-
1
-
-
0001371923
-
Fast discovery of association rules
-
U. Fayyad et al., Eds. Menlo Park, CA: AAAI
-
R. Agrawal et al., "Fast discovery of association rules," in Advances in Knowledge Discovery and Data Mining, U. Fayyad et al., Eds. Menlo Park, CA: AAAI, 1996, pp. 307-328.
-
(1996)
Advances in Knowledge Discovery and Data Mining
, pp. 307-328
-
-
Agrawal, R.1
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
S. Altschul, T. Madden, A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. Lipman, "Gapped BLAST and PSI-BLAST: A new generation of protein database search programs," Nucl. Acids Res., vol. 25, no. 17, pp. 3389-402, 1997.
-
(1997)
Nucl. Acids Res.
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
3
-
-
0029974002
-
Evaluation of threading specificity and accuracy
-
S. Bryant, "Evaluation of threading specificity and accuracy," Proteins, vol. 26, no. 2, pp. 172-85, 1996.
-
(1996)
Proteins
, vol.26
, Issue.2
, pp. 172-185
-
-
Bryant, S.1
-
4
-
-
0032555696
-
Prediction of local structure in proteins using a library of sequence-structure motifs
-
C. Bystroff and D. Baker, "Prediction of local structure in proteins using a library of sequence-structure motifs," J. Molec. Biol., vol. 281, no. 3, pp. 565-77, 1998.
-
(1998)
J. Molec. Biol.
, vol.281
, Issue.3
, pp. 565-577
-
-
Bystroff, C.1
Baker, D.2
-
5
-
-
0034604368
-
HMMSTR: A hidden markov model for local sequence-structure correlations in proteins
-
C. Bystroff, V. Thorsson, and D. Baker, "HMMSTR: A hidden markov model for local sequence-structure correlations in proteins," J. Molec. Biol., vol. 30, no. 1, pp. 173-190, 2000.
-
(2000)
J. Molec. Biol.
, vol.301
, Issue.1
, pp. 173-190
-
-
Bystroff, C.1
Thorsson, V.2
Baker, D.3
-
6
-
-
0030473296
-
Kinetic intermediates in the formation of the cytochrome c molten globule
-
W. Colon and H. Roder, "Kinetic intermediates in the formation of the cytochrome c molten globule," Nature Struct. Biol., vol. 3, no. 12, pp. 1019-25, 1996.
-
(1996)
Nature Struct. Biol.
, vol.3
, Issue.12
, pp. 1019-1025
-
-
Colon, W.1
Roder, H.2
-
7
-
-
0031743421
-
Profile hidden markov models
-
S. Eddy, "Profile hidden markov models," Bioinform., vol. 14, no. 9, pp. 755-63, 1998.
-
(1998)
Bioinform.
, vol.14
, Issue.9
, pp. 755-763
-
-
Eddy, S.1
-
8
-
-
0033047710
-
A neural network based predictor of residue contacts in proteins
-
P. Fariselli and R. Casadio, "A neural network based predictor of residue contacts in proteins," Protein Eng., vol. 12, no. 1, pp. 15-21, 1999.
-
(1999)
Protein Eng.
, vol.12
, Issue.1
, pp. 15-21
-
-
Fariselli, P.1
Casadio, R.2
-
10
-
-
0029898244
-
Global properties of the mapping between local amino acid sequence and local structure in proteins
-
K. Han and D. Baker, "Global properties of the mapping between local amino acid sequence and local structure in proteins," Proc. Natl. Acad. Sci., vol. 93, no. 12, pp. 5814-5818, 1996.
-
(1996)
Proc. Natl. Acad. Sci.
, vol.93
, Issue.12
, pp. 5814-5818
-
-
Han, K.1
Baker, D.2
-
11
-
-
0028205447
-
Enlarged representative set of protein structures
-
U. Hobohm and C. Sander, "Enlarged representative set of protein structures," Protein Sci., vol. 3, no. 3, pp. 522-524, 1994.
-
(1994)
Protein Sci.
, vol.3
, Issue.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
12
-
-
0032744232
-
Protein folding: From the levinthal paradox to structure prediction
-
B. Honig, "Protein folding: From the levinthal paradox to structure prediction," J. Molec. Biol., vol. 293, no. 2, pp. 283-93, 1999.
-
(1999)
J. Molec. Biol.
, vol.293
, Issue.2
, pp. 283-293
-
-
Honig, B.1
-
13
-
-
0142200099
-
Mining protein contact maps
-
J. Hu, X. Shen, Y. Shao, C. Bystroff, and M. J. Zaki, "Mining protein contact maps," in Proc. 2nd BIOKDD Workshop Data Mining Bioinformatics, Edmonton, Canada, July 2002.
-
Proc. 2nd BIOKDD Workshop Data Mining Bioinformatics, Edmonton, Canada, July 2002
-
-
Hu, J.1
Shen, X.2
Shao, Y.3
Bystroff, C.4
Zaki, M.J.5
-
14
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
W. Kabsch and C. Sander, "Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features," Biopolymers, vol. 22, pp. 2577-2637, 1983.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
15
-
-
0033546123
-
Noe data demonstrating a compact unfolded state for an sh3 domain under nondenaturing conditions
-
Y. Mok, C. Kay, L. Kay, and J. Forman-Kay, "Noe data demonstrating a compact unfolded state for an sh3 domain under nondenaturing conditions," J. Mol. Biol., vol. 289, no. 3, pp. 619-38, 1999.
-
(1999)
J. Mol. Biol.
, vol.289
, Issue.3
, pp. 619-638
-
-
Mok, Y.1
Kay, C.2
Kay, L.3
Forman-Kay, J.4
-
16
-
-
0031019924
-
The folding pathway of a protein at high resolution from microseconds to seconds
-
B. Nolting, R. Golbik, J. Neira, A. Soler-Gonzalez, G. Schreiber, and A. Fersht, "The folding pathway of a protein at high resolution from microseconds to seconds," Proc. Natl. Acad. Sci., vol. 94, pp. 826-30, 1997.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 826-830
-
-
Nolting, B.1
Golbik, R.2
Neira, J.3
Soler-Gonzalez, A.4
Schreiber, G.5
Fersht, A.6
-
17
-
-
0030627941
-
Improving contact predictions by the combination of correlated mutations and other sources of sequence information
-
June
-
O. Olmea and A. Valencia, "Improving contact predictions by the combination of correlated mutations and other sources of sequence information," Folding Design, vol. 2, pp. S25-S32, June 1997.
-
(1997)
Folding Design
, vol.2
-
-
Olmea, O.1
Valencia, A.2
-
18
-
-
0024610919
-
A tutorial on hidden markov models and selected applications in speech recognition
-
L. Rabiner, "A tutorial on hidden markov models and selected applications in speech recognition," Proc. IEEE, vol. 77, no. 2, pp. 257-86, 1989.
-
(1989)
Proc. IEEE
, vol.77
, Issue.2
, pp. 257-286
-
-
Rabiner, L.1
-
19
-
-
0026579572
-
The folding of an enzyme. III. Structure of the transition state for unfolding of barnase analyzed by a protein engineering procedure
-
L. Serrano, A. Matouschek, and A. R. Fersht, "The folding of an enzyme. III. Structure of the transition state for unfolding of barnase analyzed by a protein engineering procedure," J. Molec. Biol., vol. 224, no. 3, pp. 805-18, 1992.
-
(1992)
J. Molec. Biol.
, vol.224
, Issue.3
, pp. 805-818
-
-
Serrano, L.1
Matouschek, A.2
Fersht, A.R.3
-
20
-
-
0031585984
-
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions
-
K. T. Simons, C. Kooperberg, E. Huang, and D. Baker, "Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions," J. Molec. Biol., vol. 268, no. 1, pp. 209-25, 1997.
-
(1997)
J. Molec. Biol.
, vol.268
, Issue.1
, pp. 209-225
-
-
Simons, K.T.1
Kooperberg, C.2
Huang, E.3
Baker, D.4
-
21
-
-
0030564892
-
Helmholtz free energy of peptide hydrogen bonds in proteins
-
M. Sippl, "Helmholtz free energy of peptide hydrogen bonds in proteins," J. Molec. Biol., vol. 260, no. 5, pp. 644-8, 1996.
-
(1996)
J. Molec. Biol.
, vol.260
, Issue.5
, pp. 644-648
-
-
Sippl, M.1
-
22
-
-
0033970623
-
Derivation of protein-specific pair potentials based on weak sequence fragment similarity
-
J. Skolnick, A. Kolinski, and A. Ortiz, "Derivation of protein-specific pair potentials based on weak sequence fragment similarity," Proteins, vol. 38, no. 1, pp. 3-16, 2000.
-
(2000)
Proteins
, vol.38
, Issue.1
, pp. 3-16
-
-
Skolnick, J.1
Kolinski, A.2
Ortiz, A.3
-
23
-
-
0029850738
-
The prediction of protein contacts from multiple sequence alignments
-
D. Thomas, G. Casari, and C. Sander, "The prediction of protein contacts from multiple sequence alignments," Protein Eng., vol. 9, no. 11, pp. 941-48, 1996.
-
(1996)
Protein Eng.
, vol.9
, Issue.11
, pp. 941-948
-
-
Thomas, D.1
Casari, G.2
Sander, C.3
-
24
-
-
0030627407
-
Recovery of protein structure from contact maps
-
Sept.
-
M. Vendruscolo, E. Kussell, and E. Domany, "Recovery of protein structure from contact maps," Folding Design, vol. 2, no. 5, pp. 295-306, Sept. 1997.
-
(1997)
Folding Design
, vol.2
, Issue.5
, pp. 295-306
-
-
Vendruscolo, M.1
Kussell, E.2
Domany, E.3
-
25
-
-
0034674175
-
Estimating the number of protein folds and families from complete genome data
-
Y. I. Wolf, N. V. Grishin, and E. V. Koonin, "Estimating the number of protein folds and families from complete genome data," J. Molec. Biol., vol. 299, no. 4, pp. 897-905, 2000.
-
(2000)
J. Molec. Biol.
, vol.299
, Issue.4
, pp. 897-905
-
-
Wolf, Y.I.1
Grishin, N.V.2
Koonin, E.V.3
-
26
-
-
0029901640
-
Analysis of compositionally biased regions in sequence databases
-
J. Wootton and S. Federhen, "Analysis of compositionally biased regions in sequence databases," Methods Enzymol, vol. 266, pp. 554-71, 1996.
-
(1996)
Methods Enzymol
, vol.266
, pp. 554-571
-
-
Wootton, J.1
Federhen, S.2
-
27
-
-
0032538302
-
Prediction and structural characterization of an independently folding substructure in the src sh3 domain
-
Q. Yi, C. Bystroff, P. Rajagopal, R. E. Klevit, and D. Baker, "Prediction and structural characterization of an independently folding substructure in the src sh3 domain," J. Molec. Biol., vol. 283, no. 1, pp. 293-300, 1998.
-
(1998)
J. Molec. Biol.
, vol.283
, Issue.1
, pp. 293-300
-
-
Yi, Q.1
Bystroff, C.2
Rajagopal, P.3
Klevit, R.E.4
Baker, D.5
-
29
-
-
0033718951
-
Scalable algorithms for association mining
-
May-June
-
____, "Scalable algorithms for association mining," IEEE Trans. Knowledge Data Eng., vol. 12, pp. 372-390, May-June 2000.
-
(2000)
IEEE Trans. Knowledge Data Eng.
, vol.12
, pp. 372-390
-
-
Zaki, M.J.1
-
30
-
-
0347709684
-
CHARM: An efficient algorithm for closed itemset mining
-
M. J. Zaki and C.-J. Hsiao, "CHARM: An efficient algorithm for closed itemset mining," in Proc. 2nd SIAM Int. Conf. Data Mining, Arlington, VA, Apr. 2002.
-
Proc. 2nd SIAM Int. Conf. Data Mining, Arlington, VA, Apr. 2002
-
-
Zaki, M.J.1
Hsiao, C.-J.2
-
31
-
-
0034646196
-
Environment-dependent residue contact energies for proteins
-
C. Zhao and S.-H. Kim, "Environment-dependent residue contact energies for proteins," Proc. Natl. Acad. Sci., vol. 97, no. 6, pp. 2550-5, 2000.
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, Issue.6
, pp. 2550-2555
-
-
Zhao, C.1
Kim, S.-H.2
|