Vertebrate genome evolution: A slow shuffle or a big bang?

BioEssays

Volumn 21, Issue 8, 1999, Pages 697-703

  Smith, Nick G C ^a,c   Knight, Robert ^b   Hurst, Laurence D ^a  

^a University of Bath ^*  (United Kingdom)

^b UNIVERSITY OF READING   (United Kingdom)

^c UNIVERSITY OF SUSSEX   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; BIOLOGICAL MODEL; EVOLUTION; GENE DUPLICATION; GENOME; HUMAN; MULTIGENE FAMILY; POLYPLOIDY; REVIEW; VERTEBRATE;

ANIMALS; EVOLUTION; GENE DUPLICATION; GENOME; GENOME, HUMAN; HUMANS; MODELS, GENETIC; MULTIGENE FAMILY; POLYPLOIDY; VERTEBRATES;

ANIMALIA; CHORDATA; VERTEBRATA;

EID: 0033180387     PISSN: 02659247     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1521-1878(199908)21:8<697::AID-BIES9>3.0.CO;2-X     Document Type: Review

References (28)

1. Lundin LG. Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse. Genomics 1993;16: 1-9.
2. Ruddle FH, Bentley KL, Murtha MT, Risch N. Gene loss and gain in the evolution of the vertebrates. Development 1994;155-161.
3. Sharman AC, Holland PWH. Conservation, duplication, and divergence of developmental genes during chordate evolution. Netherlands J Zool 1996;46:47-67.
4. Bailey WJ, Kim J, Wagner GP, Ruddle FH. Phylogenetic reconstruction of vertebrate Hox cluster duplications. Mol Biol Evol 1997;14:843-853.
5. Hughes AL. Phylogenetic tests of the hypothesis of block duplication of homologous genes on human chromosomes 6, 9, and 1. Mol Biol Evol 1998;15:854-870.
6. Endo T, Imanishi T, Gojobori T, Inoko H. Evolutionary significance of intra-genome duplications on human chromosomes. Gene 1997;205: 19-27.
7. Kasahara M, Hayashi M, Tanaka K, Inoko H, Sugaya K, Ikemura T, Ishibashi T. Chromosomal localization of the proteasome Z subunit gene reveals an ancient chromosomal duplication involving the major histocompatibility complex. Proc Natl Acad Sci USA 1996;93:9096-9101.
8. Katsanis N, Fitzgibbon J, Fisher EMC. Paralogy mapping: identification of a region in the human MHC triplicated onto human chromosomes 1 and 9 allows the prediction and isolation of novel PBX and NOTCH loci. Genomics 1996;35:101-108.
9. Patton SJ, Luke GN, Holland PWH. Complex history of a chromosomal paralogy region: Insights from amphioxus aromatic amino acid hydroxylase genes and insulin-related genes. Mol Biol Evol 1998;15:1373-1380.
10. Nadeau JH, Sankoff D. Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution Genetics 1997;147:1259-1266.
11. Wagner A. The fate of duplicated genes: loss or new function? Bioessays 1998;20:785-788.
12. Wilkins AS. Canalization: a molecular genetic perspective. Bioessays 1997;19:257-262.
13. Cooke J, Nowak MA, Boerlijst M, Maynard-Smith J. Evolutionary origins and maintenance of redundant gene expression during metazoan development. Trends Genet 1997;13:360-364.
14. Holland PWH. Vertebrate evolution: something fishy about Hox genes. Current Biology 1997;7:R570-R572.
15. Hurst LD. The evolution of genomic anatomy. TREE 1998; 14:108-112.
16. Blumenthal T. Gene clusters and polycistronic transcription in eukaryotes. Bioessays 1998;20:480-487.
17. Lyttle TW. Segregation distorters. Ann Rev Genet 1991;25:511-557.
18. Ferris PJ, Goodenough UW. The mating-type locus of Chlamydomonas reinhardtii contains highly rearranged DNA sequences. Cell 1994;76:1135-1145.
19. Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 1978;27:401-410.
20. Philippe H, Laurent J. How good are deep phylogenetic trees? Curr Opin Genet Dev 1998;8:616-623.
21. Ting CT, Tsaur SC, Wu ML, Wu CI. A rapidly evolving homeobox at the site of a hybrid sterility gene. Science 1998;282:1501-1504.
22. Nadeau JH, Sankoff D. Counting on comparative maps. Trends Genet 1998;14:495-501.
23. Duboule D, Wilkins AS. The evolution of 'bricolage'. Trends Genet 1998;14:54-59.
24. Pebusque M-J, Coulier F, Birnbaum D, Pontarotti P. Ancient large-scale genome duplications: phylogenetic and linkage analyses shed light on chordate genome evolution. Mol Biol Evol 1998;15:1145-1159.
25. http://www.cib.nig.ac.jp/dda/timanish/poster/poster.html.
26. Skrabanek L, Wolfe KH. Eukaryote genome duplication - where's the evidence? Curr Opin Genet Dev 1998;8:694-700.
27. Wolfe KH, Shields DC. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 1997;387:708-713.
28. Rowen L, Mahairas G, Hood L. Sequencing the human genome. Science 1997;278:605-607.