메뉴 건너뛰기




Volumn 17, Issue 5, 2001, Pages 419-428

Efficient large-scale sequence comparison by locality-sensitive hashing

Author keywords

[No Author keywords available]

Indexed keywords

DNA; NUCLEIC ACID BASE;

EID: 0035024494     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/17.5.419     Document Type: Article
Times cited : (203)

References (23)
  • 2
    • 0033861549 scopus 로고    scopus 로고
    • Human and mouse gene structure: Comparative analysis and application to exon prediction
    • Batzoglou, S., Pachter, L., Mesirov, J.P., Berger, B. and Lander, E.S. (2000) Human and mouse gene structure: comparative analysis and application to exon prediction. Genome Res., 10, 950-958.
    • (2000) Genome Res. , vol.10 , pp. 950-958
    • Batzoglou, S.1    Pachter, L.2    Mesirov, J.P.3    Berger, B.4    Lander, E.S.5
  • 3
    • 0030895401 scopus 로고    scopus 로고
    • Analysis of the 1.1-Mb human alpha/delta T-cell receptor locus with bacterial artificial chromsome clones
    • Boysen, C., Simon, M. and Hood, L. (1997) Analysis of the 1.1-Mb human alpha/delta T-cell receptor locus with bacterial artificial chromsome clones. Genome Res., 7, 330-338.
    • (1997) Genome Res. , vol.7 , pp. 330-338
    • Boysen, C.1    Simon, M.2    Hood, L.3
  • 6
    • 79960655760 scopus 로고    scopus 로고
    • The DNA sequence of human chromosome 22
    • Dunham, I., Shimuzu, N., Roe, B.A., Chissoe, S. et al. (1999) The DNA sequence of human chromosome 22. Nature, 402, 489-495.
    • (1999) Nature , vol.402 , pp. 489-495
    • Dunham, I.1    Shimuzu, N.2    Roe, B.A.3    Chissoe, S.4
  • 7
    • 0026888975 scopus 로고
    • Sparse dynamic programming I: Linear cost functions
    • Eppstein, D., Galil, Z., Giancarlo, R. and Italiano, G.F. (1992) Sparse dynamic programming I: linear cost functions. J. ACM, 39, 519-545.
    • (1992) J. ACM , vol.39 , pp. 519-545
    • Eppstein, D.1    Galil, Z.2    Giancarlo, R.3    Italiano, G.F.4
  • 8
    • 0031861637 scopus 로고    scopus 로고
    • Locus control regions, chromatin activation, and transcription
    • Fraser, P. and Grosveld, F. (1998) Locus control regions, chromatin activation, and transcription. Curr. Opin. Cell Biol., 10, 361-365.
    • (1998) Curr. Opin. Cell Biol. , vol.10 , pp. 361-365
    • Fraser, P.1    Grosveld, F.2
  • 10
    • 0342768576 scopus 로고
    • Green, P. (1994) Crossmatch. At http://bozeman.mbt.washington. edu/phrap.docs/swat.html.
    • (1994) Crossmatch
    • Green, P.1
  • 12
    • 0030722935 scopus 로고    scopus 로고
    • Long human-mouse sequence alignments reveal novel regulatory elements: A reason to sequence the mouse genome
    • Hardison, R.C., Oeltjen, J. and Miller, W. (1997) Long human-mouse sequence alignments reveal novel regulatory elements: a reason to sequence the mouse genome. Genome Res., 7, 959-966.
    • (1997) Genome Res. , vol.7 , pp. 959-966
    • Hardison, R.C.1    Oeltjen, J.2    Miller, W.3
  • 13
    • 0034682403 scopus 로고    scopus 로고
    • The DNA sequence of human chromosome 21
    • Hattori, M., Fujiyama, A., Taylor, T.D., Watanabe, H. et al. (2000) The DNA sequence of human chromosome 21. Nature, 405, 311-319.
    • (2000) Nature , vol.405 , pp. 311-319
    • Hattori, M.1    Fujiyama, A.2    Taylor, T.D.3    Watanabe, H.4
  • 14
    • 44949272730 scopus 로고
    • A time-efficient, linear-space local similarity algorithm
    • Huang, X. and Miller, W. (1991) A time-efficient, linear-space local similarity algorithm. Adv. Appl. Math., 12, 337-357.
    • (1991) Adv. Appl. Math. , vol.12 , pp. 337-357
    • Huang, X.1    Miller, W.2
  • 15
    • 0031644241 scopus 로고    scopus 로고
    • Approximate nearest neighbors: Towards removing the curse of dimensionality
    • Association for Computing Machinery, Dallas, TX
    • Indyk, P. and Motwani, R. (1998) Approximate nearest neighbors: towards removing the curse of dimensionality. In Proceedings of the 1998 Symposium on Theory of Computing. Association for Computing Machinery, Dallas, TX.
    • (1998) Proceedings of the 1998 Symposium on Theory of Computing
    • Indyk, P.1    Motwani, R.2
  • 16
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S. and Altschul, S.F. (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl Acad. Sci. USA, 87, 2264-2268.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 17
    • 0034616398 scopus 로고    scopus 로고
    • Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
    • Loots, G.G., Locksley, R.M., Blankespoor, C.M., Wang, Z.E., Miller, W., Rubin, E.M. and Frazer, K.A. (2000) Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science, 288, 136-140.
    • (2000) Science , vol.288 , pp. 136-140
    • Loots, G.G.1    Locksley, R.M.2    Blankespoor, C.M.3    Wang, Z.E.4    Miller, W.5    Rubin, E.M.6    Frazer, K.A.7
  • 19
    • 0029185211 scopus 로고
    • Multiple filtration and approximate pattern matching
    • Pevzner, P. and Waterman, M.S. (1995) Multiple filtration and approximate pattern matching. Algorithmica, 13, 135-154.
    • (1995) Algorithmica , vol.13 , pp. 135-154
    • Pevzner, P.1    Waterman, M.S.2
  • 21
    • 0004239562 scopus 로고    scopus 로고
    • Smit, A. and Green, P. (1999) Repeatmasker. At http://ftp.genome. washington.edu/RM/RepeatMasker.html.
    • (1999) Repeatmasker
    • Smit, A.1    Green, P.2
  • 22
    • 0002164370 scopus 로고
    • Improved sensitivity of nucleic acid database searches using application-specific scoring matrices
    • States, D.J., Gish, W. and Altschul, S.F. (1991) Improved sensitivity of nucleic acid database searches using application-specific scoring matrices. Methods: A Companion to Meth. Enzymol., 3, 66-70.
    • (1991) Methods: A Companion to Meth. Enzymol. , vol.3 , pp. 66-70
    • States, D.J.1    Gish, W.2    Altschul, S.F.3
  • 23
    • 0023818570 scopus 로고
    • Structure, organization, and polymorphism of murine and human T-cell receptor α and β chain gene families
    • Wilson, R.K., Lai, E., Concannon, P., Barth, R.K. and Hood, L.E. (1988) Structure, organization, and polymorphism of murine and human T-cell receptor α and β chain gene families. Immunol. Rev., 101, 149-172.
    • (1988) Immunol. Rev. , vol.101 , pp. 149-172
    • Wilson, R.K.1    Lai, E.2    Concannon, P.3    Barth, R.K.4    Hood, L.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.