메뉴 건너뛰기




Volumn 311, Issue 1, 2003, Pages 215-222

Identification of isochore boundaries in the human genome using the technique of wavelet multiresolution analysis

Author keywords

Human genome; Isochores; Segmentation points; Wavelet multiresolution analysis; Z curve

Indexed keywords

MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 3;

EID: 0142027179     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2003.09.198     Document Type: Article
Times cited : (18)

References (31)
  • 1
    • 0017173987 scopus 로고
    • An approach to the organization of eukaryotic genomes at a macromolecular level
    • Macaya G., Thiery J.P., Bernardi G. An approach to the organization of eukaryotic genomes at a macromolecular level. J. Mol. Biol. 108:1976;237-254.
    • (1976) J. Mol. Biol. , vol.108 , pp. 237-254
    • Macaya, G.1    Thiery, J.P.2    Bernardi, G.3
  • 3
    • 0029587471 scopus 로고
    • The human genome: Organization and evolutionary history
    • Bernardi G. The human genome: organization and evolutionary history. Annu. Rev. Genet. 29:1995;445-476.
    • (1995) Annu. Rev. Genet. , vol.29 , pp. 445-476
    • Bernardi, G.1
  • 4
    • 0033991967 scopus 로고    scopus 로고
    • Isochores and the evolutionary genomics of vertebrates
    • Bernardi G. Isochores and the evolutionary genomics of vertebrates. Gene. 241:2000;3-17.
    • (2000) Gene , vol.241 , pp. 3-17
    • Bernardi, G.1
  • 6
    • 0035802397 scopus 로고    scopus 로고
    • Similar integration but different stability of Alus and LINEs in the human genome
    • Pavlicek A., Jabbari K., Paces J., Paces V., Hejnar J., Bernardi G. Similar integration but different stability of Alus and LINEs in the human genome. Gene. 276:2001;39-45.
    • (2001) Gene , vol.276 , pp. 39-45
    • Pavlicek, A.1    Jabbari, K.2    Paces, J.3    Paces, V.4    Hejnar, J.5    Bernardi, G.6
  • 7
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of human genome
    • Venter J.C.et al. The sequence of human genome. Science. 291:2001;1304-1351.
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1
  • 8
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander E.S.et al. Initial sequencing and analysis of the human genome. Nature. 409:2001;860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 9
    • 0028898562 scopus 로고
    • A boundary of long-range G + C% mosaic domains in the human MHC locus: Pseudoautosomal boundary-like sequence exists near the boundary
    • Fukagawa T., Sugaya K., Matsumoto K., Okumura K., Ando A., Inoko H., Ikemura T. A boundary of long-range G. + C% mosaic domains in the human MHC locus: pseudoautosomal boundary-like sequence exists near the boundary Genomics. 25:1995;184-191.
    • (1995) Genomics , vol.25 , pp. 184-191
    • Fukagawa, T.1    Sugaya, K.2    Matsumoto, K.3    Okumura, K.4    Ando, A.5    Inoko, H.6    Ikemura, T.7
  • 10
    • 0030026645 scopus 로고    scopus 로고
    • Human pseudoautosomal boundarylike sequences: Expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes
    • Fukagawa T., Nakamura Y., Okumura K., Nogami M., Ando A., Inoko H., Saiton N., Ikemura T. Human pseudoautosomal boundarylike sequences: expression and involvement in evolutionary formation of the present-day pseudoautosomal boundary of human sex chromosomes. Hum. Mol. Genet. 5:1996;123-132.
    • (1996) Hum. Mol. Genet. , vol.5 , pp. 123-132
    • Fukagawa, T.1    Nakamura, Y.2    Okumura, K.3    Nogami, M.4    Ando, A.5    Inoko, H.6    Saiton, N.7    Ikemura, T.8
  • 11
    • 0033609808 scopus 로고    scopus 로고
    • Gene organization, sequence variation and isochore structure at the centromeric boundary of the human MHC
    • Stephens R., Horton R., Humphray S., Rowen L., Trowsdale J., Beck S. Gene organization, sequence variation and isochore structure at the centromeric boundary of the human MHC. J. Mol. Biol. 291:1999;789-799.
    • (1999) J. Mol. Biol. , vol.291 , pp. 789-799
    • Stephens, R.1    Horton, R.2    Humphray, S.3    Rowen, L.4    Trowsdale, J.5    Beck, S.6
  • 13
    • 0035802410 scopus 로고    scopus 로고
    • Misunderstanding about isochores. Part 1
    • Bernardi G. Misunderstanding about isochores. Part 1. Gene. 276:2001;3-13.
    • (2001) Gene , vol.276 , pp. 3-13
    • Bernardi, G.1
  • 14
    • 0034806988 scopus 로고    scopus 로고
    • No isochores in human chromosome 21 and 22?
    • Haring D., Kypr J. No isochores in human chromosome 21 and 22? Biochem. Biophys. Res. Commun. 280:2001;567-573.
    • (2001) Biochem. Biophys. Res. Commun. , vol.280 , pp. 567-573
    • Haring, D.1    Kypr, J.2
  • 15
    • 0034755052 scopus 로고    scopus 로고
    • A novel method to calculate the G + C content of genomic DNA sequences
    • Zhang C.-T., Wang J., Zhang R. A novel method to calculate the G. + C content of genomic DNA sequences J. Biomol. Struct. Dyn. 19:2001;333-341.
    • (2001) J. Biomol. Struct. Dyn. , vol.19 , pp. 333-341
    • Zhang, C.-T.1    Wang, J.2    Zhang, R.3
  • 16
    • 0012914683 scopus 로고    scopus 로고
    • An isochore map of the human genome based on the Z curve method
    • in press
    • C.-T. Zhang, R. Zhang, An isochore map of the human genome based on the Z curve method. Gene, 2003, in press.
    • (2003) Gene
    • Zhang, C.-T.1    Zhang, R.2
  • 17
    • 84966210236 scopus 로고
    • Multiresolution approximation and wavelets
    • Mallat S. Multiresolution approximation and wavelets. Trans. Am. Math. Soc. 315:1989;69-88.
    • (1989) Trans. Am. Math. Soc. , vol.315 , pp. 69-88
    • Mallat, S.1
  • 19
    • 0025482241 scopus 로고
    • The wavelet transform, time-frequency localization and signal analysis
    • Daubechics I. The wavelet transform, time-frequency localization and signal analysis. IEEE Trans. Inform. Theory. 36:1990;961-1006.
    • (1990) IEEE Trans. Inform. Theory , vol.36 , pp. 961-1006
    • Daubechics, I.1
  • 20
    • 0037246661 scopus 로고    scopus 로고
    • Wavelet in bioinformatics and compositional biology: State of art and perspectives
    • Lio P. Wavelet in bioinformatics and compositional biology: state of art and perspectives. Bioinformatics. 19:2003;2-9.
    • (2003) Bioinformatics , vol.19 , pp. 2-9
    • Lio, P.1
  • 21
    • 0026059039 scopus 로고
    • Analysis of distribution of bases in the coding sequences by a diagrammatic technique
    • Zhang C.-T., Zhang R. Analysis of distribution of bases in the coding sequences by a diagrammatic technique. Nucleic Acids Res. 19:1991;6313-6317.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6313-6317
    • Zhang, C.-T.1    Zhang, R.2
  • 22
    • 0027995001 scopus 로고
    • Z curves, an intuitive tool for visualizing the DNA sequences
    • Zhang R., Zhang C.-T. Z curves, an intuitive tool for visualizing the DNA sequences. J. Biomol. Struct. Dyn. 11:1994;767-782.
    • (1994) J. Biomol. Struct. Dyn. , vol.11 , pp. 767-782
    • Zhang, R.1    Zhang, C.-T.2
  • 23
    • 0142122762 scopus 로고    scopus 로고
    • Isochore structures in the mouse genome
    • in press
    • C.-T. Zhang, R. Zhang, Isochore structures in the mouse genome, Genomics, 2003, in press.
    • (2003) Genomics
    • Zhang, C.-T.1    Zhang, R.2
  • 24
    • 0344721480 scopus 로고    scopus 로고
    • The MHC sequencing consortium. Complete sequence and gene map of a human major histocompatibility complex
    • Beck S.et al. The MHC sequencing consortium. Complete sequence and gene map of a human major histocompatibility complex. Nature. 401:1999;921-923.
    • (1999) Nature , vol.401 , pp. 921-923
    • Beck, S.1
  • 26
    • 0035984483 scopus 로고    scopus 로고
    • Applications of recursive segmentation to the analysis of DNA sequences
    • Li W., Bernaola-Galvan P., Haghighi F., Grosse I. Applications of recursive segmentation to the analysis of DNA sequences. Comput. Chem. 26:2002;491-510.
    • (2002) Comput. Chem. , vol.26 , pp. 491-510
    • Li, W.1    Bernaola-Galvan, P.2    Haghighi, F.3    Grosse, I.4
  • 29
    • 0035802384 scopus 로고    scopus 로고
    • Delineating relative homogeneous G + C domains in DNA sequences
    • Li W. Delineating relative homogeneous G. + C domains in DNA sequences Gene. 276:2001;57-72.
    • (2001) Gene , vol.276 , pp. 57-72
    • Li, W.1
  • 30
    • 0034682403 scopus 로고    scopus 로고
    • The DNA sequence of human chromosome 21
    • Hattori M.et al. The DNA sequence of human chromosome 21. Nature. 405:2000;311-319.
    • (2000) Nature , vol.405 , pp. 311-319
    • Hattori, M.1
  • 31
    • 79960655760 scopus 로고    scopus 로고
    • The DNA sequence of human chromosome 22
    • Dunham I.et al. The DNA sequence of human chromosome 22. Nature. 402:1999;489-495.
    • (1999) Nature , vol.402 , pp. 489-495
    • Dunham, I.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.