메뉴 건너뛰기




Volumn 10, Issue 3-4, 2003, Pages 399-417

Provably Sensitive Indexing Strategies for Biosequence Similarity Search

Author keywords

Alignment; Biosequence comparison; Metric embedding; Score matrices

Indexed keywords

BACTERIAL PROTEIN; DNA; PROTEIN; T LYMPHOCYTE RECEPTOR;

EID: 0242606474     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/10665270360688093     Document Type: Conference Paper
Times cited : (6)

References (39)
  • 1
    • 0029889221 scopus 로고    scopus 로고
    • Local alignment statistics
    • Altschul, S.F., and Gish, W. 1996. Local alignment statistics. Methods Enzymol. 266, 460-480.
    • (1996) Methods Enzymol. , vol.266 , pp. 460-480
    • Altschul, S.F.1    Gish, W.2
  • 5
    • 0041762732 scopus 로고    scopus 로고
    • Complexity of minimum biclique cover and decomposition for bipartite domino-free graphs
    • Amilhastre, J., Vilarem, M.C., and Janssen, P. 1998. Complexity of minimum biclique cover and decomposition for bipartite domino-free graphs. Discr. Appl. Math. 86, 125-144.
    • (1998) Discr. Appl. Math. , vol.86 , pp. 125-144
    • Amilhastre, J.1    Vilarem, M.C.2    Janssen, P.3
  • 9
    • 51249178997 scopus 로고
    • On Lipschitz embedding of finite metric spaces in Hilbert space
    • Bourgain, J. 1985. On Lipschitz embedding of finite metric spaces in Hilbert space. Israeli J. Math. 52, 46-52.
    • (1985) Israeli J. Math. , vol.52 , pp. 46-52
    • Bourgain, J.1
  • 10
    • 0035024494 scopus 로고    scopus 로고
    • Efficient large-scale sequence comparison by locality-sensitive hashing
    • Buhler, J. 2001a. Efficient large-scale sequence comparison by locality-sensitive hashing. Bioinformatics 17, 419-428.
    • (2001) Bioinformatics , vol.17 , pp. 419-428
    • Buhler, J.1
  • 14
    • 0028516811 scopus 로고
    • Sublinear expected time approximate string matching and biological applications
    • Chang, W.I., and Lawler, E.L. 1994. Sublinear expected time approximate string matching and biological applications. Algorithmica 12, 327-344.
    • (1994) Algorithmica , vol.12 , pp. 327-344
    • Chang, W.I.1    Lawler, E.L.2
  • 19
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff, S., and Henikoff, J.G. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. USA 89, 10915-10919.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 20
    • 0000947357 scopus 로고    scopus 로고
    • Approximating clique and biclique problems
    • Hochbaum, D.S. 1998. Approximating clique and biclique problems. J. Algorithms 29, 174-200.
    • (1998) J. Algorithms , vol.29 , pp. 174-200
    • Hochbaum, D.S.1
  • 23
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent, W.J. 2002. BLAT - the BLAST-like alignment tool. Genome Res. 12, 656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 25
    • 0036202921 scopus 로고    scopus 로고
    • PatternHunter: Faster and more sensitive homology search
    • Ma, B., Tromp, J., and Li, M. 2002. PatternHunter: Faster and more sensitive homology search. Bioinformatics 18, 440-445.
    • (2002) Bioinformatics , vol.18 , pp. 440-445
    • Ma, B.1    Tromp, J.2    Li, M.3
  • 26
    • 0242568129 scopus 로고    scopus 로고
    • National Center for Biotechnology Information 2002. Statistics on growth of GenBank. www.ncbi.nih.gov/Genbank/ genbankstats.html.
    • (2002) Statistics on Growth of GenBank
  • 27
    • 0023989064 scopus 로고
    • Improved tools for biological sequence analysis
    • Pearson, W.R., and Lipman, D.J. 1988. Improved tools for biological sequence analysis. Proc. Natl. Acad. Sci. USA 85, 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 28
    • 0029185211 scopus 로고
    • Multiple filtration and approximate pattern matching
    • Pevzner, P., and Waterman, M.S. 1995. Multiple filtration and approximate pattern matching. Algorithmica 13, 135-154.
    • (1995) Algorithmica , vol.13 , pp. 135-154
    • Pevzner, P.1    Waterman, M.S.2
  • 31
    • 0025141443 scopus 로고
    • Automatic generation of primary sequence patterns from sets of related protein sequences
    • Smith, R.F., and Smith, T.F. 1990. Automatic generation of primary sequence patterns from sets of related protein sequences. Proc. Natl. Acad. Sci. USA 87, 118-122.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 118-122
    • Smith, R.F.1    Smith, T.F.2
  • 32
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T.F., and Waterman, M.S. 1981. Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 33
    • 0002164370 scopus 로고
    • Improved sensitivity of nucleic acid database searches using application-specific scoring matrices
    • States, D.J., Gish, W., and Altschul, S.F. 1991. Improved sensitivity of nucleic acid database searches using application-specific scoring matrices. Methods: A Companion to Methods in Enzymology 3, 66-70.
    • (1991) Methods: A Companion to Methods in Enzymology , vol.3 , pp. 66-70
    • States, D.J.1    Gish, W.2    Altschul, S.F.3
  • 35
    • 0022591495 scopus 로고
    • The classification of amino acid conservation
    • Taylor, W.R. 1986. The classification of amino acid conservation. J. Theor. Biol. 119, 205-218.
    • (1986) J. Theor. Biol. , vol.119 , pp. 205-218
    • Taylor, W.R.1
  • 36
    • 0023818570 scopus 로고
    • Structure, organization, and polymorphism of murine and human T-cell receptor α and β chain gene families
    • Wilson, R.K., Lai, E., Concannon, P., Barth, R.K., and Hood, L.E. 1988. Structure, organization, and polymorphism of murine and human T-cell receptor α and β chain gene families. Immunological Rev. 101, 149-172.
    • (1988) Immunological Rev. , vol.101 , pp. 149-172
    • Wilson, R.K.1    Lai, E.2    Concannon, P.3    Barth, R.K.4    Hood, L.E.5
  • 37
  • 38
    • 0001514262 scopus 로고
    • Statistics of local complexity in amino acid sequences and sequence databases
    • Wooton, J.C., and Federhen, S. 1993. Statistics of local complexity in amino acid sequences and sequence databases. Comput. Chem. 17, 149-163.
    • (1993) Comput. Chem. , vol.17 , pp. 149-163
    • Wooton, J.C.1    Federhen, S.2
  • 39


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.