Recent developments in analytical and functional protein microarrays

Current Opinion in Molecular Therapeutics

Volumn 5, Issue 3, 2003, Pages 271-277

  Jona, Ghil ^a   Snyder, Michael ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

Analytical; Functional; Microarray; Protein; Proteome

Indexed keywords

ALLERGEN; ANTIBODY; ANTIGEN; APTAMER; CARBOHYDRATE; DNA; G PROTEIN COUPLED RECEPTOR; PEPTIDE; PROTEIN;

ANTIGEN ANTIBODY COMPLEX; BIOCHEMISTRY; CONCENTRATION (PARAMETERS); DISEASE MARKER; DNA MICROARRAY; DRUG RESEARCH; ENZYME LINKED IMMUNOSORBENT ASSAY; ENZYME MODIFICATION; GENOMICS; NONHUMAN; PROTEIN ANALYSIS; PROTEIN DETERMINATION; PROTEIN FUNCTION; PROTEIN INTERACTION; PROTEIN PROCESSING; PROTEIN PROTEIN INTERACTION; REVIEW; SURFACE PLASMON RESONANCE;

ANTIBODIES; HUMANS; PROTEIN ARRAY ANALYSIS; PROTEINS;

EID: 0141613684     PISSN: 14648431     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (46)

1. Heller MJ: DNA microarray technology: Devices, systems, and applications. Annu Rev Biomed Eng (2002) 4:129-153.
2. Bulyk ML, Gentalen E, Lockhart DJ, Church GM: Quantifying DNA-protein interactions by double-stranded DNA arrays. Nat Biotechnol (1999) 17(6):573-577.
3. Blohm DH, Guiseppi-Elie A: New developments in microarray technology. Curr Opin Biotechnol (2001) 12(1):41-47.
4. Eisen MB, Brown PO: DNA arrays for analysis of gene expression. Methods Enzymol (1999) 303:179-205.
5. 1/S transition in Saccharomyces cerevisiae. Genes Dev (2002) 16(23):3017-3033.
6. Iyer VR, Horak CE, Scafe CS, Botstein D, Snyder M, Brown PO: Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature (2001) 409(6819):533-538.
7. Gygi SP, Rochon Y, Franza BR, Aebersold R: Correlation between protein and mRNA abundance in yeast. Mol Cell Biol (1999) 19(3):1720-1730.
8. de Wildt RMT, Mundy CR, Gorick BD, Tomlinson IM: Antibody arrays for high-throughput screening of antibody-antigen interactions. Nat Biotechnol (2000) 18(9):989-994.
9. Ge H: UPA, a universal protein array system for quantitative detection of protein-protein, protein-DNA, protein-RNA and protein-ligand interactions. Nucleic Acids Res (2000) 28(2):e3.
10. Joos TO, Schrenk M, Hopfl P, Kroger K, Chowdhury U, Stoll D, Schomer D, Durr M, Herick K, Rupp S, Sohn K et al: A microarray enzyme-linked immunosorbent assay for autoimmune diagnostics. Electrophoresis (2000) 21(13):2641-2650.
11. Houseman BT, Mrksich M: Towards quantitative assays with peptide chips: A surface engineering approach. Trends Biotechnol (2002) 20(7):279-281.
12. Arenkov P, Kukhtin A, Gemmell A, Voloshchuk S, Chupeeva V, Mirzabekov A: Protein microchips: Use for Immunoassay and enzymatic reactions. Anal Biochem (2000) 278(2):123-131.
13. MacBeath G, Schreiber SL: Printing proteins as microarrays for high-throughput function determination. Science (2000) 289(5485):1760-1763.
14. Wang D, Liu S, Trummer BJ, Deng C, Wang A: Carbohydrate microarrays for the recognition of cross-reactive molecular markers of microbes and host cells. Nat Biotechnol (2002) 20(3):275-281.
15. Zhu H, Klemic JF, Chang S, Bertone P, Casamayor A, Klemic KG, Smith D, Gerstein M, Reed MA, Snyder M: Analysis of yeast protein kinases using protein chips. Nat Genet (2000) 26(3):283-289.
16. Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T et al: Global analysis of protein activities using proteome chips. Science (2001) 293(5537):2101-2105.
17. Lopez MF, Pluskal MG: Protein micro- and macro-arrays: Digitizing the proteome. J Chromatogr B Analyt Technol Biomed Life Sci (2003) 787(1):19-27.
18. Zhu H, Snyder M: Protein chip technology. Curr Opin Chem Biol (2003) 7(1):55-63.
19. Lee YS, Mrksich M: Protein chips: From concept to practice. Trends Biotechnol (2002) 20(Suppl 12):14-18.
20. Houseman BT, Mrksich M: Carbohydrate arrays for the evaluation of protein binding and enzymatic modification. Chem Biol (2002) 9(4):443-454.
21. Houseman BT, Huh JH, Kron SJ, Mrksich M: Peptide chips for the quantitative evaluation of protein kinase activity. Nat Biotechnol (2002) 20(3):270-274.
22. Houseman BT, Gawalt ES, Mrksich M: Maleimide-functionalized self-assembled monolayers for the preparation of peptide and carbohydrate biochips. Langmuir (2003) 19(5):1522-1531.
23. Hodneland CD, Lee YS, Min DH, Mrksich M: Selective immobilization of proteins to self-assembled monolayers presenting active site-directed capture ligands. Proc Natl Acad Sci USA (2002) 99(8):5048-5052.
24. Kusnezow W, Jacob A, Walijew A, Diehl F, Hoheisel JD: Antibody microarrays: An evaluation of production parameters. Proteomics (2003) 3(3):254-264.
25. Haab BB, Dunham MJ, Brown PO: Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol (2001) 2(2):RESEARCH0004-0004.13.
26. Huang RP, Huang R, Fan Y, Lin Y: Simultaneous detection of multiple cytokines from conditioned media and patient's sera by an antibody-based protein array system. Anal Biochem (2001) 294(1):55-62.
27. Moody MD, Van Arsdell SW, Murphy KP, Orencole SF, Burns C: Array-based ELISAs for high-throughput analysis of human cytokines. Biotechniques (2001) 31(1):186-190.
28. Brockman JM, Nelson BP, Corn RM: Surface plasmon resonance imaging measurements of ultrathin organic films. Annu Rev Phys Chem (2000) 51:41-63.
29. Wegner GJ, Lee HJ, Corn RM: Characterization and optimization of peptide arrays for the study of epitope-antibody interactions using surface plasmon resonance imaging. Anal Chem (2002) 74(20):5161-5168.
30. Zhu H, Snyder M: Protein arrays and microarrays. Curr Opin Chem Biol (2001) 5(1):40-45.
31. Mendoza LG, McQuary P, Mongan A, Gangadharan R, Brignac S, Eggers M: High-throughput microarray-based enzyme-linked Immunosorbent assay (ELISA). Biotechniques (1999) 27(4):778-780.
32. Sreekumar A, Nyati MK, Varambally S, Barrette TR, Ghosh D, Lawrence TS, Chinnaiyan AM: Profiling of cancer cells using protein microarrays: Discovery of novel radiation-regulated proteins. Cancer Res (2001) 61(20):7585-7593.
33. Miller JC, Zhou H, Kwekel J, Cavallo R, Burke J, Butler EB, Teh BS, Haab BB: Antibody microarray profiling of human prostate cancer sera: Antibody screening and identification of potential biomarkers. Proteomics (2003) 3(1):56-63.
34. Brody EN, Gold L: Aptamers as therapeutic and diagnostic agents. J Biotechnol (2000) 74(1):5-13.
35. Petach H, Gold L: Dimensionality is the issue: Use of photoaptamers in protein microarrays. Curr Opin Biotechnol (2002) 13(4):309-314.
36. Hamaguchi N, Ellington A, Stanton M: Aptamer beacons for the direct detection of proteins. Anal Biochem (2001) 294(2):126-131.
37. Fall BI, Eberlein-Konig B, Behrendt H, Niessner R, Ring J, Weller MG: Microarrays for the screening of allergen-specific IgE in human serum. Anal Chem (2003) 75(3):556-562.
38. Kim TE, Park SW, Cho NY, Choi SY, Yong TS, Nahm BH, Lee S, Noh G: Quantitative measurement of serum allergen-specific IgE on protein chip. Exp Mol Med (2002) 34(2):152-158.
39. Hiller R, Laffer S, Harwanegg C, Huber M, Schmidt WM, Twardosz A, Barletta B, Becker WM, Blaser K, Breiteneder H, Chapman M et al: Microarrayed allergen molecules: Diagnostic gatekeepers for allergy treatment. FASEB J (2002) 16(3):414-416.
40. Robinson WH, DiGennaro C, Hueber W, Haab BB, Kamachi M, Dean EJ, Fournel S, Fong D, Genovese MC, de Vegvar HEN, Skriner K et al: Autoantigen microarrays for multiplex characterization of autoantibody responses. Nat Med (2002) 8(3):295-301.
41. Lesaicherre M-L, Uttamchandani M, Chen GYJ, Yao SQ: Antibody-based fluorescence detection of kinase activity on a peptide array. Bioorg Med Chem Lett (2002) 12(16):2085-2088.
42. Lee KB, Park SJ, Mirkin CA, Smith JC, Mrksich M: Protein nanoarrays generated by dip-pen nanolithography. Science (2002) 295(5560):1702-1705.
43. Snyder M, Gerstein M: Genomics. Defining genes in the genomics era. Science (2003) 300(5617):258-260.
44. Sawasaki T, Hasegawa Y, Tsuchimochi M, Kamura N, Ogasawara T, Kuroita T, Endo Y: A bilayer cell-free protein synthesis system for high-throughput screening of gene products. FEBS Lett (2002) 514(1):102-105.
45. Sawasaki T, Ogasawara T, Morishita R, Endo Y: A cell-free protein synthesis system for high-throughput proteomics. Proc Natl Acad Sci USA (2002) 99(23):14652-14657.
46. Fang Y, Frutos AG, Lahiri J: Membrane protein microarrays. J Am Chem Soc (2002) 124(11):2394-2395.