Activity and community structure of methane-oxidising bacteria in a wet meadow soil

FEMS Microbiology Ecology

Volumn 41, Issue 3, 2002, Pages 247-257

  Horz, Hans Peter ^a   Raghubanshi, Akhilesh S ^b   Heyer, Jürgen ^a   Kammann, Claudia ^c   Conrad, Ralf ^a   Dunfield, Peter F ^a  

^a MAX PLANCK INSTITUTE FOR TERRESTRIAL MICROBIOLOGY   (Germany)

^b BANARAS HINDU UNIVERSITY   (India)

^c JUSTUS LIEBIG UNIVERSITY   (Germany)

Author keywords

Methane; Methane oxidising bacterium; Methylocapsa; Methylocystis; Methylomicrobium; Microbial community analysis; pmoA

Indexed keywords

BACTERIAL DNA; METHANE;

BACTERIUM; COMMUNITY STRUCTURE; DNA FINGERPRINTING; MICROBIAL COMMUNITY; SOIL MICROORGANISM;

ANAEROBIC METABOLISM; ARTICLE; BACTERIAL COUNT; BACTERIAL FLORA; BACTERIAL GENE; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM; BACTERIUM CULTURE; BACTERIUM DETECTION; BACTERIUM ISOLATION; BIOGEOCHEMICAL CYCLING; CELL DENSITY; COMMUNITY STRUCTURE; CONTROLLED STUDY; DNA EXTRACTION; DNA FINGERPRINTING; GENE SEQUENCE; GERMANY; KINETICS; METHYLOCAPSA; METHYLOCYSTIS; METHYLOMICROBIUM; MICROBIAL ACTIVITY; MICROBIAL DIVERSITY; MOST PROBABLE NUMBER; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOIL; SOIL ANALYSIS; SOIL MICROFLORA; WETLAND;

GERMANY;

BACTERIA (MICROORGANISMS); METHYLOCAPSA; METHYLOCYSTIS; METHYLOMICROBIUM;

EID: 0036053321     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(02)00300-8     Document Type: Article

References (49)

1. Methane production and methane consumption: A review of processes underlying wetland methane fluxes
2. 2O, and NO)
3. A new method to study methane oxidation and methane production in soils
4. Atmospheric methane consumption in adjacent arable and forest soil ecosystems
5. 2O emissions from differently managed grasslands
6. Methane and carbon dioxide dynamics in a northern hardwood ecosystem
7. 2O fluxes in a humisol: Measurements in the field and intact soil cores
8. Effects of grassland management on the emission of methane from intensively managed grasslands on peat soil
9. Methane emission from Canadian prairie and forest soils under short term flooding conditions
10. The methanotrophs - The families Methylococcaceae and Methylocystaceae
11. Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs
12. A novel pmoA lineage represented by the acidophilic methanotrophic bacterium Methylocapsa acidiphila B2
13. Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog
14. Methanotrophic bacteria
15. The particulate methane monooxygenase gene pmoA and its use as a functional gene probe for methanotrophs
16. Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments
17. Molecular analyses of the methane-oxidizing microbial community in rice field soil by targeting the genes of the 16S rRNA, particulate methane monooxygenase, and methanol dehydrogenase
18. Molecular analyses of novel methanotrophic communities in forest soil that oxidize atmospheric methane
19. Characterization of methanotrophic bacterial populations in soils showing atmospheric methane uptake
20. Detection of methane-oxidizing bacteria in forest soil by monooxygenase PCR amplification
21. Improved method for detection of methanotrophic bacteria in forest soils by PCR
22. Isolation of a Methylocystis strain containing a novel pmoA-like gene
23. Pacific Northwest marine sediments contain ammonia-oxidizing bacteria in the β subdivision of the Proteobacteria
24. Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling
25. 4 production
26. 4 emissions
27. Methane oxidation in landfill cover soils, as revealed by potential oxidation measurements and phospholipid fatty acid analyses
28. Methylosarcina fibrata gen. nov., sp. nov. and Methylosarcina quisquiliarum sp. nov., novel type I methanotrophs
29. Methanotroph diversity in landfill soil: Isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis
30. Oxidation of atmospheric methane in soil: Measurements in the field, in soil cores, and in soil samples
31. High-affinity methane oxidation by a soil enrichment culture containing a type II methanotroph
32. Verbreitung methanotropher Bakterien
33. MPN tables, corrected
34. 2, NO)
35. Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment
36. Quantification of bias related to the extraction of DNA directly from soils
37. DNA extraction from soils: Old bias for new microbial diversity analysis methods
38. Determination of microbial diversity in environmental samples - Pitfalls of PCR-based rRNA analysis
39. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
40. Kinetics of inhibition of methane oxidation by nitrate, nitrite, and ammonium in a humisol
41. Starvation alters the apparent half-saturation constant for methane in the type II methanotroph Methylocystis strain LR1
42. + oxidation
43. Rapid methane oxidation in a landfill cover soil
44. 4 mixing ratios
45. Methanol promotes atmospheric methane oxidation by methanotrophic cultures and soils
46. +, and CO oxidation by methanotrophs and nitrifiers
47. Stable-isotope probing as a tool in microbial ecology
48. 4 on presence and activity of the indigenous methanotrophic community in rice field soil