol 174: 5798-5802.
    • (1992) J Bacteriol , vol.174 , pp. 5798-5802
    • Jones, P.1    Krah, R.2    Tafuri, A.R.3    Wolffe, A.P.4
  • 28
    • 0001074488 scopus 로고
    • Determination of the number of superhelical turns in siman virus 40 DNA by gel electrophoresis
    • Keller, W. (1975) Determination of the number of superhelical turns in siman virus 40 DNA by gel electrophoresis. Proc Natl Acad Sci USA 72: 4876-4880.
    • (1975) Proc Natl Acad Sci USA , vol.72 , pp. 4876-4880
    • Keller, W.1
  • 29
    • 0021154312 scopus 로고
    • Reverse gyrase, a topoisomerase which introduces positive superhelical turns into DNA
    • Kikuchi, A., and Asai, K. (1984) Reverse gyrase, a topoisomerase which introduces positive superhelical turns into DNA. Nature 309: 677-681.
    • (1984) Nature , vol.309 , pp. 677-681
    • Kikuchi, A.1    Asai, K.2
  • 30
    • 0026727120 scopus 로고
    • Chromatin structure and transcription
    • Kornberg, R., and Lorch, Y. (1992) Chromatin structure and transcription. Annu Rev Cell Biol 8: 563-587.
    • (1992) Annu Rev Cell Biol , vol.8 , pp. 563-587
    • Kornberg, R.1    Lorch, Y.2
  • 31
    • 0028834850 scopus 로고
    • Changes in DNA supertwist as a response of Bacillus subtilis towards different kinds of stress
    • Krispin, O., and Allmansberger, R. (1995) Changes in DNA supertwist as a response of Bacillus subtilis towards different kinds of stress. FEMS Microbiol Lett 134: 129-135.
    • (1995) FEMS Microbiol Lett , vol.134 , pp. 129-135
    • Krispin, O.1    Allmansberger, R.2
  • 32
    • 0021112063 scopus 로고
    • Positively supercoiled plasmid DNA is produced by treatment of Escherichia coli with DNA gyrase inhibitors
    • Lockshon, D., and Morris, D.R. (1983) Positively supercoiled plasmid DNA is produced by treatment of Escherichia coli with DNA gyrase inhibitors. Nucl Acids Res 11: 2999-3017.
    • (1983) Nucl Acids Res , vol.11 , pp. 2999-3017
    • Lockshon, D.1    Morris, D.R.2
  • 33
    • 0027971436 scopus 로고
    • Lett-handed Z-DNA and in vivo supercoil density in the Escherichia coli chromosome
    • Lukomski, S., and Wells, R.D. (1994) Lett-handed Z-DNA and in vivo supercoil density in the Escherichia coli chromosome. Proc Natl Acad Sci USA 91: 9980-9984.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9980-9984
    • Lukomski, S.1    Wells, R.D.2
  • 34
    • 0030586777 scopus 로고    scopus 로고
    • Plasmid linking number decrease in the hyperthermophilic archaeon Pyrococcus abyssi upon temperature downshift
    • Marguet, E., Zivanovic, Y., and Forterre, P. (1996) Plasmid linking number decrease in the hyperthermophilic archaeon Pyrococcus abyssi upon temperature downshift. FEMS Microbiol Lett 142: 31-36.
    • (1996) FEMS Microbiol Lett , vol.142 , pp. 31-36
    • Marguet, E.1    Zivanovic, Y.2    Forterre, P.3
  • 35
    • 0028822116 scopus 로고
    • Phenotypic characterization, DNA similarities, and protein profiles of twenty sulphur-metabolizing hyperthermophilic anaerobic archaea isolated from hydrothermal vents in the southwestern Pacific ocean
    • Marteinsson, V.T., Watrin, L., Prieur, D., Caprais, J.C., Raguénès, G., and Erauso, G. (1995) Phenotypic characterization, DNA similarities, and protein profiles of twenty sulphur-metabolizing hyperthermophilic anaerobic archaea isolated from hydrothermal vents in the southwestern Pacific ocean. Int J System Bacteriol 45: 623-632.
    • (1995) Int J System Bacteriol , vol.45 , pp. 623-632
    • Marteinsson, V.T.1    Watrin, L.2    Prieur, D.3    Caprais, J.C.4    Raguénès, G.5    Erauso, G.6
  • 36
    • 0027158654 scopus 로고
    • Relaxation of supercoiled DNA associated with induction of heat shock proteins in Escherichia coli
    • Mizushima, T., Natori, S., and Sekimizu, K. (1993) Relaxation of supercoiled DNA associated with induction of heat shock proteins in Escherichia coli. Mol Gen Genet 238: 1-5.
    • (1993) Mol Gen Genet , vol.238 , pp. 1-5
    • Mizushima, T.1    Natori, S.2    Sekimizu, K.3
  • 37
    • 0027999001 scopus 로고
    • Effects of salt and temperature on plasmid topology in the halophilic archaeon Haloferax volcanii
    • Mojica, F.J.M., Charbonnier, F., Juez, G., Rodriguez-Valera, F., and Forterre, P. (1994) Effects of salt and temperature on plasmid topology in the halophilic archaeon Haloferax volcanii. J Bacteriol 176: 4966-4973.
    • (1994) J Bacteriol , vol.176 , pp. 4966-4973
    • Mojica, F.J.M.1    Charbonnier, F.2    Juez, G.3    Rodriguez-Valera, F.4    Forterre, P.5
  • 38
    • 0022449038 scopus 로고
    • Positively supercoiled DNA in a virus-like particle of an archaebacterium
    • Nadal, M., Mirambeau, G., Forterre, P., Reiter, W.D., and Duguet, M. (1986) Positively supercoiled DNA in a virus-like particle of an archaebacterium. Nature 321: 256-258.
    • (1986) Nature , vol.321 , pp. 256-258
    • Nadal, M.1    Mirambeau, G.2    Forterre, P.3    Reiter, W.D.4    Duguet, M.5
  • 39
    • 0028291990 scopus 로고
    • Thermoregulation in Yersinia enterocolitica is coincident with changes in DNA supercoiling
    • Rohde, J.R., Fox, J.M., and Minnich, S.A. (1992) Thermoregulation in Yersinia enterocolitica is coincident with changes in DNA supercoiling. Mol Microbiol 12: 187-199.
    • (1992) Mol Microbiol , vol.12 , pp. 187-199
    • Rohde, J.R.1    Fox, J.M.2    Minnich, S.A.3
  • 40
    • 0023046695 scopus 로고
    • Both DNA topoisomerases I and II relax 2 μm plasmid DNA in living yeast cells
    • Saavedra, R.A., and Huberman, J.A. (1986) Both DNA topoisomerases I and II relax 2 μm plasmid DNA in living yeast cells. Cell 45: 65-70.
    • (1986) Cell , vol.45 , pp. 65-70
    • Saavedra, R.A.1    Huberman, J.A.2
  • 41
    • 0018962604 scopus 로고
    • Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: Analogous measurements in insect and human cells
    • Sinden, R.R., Carlson, J.O., and Pettijohn, D.E. (1980) Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells. Cell 21: 773-783.
    • (1980) Cell , vol.21 , pp. 773-783
    • Sinden, R.R.1    Carlson, J.O.2    Pettijohn, D.E.3
  • 42
    • 0025234729 scopus 로고
    • Acquired thermotolerance and heat shock in the extremely thermophilic archaebacterium Sulfolobus sp. strain B12
    • Trent, J.D., Osipiuk, J., and Pinkau, T. (1990) Acquired thermotolerance and heat shock in the extremely thermophilic archaebacterium Sulfolobus sp. strain B12. J Bacteriol 172: 1478-1484.
    • (1990) J Bacteriol , vol.172 , pp. 1478-1484
    • Trent, J.D.1    Osipiuk, J.2    Pinkau, T.3
  • 43
    • 0023225704 scopus 로고
    • Recent studies of DNA topoisomerases
    • Wang, J.C. (1987) Recent studies of DNA topoisomerases. Biochim Biophys Acta 909: 1-9.
    • (1987) Biochim Biophys Acta , vol.909 , pp. 1-9
    • Wang, J.C.1
  • 44
    • 0027436353 scopus 로고
    • Transcription and DNA supercoiling
    • Wang, J.C., and Lynch, A.S. (1993) Transcription and DNA supercoiling. Curr Op Genet Develop 3: 764-768.
    • (1993) Curr Op Genet Develop , vol.3 , pp. 764-768
    • Wang, J.C.1    Lynch, A.S.2
  • 45
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese, C.R., Kandler, O., and Wheelis, M.L. (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87: 4576-4579.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 46
    • 0009618444 scopus 로고
    • Screening for Sulfolobales, their plasmids and their viruses, in icelandic solfataras
    • Pfeifer, F., Palm, P., and Schleifer, K.-H. (eds). Stuttgart: Gustav Fisher Verlag
    • Zillig, W., Kletzin, A., Schleper, C., Holz, I., Janekovic, D., Hain, J., Lanzendörfer, M., and Kristjansson, J.K. (1994) Screening for Sulfolobales, their plasmids and their viruses, in icelandic solfataras. In Molecular Biology of Archaea. Pfeifer, F., Palm, P., and Schleifer, K.-H. (eds). Stuttgart: Gustav Fisher Verlag, pp. 109-128.
    • (1994) Molecular Biology of Archaea , pp. 109-128
    • Zillig, W.1    Kletzin, A.2    Schleper, C.3    Holz, I.4    Janekovic, D.5    Hain, J.6    Lanzendörfer, M.7    Kristjansson, J.K.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.