Structure and assembly of an augmented Sm-like archaeal protein 14-mer

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 8, 2003, Pages 4539-4544

  Mura, Cameron ^a   Phillips, Martin ^a   Kozhukhovsky, Anna ^a   Eisenberg, David ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL PROTEIN; CADMIUM; CHELATE; DIVALENT CATION; OLIGOMER; PROTEIN SUBUNIT; RIBONUCLEOPROTEIN; SM LIKE ARCHAEAL PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CARBOXY TERMINAL SEQUENCE; CRYSTAL STRUCTURE; MOLECULAR PHYLOGENY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN STRUCTURE; REGULATORY MECHANISM; RNA PROCESSING; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; ARCHAEAL PROTEINS; BINDING SITES; BIOPHYSICS; CADMIUM; ELECTROSTATICS; HUMANS; LIGANDS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; PROTEIN SUBUNITS; SEQUENCE HOMOLOGY, AMINO ACID; THERMOPROTEACEAE;

ARCHAEA; BACTERIA (MICROORGANISMS);

EID: 0344059121     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0538042100     Document Type: Article

References (38)

1. Yu, Y.-T., Scharl, E. C., Smith, C. M. & Steitz, J. A. (1999) in The RNA World, eds. Gesteland, R. F., Cech, T. R. & Atkins, J. F. (Cold Spring Harbor Lab. Press, Plainview, NY), pp. 487-524.
2. Collins, C. A. & Guthrie, C. (2000) Nat. Struct. Biol 7, 850-854.
3. Stevens, S. W., Ryan, D. E., Ge, H. Y., Moore, R. E., Young, M. K., Lee, T. D. & Abelson, J. (2002) Mol. Cell 9, 31-44.
4. Walke, S., Bragado-Nilsson, E., Seraphin, B. & Nagai, K. (2001) J. Mol. Biol. 308, 49-58.
5. Raker, V. A., Plessel, G. & Luhrmann, R. (1996) EMBO J. 15, 2256-2269.
6. Will, C. L. & Luhrmann, R. (2001) Curr. Opin. Cell Biol. 13, 290-301.
7. Achsel, T., Brahms, H., Kastner, B., Bachi, A., Wilm, M. & Luhrmann, R. (1999) EMBO J. 18, 5789-5802.
8. Collins, B. M., Harrop, S. J., Kornfeld, G. D., Dawes, I. W., Curmi, P. M. & Mabbutt, B.C. (2001) J. Mol. Biol. 309, 915-923.
9. Toro, I., Thore, S., Mayer, C., Basquin, J., Seraphin, B. & Suck, D. (2001) EMBO J. 20, 2293-2303.
10. Mura, C., Cascio, D., Sawaya, M. R. & Eisenberg, D. S. (2001) Proc. Natl. Acad. Sci. USA 98, 5532-5537.
11. Sun, X., Zhulin, I. & Wartell, R. M. (2002) Nucleic Acids Res. 30, 3662-3671.
12. Moller, T., Franch, T., Hojrup, P., Keene, D. R., Bachinger, H. P., Brennan, R. G. & Valentin-Hansen, P. (2002) Mol. Cell 9, 23-30.
13. Plessel, G., Luhrmann, R. & Kastner, B. (1997) J. Mol. Biol. 265, 87-94.
14. Stark, H., Dube, P., Luhrmann, R. & Kastner, B. (2001) Nature 409, 539-542.
15. Toro, I., Basquin, J., Teo-Dreher, H. & Suck, D. (2002) J. Mol. Biol. 320, 129-142.
16. Achsel, T., Stark, H. & Luhrmann, R. (2001) Proc. Natl. Acad. Sci. USA 98, 3685-3689.
17. Kambach, C., Walke, S., Young, R., Avis, J. M., de la Fortelle, E., Raker, V. A., Luhrmann, R., Li, J. & Nagai, K. (1999) Cell 96, 375-387.
18. Schumacher, M. A., Pearson, R. F., Moller, T., Valentin-Hansen, P. & Brennan, R. G. (2002) EMBO J. 21, 3546-3556.
19. Urlaub, H., Raker, V. A., Kostka, S. & Luhrmann, R. (2001) EMBO J. 20, 187-196.
20. Van Duyne, G. D., Standaert, R. F., Karplus, P. A., Schreiber, S. L. & Clardy, J. (1993) J. Mol. Biol. 229, 105-124.
21. Trakhanov, S., Kreimer, D. I., Parkin, S., Ames, G. F. & Rupp, B. (1998) Protein Sci. 7, 600-604.
22. Otwinowski, Z. & Minor, W. (1997) in Methods in Enzymology, eds. Sweet, R. & Carter, C. W., Jr. (Academic, San Diego), Vol. 276A, pp. 307-326.
23. Dodson, E. J., Winn, M. & Ralph, A. (1997) Methods Enzymol. 276, 620-633.
24. Cowtan, K. & Main, P. (1998) Acta Crystallogr. D Biol. Crystallogr. 54, 487-493.
25. Terwilliger, T. C. (2001) Acta Crystallogr. D Biol. Crystallogr. 57, 1755-1762.
26. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., et al. (1998) Acta Crystallogr. D Biol. Crystallogr. 54, 905-921.
27. Colovos, C. & Yeates, T. O. (1993) Protein Sci. 2, 1511-1519.
28. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402.
29. Higgins, D. G., Thompson, J. D. & Gibson, T. J. (1996) Methods Enzymol. 266, 383-402.
30. Shindyalov, I. N. & Bourne, P. E. (1998) Protein Eng. 11, 739-747.
31. Schneider, T. R. (2002) Acta Crystallogr. D Biol. Crystallogr. 58, 195-208.
32. Nicholls, A., Sharp, K. A. & Honig, B. (1991) Proteins 11, 281-296.
33. Mura, C., Kozhukhovsky, A., Gingery, M., Phillips, M. & Eisenberg, D. (2003) Protein Sci. 12, 832-847.
34. Antson, A. A., Dodson, E. J., Dodson, G., Greaves, R. B., Chen, X. & Gollnick, P. (1999) Nature 401, 235-242.
35. Arluison, V., Derreumaux, P., Allemand, F., Folichon, M., Hajnsdorf, E. & Regnier, P. (2002) J. Mol. Biol. 320, 705-712.
36. Holm, L. & Sander, C. (1993) J. Mol. Biol. 233, 123-138.
37. Kim, Y., Geiger, J. H., Hahn, S. & Sigler, P. B. (1993) Nature 365, 512-520.
38. Bass, R. B., Strop, P., Barclay, M. & Rees, D. C. (2002) Science 298, 1582-1587.