Technical development of proteomics

Chinese Science Bulletin

Volumn 44, Issue 16, 1999, Pages 1441-1447

  Wan, Jinghong ^a   He, Fuchu ^b  

^a CHONGQING MEDICAL UNIVERSITY   (China)

^b BEIJING INSTITUTE OF RADIATION MEDICINE   (China)

Author keywords

Database; Image analysis; Peptide mass fingerprinting; Proteome; Two dimensional electrophoresis

Indexed keywords

EID: 0343842633     PISSN: 10016538     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF03183559     Document Type: Review

References (36)

1. Wilkins, M., Government backs proteome proposal, Nature, 1995, 378(6538): 653.
2. Humphery-Smith, I., Cordwell, S. J., Blackstock, W. P., Proteome research: complementarity and limitations with respect to the RNA and DNA worlds, Electrophoresis, 1997, 18: 1217.
3. Wilkins, M. R., Sanchez, J. C., Williams, K. L. et al., Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it, Biotechnology and Genetic Engineering Reviews, 1995, 13: 19.
4. Mullner, S., Neumann, T., Lottspeich, F., Proteomics - a new way for drug target discovery, Arzneim. - Forsch. / Drug Res., 1998, 48(1): 93.
5. Anderson, N. L., Anderson, N. G., Proteome and proteomics: new technologies, new concepts, and new words, Electrophoresis, 1998, 19: 1853.
6. O'Farrell, P. H., High resolution two-dimensional electrophoresis of proteins, The Journal of Biological Chemistry, 1975, 250 (10): 4007.
7. Klose, J., Kobalz, U., Two-dimensional electrophoresis of proteins: an updated protocol and implications for a functional analysis of the genome, Electrophoresis, 1995, 16: 1034.
8. Chevallet, M., Santoni, V., Rabilloud, T. et al., New zwitterionic detergents improve the analysis of membrane proteins by two-dimensional electrophoresis, Electrophoresis, 1998, 19: 1901.
9. Rabilloud, T., Use of thiourea to increase the solubility of membrane proteins in two-dimensional electrophoresis, Electrophoresis, 1998, 19: 758.
10. Rabilloud, T., Adessi, C., Lunardi, J. et al., Improvement of the solubilization of proteins in two-dimensional electrophoresis with immobilised pH gradients, Electrophoresis, 1997, 18: 307.
11. Rabilloud, T., Hubert, M., Tarroux, P., Procedures for two-dimensional electrophoretic analysis of nuclear proteins, Journal of Chromatograpgy, 1986, 351: 77.
12. Görg, A., Postel, W., Gunther, S., The current state of two-dimensional electrophoresis with immobilized pH gradient, Electrophoresis, 1988, 9: 531.
13. Urquhart, B. L., Atsalos, T. E., Humphery-Smith, I. et al., "Proteomic contigs" of Mycobacterium tuberculosis and mycobacterium bovis (BCG) using novel immobilised pH gradients, Electrophoresis, 1997, 18: 1384.
14. Rabilloud, T., Valette, C., Lawrence, J. J., Sample application by in-gel rehydration improves the resolution of two-dimensional electrophoresis with immobilized pH gradients in the first dimension, Electrophoresis, 1994, 15: 1552.
15. Castellanos-Serra, L. R., Fernandez-Patron, C., Huerta, V. et al., A procedure for protein elution from reverse-stained polyacrylamide gels applicable at the low picolmole level: an alternative route to the preparation of low abundance proteins for microanalysis, Electrophoresis, 1996, 17: 156.
16. Bjellqvist, B., Sanchez, J. C., Hochstrasser, D. F. et al., Micropreparative two-dimensional electrophoresis allowing the separation of samples containing milligram amounts of proteins, Electrophoresis, 1993, 14: 1375.
17. Wirth, P. J., Hoang, T. N., Benjamin, T., Micropreparative immobilized pH gradient two-dimensional electrophoresis in combination with protein microsequencing for the analysis of human liver proteins, Electrophoiresis, 1995, 16: 1946.
18. Wilkins, M. R., Williams, K. L., Hohstrasser, D. F. et al., Proteome Research: New Frontiers in Functional Genomics, New York: Springer, 1997.
19. Görg, A., Obermaier, C., Madjar, J. J., Very alkaline immobilized pH gradients for two-dimensional electrophoresis of ribosomal and nuclear proteins, Electrophoresis , 1997, 18: 328.
20. O'Farrell, P. Z., Goodman, H. M., O'Farrell, P. H., High resolution two-dimensional electrophoresis of basic as well as acidic proteins, Cell, 1977, 12: 1133.
21. Bjellqvist, B., Righetti, P. G., Görg, A. J., Isoelectric focusing in immobilised pH gradients: principle, methodology and some applications, Biochem. Biophys Methods, 1982, 6: 317.
22. Ünlü, M., Morgan, M. E., Minden, J. S., Difference gel electrophoresis: a single gel method for detecting changes in protein extracts, Electrophoresis, 1997, 18: 2071.
23. Gooley, A. A., Ou, K., Williams, K. L. et al., A role for Edman degradation in proteome studies, Electrophoresis, 1997, 18: 1068.
24. Roepstorff, P., Mass spectrometry in protein studies from genome to function, Analytical Biotechnology, 1997, 8(1) : 6.
25. Haynes, P. A., Gygi, S. P., Aebersold, R. et al., Proteome analysis: biological assay or data archive? Electrophoresis, 1998, 19: 1862.
26. Figeys, D., Aebersold, R., High sensitivity identification of proteins by electrospray ionization tandem mass spectrometry: inirial comparison between an ion trap mass spectrometer and a triple quadrupole mass spectrometer, Electrophoresis, 1997, 18: 360.
27. Henzel, W. J., Billeci, T. M., Watanae, C. et al., Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence database, Proc. Natl. Acad. Sci. USA., 1993, 90: 5011.
28. Chait, B. T., Wang, R., Kent, S. B. H. et al., Protein ladder sequencing, Science, 1993, 262: 89.
29. Yates, J. R., Mass spectrometry and the age of the proteome, Journal of Mass Spectrometry, 1998, 33: 1.
30. Jungblut, P. Thiede, B., Protein identification from 2-DE gels by MALDI mass spectrometry, Mass Spectrometry Reviews, 1997, 16: 45.
31. Gaskell, S. J. , Electrospray: principles and practice, Journal of Mass Spectrometry, 1997, 32: 677.
32. Shevchenko, A., Jensen, O. N. , Mann, M. et al., Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two-dimensional gels, Proc. Natl. Acad. Sci. USA, 1996, 93: 14440.
33. Latter, G. I., Burbeck, S., Leavitt, J. et al., Identification of polypeptides on two-dimensional electrophoresis gels by amino acid comparison, Clin. Chem., 1984, 30: 1925.
34. Sanchez, J. C., Appel, R. D., Hochstrasser, D. F., Inside SWISS-2DPAGE database, Electrophoresis, 1995, 16: 1131.
35. Tonella, L., Walsh, B. J., Hochstrasser, D. F. et al., '98 Escherichia coli SWISS-2DPAGE database update, Electrophoresis, 1998, 19: 1960.
36. Traini, M., Gooley, A. A., Williams, K. L. et al., Towards an automated approach for protein identification in proteome projects, Electrophoresis, 1998, 19: 1941.