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Volumn 46, Issue 2, 2003, Pages 139-146

Effect of long-term herbicide applications on the bacterial community structure and function in an agricultural soil

Author keywords

Group specific DGGE; Herbicide; Long term effect; Methanotroph; Real time PCR; Richness

Indexed keywords

AMMONIUM DERIVATIVE; ATRAZINE; BACTERIAL RNA; HERBICIDE; METHANE; METOLACHLOR;

EID: 0242317248     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(03)00205-8     Document Type: Article
Times cited : (114)

References (35)
  • 1
    • 0031902077 scopus 로고    scopus 로고
    • Monitoring impact of a pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures
    • Engelen B., Meinken K., von Wintzintgerode F., Heuer H., Malkomes H.P., Backhaus H. Monitoring impact of a pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures. Appl. Environ. Microbiol. 64:1998;2814-2821.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2814-2821
    • Engelen, B.1    Meinken, K.2    Von Wintzintgerode, F.3    Heuer, H.4    Malkomes, H.P.5    Backhaus, H.6
  • 2
    • 0031474907 scopus 로고    scopus 로고
    • Biodiversity and ecosystem functioning in soil
    • Brussaard L., et al. Biodiversity and ecosystem functioning in soil. Ambio. 26:1997;563-570.
    • (1997) Ambio , vol.26 , pp. 563-570
    • Brussaard, L.1
  • 3
    • 0034952766 scopus 로고    scopus 로고
    • Methane oxidation in non-flooded soils as affected by crop production - Invited paper
    • Hütsch B.W. Methane oxidation in non-flooded soils as affected by crop production - invited paper. Eur. J. Agron. 14:2001;237-260.
    • (2001) Eur. J. Agron. , vol.14 , pp. 237-260
    • Hütsch, B.W.1
  • 4
    • 0023500509 scopus 로고
    • Effects of long-term 2,4-D field applications on soil biochemical processes
    • Biederbeck V.O., Campbell C.A., Smith A.E. Effects of long-term 2,4-D field applications on soil biochemical processes. J. Environ. Qual. 16:1987;257-262.
    • (1987) J. Environ. Qual. , vol.16 , pp. 257-262
    • Biederbeck, V.O.1    Campbell, C.A.2    Smith, A.E.3
  • 6
    • 0033858708 scopus 로고    scopus 로고
    • Methods for assessing the composition and diversity of soil microbial communities
    • Hill G.T., et al. Methods for assessing the composition and diversity of soil microbial communities. Appl. Soil Ecol. 15:2000;25-36.
    • (2000) Appl. Soil Ecol. , vol.15 , pp. 25-36
    • Hill, G.T.1
  • 7
    • 0033015223 scopus 로고    scopus 로고
    • Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
    • Bruns M.A., Stephen J.R., Kowalchuk G.A., Prosser J.I., Paul E.A. Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl. Environ. Microbiol. 65:1999;2994-3000.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 2994-3000
    • Bruns, M.A.1    Stephen, J.R.2    Kowalchuk, G.A.3    Prosser, J.I.4    Paul, E.A.5
  • 8
    • 0033827361 scopus 로고    scopus 로고
    • Response of a soil bacterial community to grassland succession as monitored by 16S rRNA levels of the predominant ribotypes
    • Felske A., Wolterink A., Van Lis R., De Vos W.M., Akkermans A.D.L. Response of a soil bacterial community to grassland succession as monitored by 16S rRNA levels of the predominant ribotypes. Appl. Environ. Microbiol. 66:2000;3998-4003.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3998-4003
    • Felske, A.1    Wolterink, A.2    Van Lis, R.3    De Vos, W.M.4    Akkermans, A.D.L.5
  • 9
    • 0032975666 scopus 로고    scopus 로고
    • Molecular analysis of ammonia-oxidizing bacteria of the beta subdivision of the class proteobacteria in compost and composted materials
    • Kowalchuk G.A., Naoumenko Z.S., Derikx P.J.L., Felske A., Stephen J.R., Arkhipchenko I.A. Molecular analysis of ammonia-oxidizing bacteria of the beta subdivision of the class proteobacteria in compost and composted materials. Appl. Environ. Microbiol. 65:1999;396-403.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 396-403
    • Kowalchuk, G.A.1    Naoumenko, Z.S.2    Derikx, P.J.L.3    Felske, A.4    Stephen, J.R.5    Arkhipchenko, I.A.6
  • 10
    • 0033928875 scopus 로고    scopus 로고
    • Application of polymerase chain reaction-denaturing gradient gel electrophoresis for comparison of direct and indirect extraction methods of soil DNA used for microbial community fingerprinting
    • Kozdroj J., van Elsas J.D. Application of polymerase chain reaction-denaturing gradient gel electrophoresis for comparison of direct and indirect extraction methods of soil DNA used for microbial community fingerprinting. Biol. Fertil. Soils. 31:2000;372-378.
    • (2000) Biol. Fertil. Soils , vol.31 , pp. 372-378
    • Kozdroj, J.1    Van Elsas, J.D.2
  • 11
    • 0032916067 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
    • McCaig A.E., Glover L.A., Prosser J.I. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl. Environ. Microbiol. 65:1999;1721-1730.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1721-1730
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 13
    • 0031904158 scopus 로고    scopus 로고
    • Analysis of beta-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
    • Stephen J.R., Kowalchuk G.A., Bruns M.A.V., McCaig A.E., Phillips C.J., Embley T.M., Prosser J.I. Analysis of beta-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Appl. Environ. Microbiol. 64:1998;2958-2965.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2958-2965
    • Stephen, J.R.1    Kowalchuk, G.A.2    Bruns, M.A.V.3    McCaig, A.E.4    Phillips, C.J.5    Embley, T.M.6    Prosser, J.I.7
  • 15
    • 0030739128 scopus 로고    scopus 로고
    • Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
    • Heuer H., Krsek M., Baker P., Smalla K., Wellington E.M.H. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63:1997;3233-3241.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3233-3241
    • Heuer, H.1    Krsek, M.2    Baker, P.3    Smalla, K.4    Wellington, E.M.H.5
  • 16
    • 0024822090 scopus 로고
    • Autotrophic nitrification in bacteria
    • Prosser J.I. Autotrophic nitrification in bacteria. Adv. Microb. Physiol. 30:1989;125-181.
    • (1989) Adv. Microb. Physiol. , vol.30 , pp. 125-181
    • Prosser, J.I.1
  • 17
    • 0025020587 scopus 로고
    • 16S ribosomal-RNA sequence-analysis for determination of phylogenetic relationship among methylotrophs
    • Tsuji K., Tsien H.C., Hanson R.S., Depalma S.R., Scholtz R., Laroche S. 16S ribosomal-RNA sequence-analysis for determination of phylogenetic relationship among methylotrophs. J. Gen. Microbiol. 136:1990;1-10.
    • (1990) J. Gen. Microbiol. , vol.136 , pp. 1-10
    • Tsuji, K.1    Tsien, H.C.2    Hanson, R.S.3    Depalma, S.R.4    Scholtz, R.5    Laroche, S.6
  • 18
    • 0032963409 scopus 로고    scopus 로고
    • Wide distribution and diversity of members of the bacterial kingdom acidobacterium in the environment
    • Barns S.M., Takala S.L., Kuske C.R. Wide distribution and diversity of members of the bacterial kingdom acidobacterium in the environment. Appl. Environ. Microbiol. 65:1999;1731-1737.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1731-1737
    • Barns, S.M.1    Takala, S.L.2    Kuske, C.R.3
  • 19
    • 0035344248 scopus 로고    scopus 로고
    • Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
    • Smit E., Leeflang P., Gommans S., van den Broek J., van Mil S., Wernars K. Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods. Appl. Environ. Microbiol. 67:2001;2284-2291.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2284-2291
    • Smit, E.1    Leeflang, P.2    Gommans, S.3    Van Den Broek, J.4    Van Mil, S.5    Wernars, K.6
  • 20
    • 0033025914 scopus 로고    scopus 로고
    • Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles
    • El Fantroussi S., Verschuere L., Verstraete W., Top E.M. Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles. Appl. Environ. Microbiol. 65:1999;982-988.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 982-988
    • El Fantroussi, S.1    Verschuere, L.2    Verstraete, W.3    Top, E.M.4
  • 21
    • 0030826395 scopus 로고    scopus 로고
    • Introduction and PCR detection of Desulfomonile tiedjei in soil slurry microcosms
    • El Fantroussi S., Mahillon J., Naveau H., Agathos S.N. Introduction and PCR detection of Desulfomonile tiedjei in soil slurry microcosms. Biodegradation. 8:1997;125-133.
    • (1997) Biodegradation , vol.8 , pp. 125-133
    • El Fantroussi, S.1    Mahillon, J.2    Naveau, H.3    Agathos, S.N.4
  • 22
    • 0036202170 scopus 로고    scopus 로고
    • Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants
    • Boon N., De Windt W., Verstraete W., Top E.M. Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. FEMS Microbiol. Ecol. 39:2002;101-112.
    • (2002) FEMS Microbiol. Ecol. , vol.39 , pp. 101-112
    • Boon, N.1    De Windt, W.2    Verstraete, W.3    Top, E.M.4
  • 23
    • 0024996412 scopus 로고
    • Use of oligodeoxynucleotide signature probes for identification of physiological groups of methylotrophic bacteria
    • Tsien H.C., Bratina B.J., Tsuji K., Hanson R.S. Use of oligodeoxynucleotide signature probes for identification of physiological groups of methylotrophic bacteria. Appl. Environ. Microbiol. 56:1990;2858-2865.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 2858-2865
    • Tsien, H.C.1    Bratina, B.J.2    Tsuji, K.3    Hanson, R.S.4
  • 24
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations using denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., de Waal E.C., Uitterlinden A. Profiling of complex microbial populations using denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:1993;695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.3
  • 25
    • 84944178665 scopus 로고
    • Hierarchial grouping to optimize an objective function
    • Ward J.H. Hierarchial grouping to optimize an objective function. J. Am. Stat. Assoc. 58:1963;236-244.
    • (1963) J. Am. Stat. Assoc. , vol.58 , pp. 236-244
    • Ward, J.H.1
  • 28
    • 0035705142 scopus 로고    scopus 로고
    • Impact of herbicides on the abundance and structure of indigenous beta-subgroup ammonia-oxidizer communities in soil microcosms
    • Chang Y.J., Hussain A., Stephen J.R., Mullen M.D., White D.C., Peacock A. Impact of herbicides on the abundance and structure of indigenous beta-subgroup ammonia-oxidizer communities in soil microcosms. Environ. Toxicol. Chem. 20:2001;2462-2468.
    • (2001) Environ. Toxicol. Chem. , vol.20 , pp. 2462-2468
    • Chang, Y.J.1    Hussain, A.2    Stephen, J.R.3    Mullen, M.D.4    White, D.C.5    Peacock, A.6
  • 29
    • 0035157833 scopus 로고    scopus 로고
    • Assessment of chitin decomposer diversity within an upland grassland
    • Krsek M., Wellington E.M.H. Assessment of chitin decomposer diversity within an upland grassland. Antonie Van Leeuwenhoek. 79:2001;261-267.
    • (2001) Antonie Van Leeuwenhoek , vol.79 , pp. 261-267
    • Krsek, M.1    Wellington, E.M.H.2
  • 30
    • 0031857045 scopus 로고    scopus 로고
    • The influence of land use and pesticides on methane oxidation in some Belgian soils
    • Boeckx P., Van Cleemput O., Meyer T. The influence of land use and pesticides on methane oxidation in some Belgian soils. Biol. Fertil. Soils. 27:1998;293-298.
    • (1998) Biol. Fertil. Soils , vol.27 , pp. 293-298
    • Boeckx, P.1    Van Cleemput, O.2    Meyer, T.3
  • 33
    • 0038221311 scopus 로고    scopus 로고
    • Quantitative detection of methanotrophs in soil by novel pMMO-targeted real-time PCR assays
    • Kolb S., Knief C., Stubner S., Conrad R. Quantitative detection of methanotrophs in soil by novel pMMO-targeted real-time PCR assays. Appl. Environ. Microbiol. 69:2003;2423-2429.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 2423-2429
    • Kolb, S.1    Knief, C.2    Stubner, S.3    Conrad, R.4
  • 34
    • 0037337331 scopus 로고    scopus 로고
    • Bioaugmentation as a tool to protect the structure and function of an activated-sludge microbial community against a 3-chloroaniline shock load
    • Boon N., Top E.M., Verstraete W., Siciliano S.D. Bioaugmentation as a tool to protect the structure and function of an activated-sludge microbial community against a 3-chloroaniline shock load. Appl. Environ. Microbiol. 69:2003;1511-1520.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1511-1520
    • Boon, N.1    Top, E.M.2    Verstraete, W.3    Siciliano, S.D.4
  • 35
    • 0035031810 scopus 로고    scopus 로고
    • Five pesticides decreased oxidation of atmospheric methane in a forest soil
    • Priemé A., Ekelund F. Five pesticides decreased oxidation of atmospheric methane in a forest soil. Soil Biol. Biochem. 33:2001;831-835.
    • (2001) Soil Biol. Biochem. , vol.33 , pp. 831-835
    • Priemé, A.1    Ekelund, F.2


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