Newly discovered archaebacterial flap endonucleases show a structure- specific mechanism for DNA substrate binding and catalysis resembling human flap endonuclease-1

Journal of Biological Chemistry

Volumn 273, Issue 42, 1998, Pages 27154-27161

  Hosfield, David J ^b   Frank, Geoffrey ^a   Weng, Yehua ^a   Tainer, John A ^b   Shen, Binghui ^a  

^a CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; DEOXYRIBONUCLEASE I; DNA; ENDONUCLEASE; METAL ION;

AMINO ACID SEQUENCE; ARCHAEBACTERIUM; ARCHAEGLOBUS FULGIDUS; ARTICLE; CATALYSIS; CONTROLLED STUDY; ENZYME ANALYSIS; ENZYME SPECIFICITY; ENZYME STRUCTURE; METHANOCOCCUS JANNASCHII; MOLECULAR CLONING; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN DNA BINDING; PYROCOCCUS FURIOSUS;

ACIDS; AMINO ACID SEQUENCE; ARCHAEAL PROTEINS; ARCHAEOGLOBUS; BINDING SITES; CATALYTIC DOMAIN; CLONING, MOLECULAR; DNA REPLICATION; DNA-BINDING PROTEINS; ENDODEOXYRIBONUCLEASES; EURYARCHAEOTA; FLAP ENDONUCLEASES; HEAT; HUMANS; HYDROGEN-ION CONCENTRATION; KINETICS; METHANOCOCCUS; MOLECULAR SEQUENCE DATA; OLIGODEOXYRIBONUCLEOTIDES; PYROCOCCUS FURIOSUS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY;

ARCHAEA; ARCHAEGLOBUS; ARCHAEGLOBUS FULGIDUS; BACTERIA (MICROORGANISMS); EUKARYOTA; MAMMALIA; METHANOCALDOCOCCUS JANNASCHII; METHANOCOCCUS; PYROCOCCUS FURIOSUS; UNIDENTIFIED BACTERIOPHAGE;

EID: 0032538537     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.273.42.27154     Document Type: Article

References (54)

1. Lindahl, T., Gaily, J. A., and Edelman, G. M. (1969) Proc. Natl. Acad. Sci. U. S. A. 62, 597-603
2. Lyamichev, V., Brow, M. A. V., and Dahlberg, J. E. (1993) Science 260, 778-783
3. Doetsch, P. W. (1995) Trends Biochem. Sci. 20, 384-386
4. Szankasi, P., and Smith G. R. (1995) Science 267, 1166-1169
5. Waga, S., Bauer, G., and Stillman, R. (1994) J. Biol. Chem. 269, 10923-10934
6. Turchi, J. J., Huang, L., Murante, R. S., Kim, Y., and Bambara, R. A. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 9803-9807
7. Goulian, M., Richards, S. H., Heard, C. J., and Bigsby, B. M. (1990) J. Biol. Chem. 265, 18461-18471
8. Ishimi, Y., Claude, A., Bullock, P., and Hurwitz, J. (1988) J. Biol. Chem. 263, 19723-19733
9. Harrington J. J., and Lieber, M. R. (1994) EMBO J. 13, 1235-1246
10. Harrington J. J., and Lieber, M. R. (1994) Genes Dev. 8, 1344-1355
11. Nolan, J. P., Shen, B., Park, M. S., and Sklar, L. A. (1996) Biochemistry 35, 11668-11676
12. Zhu, F. X., Biswas, E. E., and Biswas, B. B. (1997) Biochemistry 36 5947-5954
13. Murante, R. S., Rust, L., and Bambara, R. A. (1995) J. Biol. Chem. 270, 30377-30383
14. Robins, P., Pappin, D. J. C., Wood, R. D., and Lindahl, T. (1994) J. Biol. Chem. 269, 28535-28538
15. Murante, R. S., Huang, L., Turchi, J. J., and Bambara, R. (1994) J. Biol. Chem. 269, 1191-1196
16. Lieber, M. R. (1997) Bioesays 19, 233-240
17. Klungland, A., and Lindahl, T. (1997) EMBO J. 16, 3341-3348
18. Kim, K., Biade, S., and Matsumoto, Y. (1998) J. Biol. Chem. 273, 8842-8848
19. Li, X., Li, J., Harrington, J., Lieber, M. R., and Burgers, P. M. J. (1995) J. Biol. Chem. 270, 22109-22112
20. Wu, X., Li, J., Li, X., Hsieh, C.-I., Burgers, P. M. J., and Lieber, M. R. (1996) Nucleic Acids Res. 24, 2036-2043
21. Warbrick, E., Lane, D. P., Glover, D. M., and Cox, L. S. (1997) Oncagene 14, 2313-2321
22. Chen, J., Chen, S., Saha, P., and Dutta, A. (1996) Proc. Natl. Acad. Sci. U. S. A. 93 11597-11602
23. Gary, R., Ludwig, D. L., Cornelius, H. L., MacInnes, M. A., and Park, M. S. (1997) J. Biol. Chem. 272, 24522-24529
24. Jacquier, A., Legrain, P., and Dujon, B. (1992) Yeast 8, 121-132
25. Murray, J. M., Tavassoli, M., Al-harithy, R., Sheldrick, K. S., Lehmann, A. R., Carr, A. M., and Watts, F. Z. (1994) Mol. Cell Biol. 14, 4878-4888
26. Reagan, M. S., Pittenger, C., Siede, W., and Friedberg, E. C. (1995) J. Bacteriol. 177, 364-371
27. Sommers, C. H., Miller, E. J., Dujon, B., Prakash, S., and Prakash, L. (1995) J. Biol. Chem. 270, 4193-4196
28. Johnson, R. E., Kovvali, G. K., Prakash, L., and Prakash, S. (1995) Science 269, 238-240
29. Tishkoff, D. X., Filosi, N., Gaida, G. M., and Kolodner, R. D. (1997) Cell 88, 253-263
30. Freudenreich, C. H., Kantrow, S. M., and Zakian, V. A. (1998) Science 279, 853-856
31. Schweitzer, J. K, and Livingston, D. M. (1998) Hum. Mol. Genet. 7, 69-74
32. Hollingsworth, H. C., and Nossal, N. G. (1991) J. Biol. Chem. 266, 1888-1897
33. Mueser, T. C., Nossal, N. G., and Hyde, C. C. (1996) Cell 85, 1101-1112
34. Ceska, T. A., Sayers, J. R., Stier, G., and Suck, D. (1996) Nature 382, 90-93
35. Cooper, P. K., Nouspikel, T., Clarkson, S. G., and Leadon, S. A. (1997) Science 275, 990-993
36. Xu, Y., Derbyshire, V., Ng, K., Sun, X. C., Grindley, N. D. F., and Joyce, C. M. (1997) J. Mol. Biol. 268, 284-302
37. Kornberg A., and Baker, T. A. (1992) DNA Replication, 2nd Ed., WH Freeman, New York
38. Shen, B., Nolan, J. P., Sklar, L. A., and Park, M. S. (1996) J. Biol. Chem. 271, 9173-9176
39. Shen, B., Nolan, J. P., Sklar, L. A., and Park, M. S. (1997) Nucleic Acids Res. 25, 3332-3338
40. Frank, G., Qiu, J., Somsouk, M., Weng, Y., Somsouk, L., Nolan, J. P., and Shen, B. (1998) J. Biol. Chem. 273, in press
41. Shen, B., Qiu, J., Hosfield, D., and Tainer, J. A. (1998) Trends Biochem. Sci. 23, 171-173
42. Harrington, J. J., and Lieber, M. R. (1995) J. Biol. Chem. 270, 4503-4508
43. Petruska, J., Goodman, M. F., Boosalis, M. S., Sowers, L. C., Cheong, C., and Tinoco, I. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 6252-6256
44. Klenk, H. P., et al. (1997) Nature 390, 364-370
45. Bult, C. J., et al. (1996) Science 273, 1058-1073
46. Borges K. M., Brummet, S. R., and Bogert, A. (1996) Genome Sci. Technol. 1, 37-46
47. Goldman, A. (1995) Structure 3, 1277-1279
48. Henning, M., Dairmont, B., Sterner, B., Kirschner, K., and Jansonius, J. N. (1995) Structure 3, 1295-1306
49. Friedberg, E. C. (1992) Trends Biochem. Sci. 17, 347
50. Knauf, J. A., Pendergrass, S. H., Marrone, B. L., Strniste, G. F., MacInnes, M. A., and Park, M. S. (1996) Mutat. Res. 363, 67-75
51. Park, M. S., Knauf, J. A., Pendergrass, S. H., Coulon, C. H., Strniste, G. F., Marrone, B. M., and MacInnes, M. A. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 8368-8373
52. Freemont, P. S., Friedman, J. M., Beese, L. S., Sanderson, M. R., and Steitz, T. A. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 8924-8928
53. Beese, L. S., and Steitz, T. A. (1991) EMBO J. 10, 25-33
54. Kim, Y., Eom, S. H., Wang, J., Lee, D.-S., Suh, S. W., and Steitz, T. A. (1995) Nature 376, 612-616