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Volumn 57, Issue 9, 2003, Pages 2101-2118

Linear habitats and the nested clade analysis: An empirical evaluation of geographic versus river distances using an Ozark crayfish (Decapoda: Cambaridae)

Author keywords

Cambaridae; Crayfish; Genetic variation; Linear habitats; Nested clade analysis; Phylogeography

Indexed keywords

CLADISTICS; CRAYFISH; GENETIC VARIATION; LINEARITY; PHYLOGEOGRAPHY;

EID: 0141539422     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.0014-3820.2003.tb00388.x     Document Type: Article
Times cited : (84)

References (49)
  • 1
    • 0035089776 scopus 로고    scopus 로고
    • The evolutionary history of brown trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation
    • Bernatchez, L. 2001. The evolutionary history of brown trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation. Evolution 55: 351-379.
    • (2001) Evolution , vol.55 , pp. 351-379
    • Bernatchez, L.1
  • 2
    • 0035046735 scopus 로고    scopus 로고
    • A microbial population-species interface: Nested cladistic and coalescent inference with multilocus data
    • Carbone, I., and L. M. Kohn. 2001. A microbial population-species interface: nested cladistic and coalescent inference with multilocus data. Mol. Ecol. 10:947-964.
    • (2001) Mol. Ecol. , vol.10 , pp. 947-964
    • Carbone, I.1    Kohn, L.M.2
  • 3
    • 0028456728 scopus 로고
    • Root probabilities for intraspecific gene trees under neutral coalescent theory
    • Castelloe, J., and A. R. Templeton. 1994. Root probabilities for intraspecific gene trees under neutral coalescent theory. Mol. Phylogenet. Evol. 3:102-113.
    • (1994) Mol. Phylogenet. Evol. , vol.3 , pp. 102-113
    • Castelloe, J.1    Templeton, A.R.2
  • 4
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • Clement, M., D. Posada, and K. A. Crandall. 2000. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9:1657-1659.
    • (2000) Mol. Ecol. , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 5
    • 0030032992 scopus 로고    scopus 로고
    • Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences
    • Crandall, K. A. 1996. Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences. Mol. Biol. Evol. 13:115-131.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 115-131
    • Crandall, K.A.1
  • 6
    • 0030336348 scopus 로고    scopus 로고
    • Crayfish molecular systematics: Using a combination of procedures to estimate phylogeny
    • Crandall, K. A., and J. F. Fitzpatrick, Jr. 1996. Crayfish molecular systematics: using a combination of procedures to estimate phylogeny. Syst. Biol. 45:1-26.
    • (1996) Syst. Biol. , vol.45 , pp. 1-26
    • Crandall, K.A.1    Fitzpatrick J.F., Jr.2
  • 7
    • 0027285731 scopus 로고
    • Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction
    • Crandall, K. A., and A. R. Templeton. 1993. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134:959-969.
    • (1993) Genetics , vol.134 , pp. 959-969
    • Crandall, K.A.1    Templeton, A.R.2
  • 8
    • 0033027847 scopus 로고    scopus 로고
    • The zoogeography and centers of origin of the crayfish subgenus Procericambarus (Decapoda: Cambaridae)
    • _. 1999. The zoogeography and centers of origin of the crayfish subgenus Procericambarus (Decapoda: Cambaridae). Evolution 53:123-134.
    • (1999) Evolution , vol.53 , pp. 123-134
  • 9
    • 0002434154 scopus 로고
    • Intraspecific phylogenetics: Problems and solutions
    • R. W. Scotland, D. J. Siebert, and D. M. Williams, eds. Clarendon Press, Oxford, U.K.
    • Crandall, K. A., A. R. Templeton, and C. F. Sing. 1994. Intraspecific phylogenetics: problems and solutions. Pp. 273-297 in R. W. Scotland, D. J. Siebert, and D. M. Williams, eds. Models in phylogeny reconstruction. Clarendon Press, Oxford, U.K.
    • (1994) Models in Phylogeny Reconstruction , pp. 273-297
    • Crandall, K.A.1    Templeton, A.R.2    Sing, C.F.3
  • 10
    • 0033060558 scopus 로고    scopus 로고
    • Phylogenetic relationships among the Australian and New Zealand genera of freshwater crayfishes (Decapoda: Parastacidae)
    • Crandall, K. A., J. W. Fetzner, Jr., S. H. Lawler, M. Kinnersley, and C. M. Austin. 1999. Phylogenetic relationships among the Australian and New Zealand genera of freshwater crayfishes (Decapoda: Parastacidae). Aust. J. Zool. 47:199-214.
    • (1999) Aust. J. Zool. , vol.47 , pp. 199-214
    • Crandall, K.A.1    Fetzner J.W., Jr.2    Lawler, S.H.3    Kinnersley, M.4    Austin, C.M.5
  • 11
    • 0001497134 scopus 로고
    • Fishes in the Western Mississippi drainage
    • C. H. Hocutt and E. O. Wiley, eds. John Wiley and Sons, New York
    • Cross, F. B., R. L. Mayden, and J. D. Stewart. 1986. Fishes in the Western Mississippi drainage. Pp. 363-412 in C. H. Hocutt and E. O. Wiley, eds. The zoogeography of North American freshwater fishes. John Wiley and Sons, New York.
    • (1986) The Zoogeography of North American Freshwater Fishes , pp. 363-412
    • Cross, F.B.1    Mayden, R.L.2    Stewart, J.D.3
  • 12
    • 0033635974 scopus 로고    scopus 로고
    • Paleoecology and coalescence: Phylogeographic analysis of hypotheses from the fossil record
    • Cruzan, M. B., and A. R. Templeton. 2000. Paleoecology and coalescence: phylogeographic analysis of hypotheses from the fossil record. Trends Ecol. Evol. 15:491-496.
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 491-496
    • Cruzan, M.B.1    Templeton, A.R.2
  • 13
    • 1842330244 scopus 로고    scopus 로고
    • Phylogeographic structure of white oaks throughout the European continent
    • Dumolin-Lapegue, S., B. Demesure, S. Fineschi, V. Le Corre, and R. Petit. 1997. Phylogeographic structure of white oaks throughout the European continent. Genetics 146:1475-1487.
    • (1997) Genetics , vol.146 , pp. 1475-1487
    • Dumolin-Lapegue, S.1    Demesure, B.2    Fineschi, S.3    Le Corre, V.4    Petit, R.5
  • 14
    • 0035576346 scopus 로고    scopus 로고
    • Revealing the demographic histories of species using DNA sequences
    • Emerson, B. C., E. Paradis, and C. Thébaud. 2001. Revealing the demographic histories of species using DNA sequences. Trends Ecol. Evol. 16:707-716.
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 707-716
    • Emerson, B.C.1    Paradis, E.2    Thébaud, C.3
  • 15
    • 0001324738 scopus 로고
    • Life history, distribution, and status of Pacifastacus fortis (Decapoda: Astacidae)
    • Eng, L. L., and R. A. Daniels. 1982. Life history, distribution, and status of Pacifastacus fortis (Decapoda: Astacidae). California Fish and Game 68:197-212.
    • (1982) California Fish and Game , vol.68 , pp. 197-212
    • Eng, L.L.1    Daniels, R.A.2
  • 16
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier, L., P. E. Smouse, and J. M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 17
    • 0036834802 scopus 로고    scopus 로고
    • Evaluation of the Amazon River delta as a barrier to gene flow for the regional malaria vector, Anopheles aquasalis (Diptera: Culicidae) in northeastern Brazil
    • Fairley, T. L., M. M. Povoa, and J. E. Conn. 2002. Evaluation of the Amazon River delta as a barrier to gene flow for the regional malaria vector, Anopheles aquasalis (Diptera: Culicidae) in northeastern Brazil. J. Med. Entomol. 39:861-869.
    • (2002) J. Med. Entomol. , vol.39 , pp. 861-869
    • Fairley, T.L.1    Povoa, M.M.2    Conn, J.E.3
  • 18
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 19
    • 0030039307 scopus 로고    scopus 로고
    • Biochemical systematics and evolution of the crayfish genus Orconectes (Decapoda: Cambaridae)
    • Fetzner, J. W., Jr. 1996. Biochemical systematics and evolution of the crayfish genus Orconectes (Decapoda: Cambaridae). J. Crust. Biol. 16:111-141.
    • (1996) J. Crust. Biol. , vol.16 , pp. 111-141
    • Fetzner J.W., Jr.1
  • 20
    • 0003353623 scopus 로고    scopus 로고
    • Genetic variation
    • D. M. Holdich, ed. Blackwell Scientific, Oxford, U.K.
    • Fetzner, J. W., Jr., and K. A. Crandall. 2001. Genetic variation. Pp. 291-326 in D. M. Holdich, ed. Biology of freshwater crayfish. Blackwell Scientific, Oxford, U.K.
    • (2001) Biology of Freshwater Crayfish , pp. 291-326
    • Fetzner J.W., Jr.1    Crandall, K.A.2
  • 21
    • 0030851808 scopus 로고    scopus 로고
    • Genetic implications of broodstock selection for crayfish aquaculture in the Midwestern United States
    • Fetzner, J. W., Jr., R. J. Sheehan, and L. W. Seeb. 1997. Genetic implications of broodstock selection for crayfish aquaculture in the Midwestern United States. Aquaculture 154:39-55.
    • (1997) Aquaculture , vol.154 , pp. 39-55
    • Fetzner J.W., Jr.1    Sheehan, R.J.2    Seeb, L.W.3
  • 22
    • 0036845327 scopus 로고    scopus 로고
    • Intraspecific phylogeography of the slender madtom: The complex evolutionary history of the Central Highlands of the United States
    • Hardy, M. E., J. M. Grady, and E. J. Routman. 2002. Intraspecific phylogeography of the slender madtom: the complex evolutionary history of the Central Highlands of the United States. Mol. Ecol. 11:2393-2403.
    • (2002) Mol. Ecol. , vol.11 , pp. 2393-2403
    • Hardy, M.E.1    Grady, J.M.2    Routman, E.J.3
  • 23
    • 0035143418 scopus 로고    scopus 로고
    • Nested clade analysis of the freshwater shrimp, Caridina zebra (Decapoda: Atyidae), from north-eastern Australia
    • Hurwood, D. A., and J. M. Hughes. 2001. Nested clade analysis of the freshwater shrimp, Caridina zebra (Decapoda: Atyidae), from north-eastern Australia. Mol. Ecol. 10:113-125.
    • (2001) Mol. Ecol. , vol.10 , pp. 113-125
    • Hurwood, D.A.1    Hughes, J.M.2
  • 24
    • 0036900040 scopus 로고    scopus 로고
    • Statistical phylogeography
    • Knowles, L. L., and W. P. Maddison. 2002. Statistical phylogeography. Mol. Ecol. 11:2623-2635.
    • (2002) Mol. Ecol. , vol.11 , pp. 2623-2635
    • Knowles, L.L.1    Maddison, W.P.2
  • 25
    • 0034238279 scopus 로고    scopus 로고
    • Nonindigenous crayfishes threaten North American freshwater biodiversity
    • Lodge, D. M., C. A. Taylor, D. M. Holdich, and J. Skurdal. 2000. Nonindigenous crayfishes threaten North American freshwater biodiversity. Fisheries 25:7-20.
    • (2000) Fisheries , vol.25 , pp. 7-20
    • Lodge, D.M.1    Taylor, C.A.2    Holdich, D.M.3    Skurdal, J.4
  • 26
    • 0030184676 scopus 로고    scopus 로고
    • Inter-basin transfer of aquatic biota via anglers' bait buckets
    • Ludwig, H. R., Jr., and J. A. Leitch. 1996. Inter-basin transfer of aquatic biota via anglers' bait buckets. Fisheries 21:14-18.
    • (1996) Fisheries , vol.21 , pp. 14-18
    • Ludwig H.R., Jr.1    Leitch, J.A.2
  • 27
    • 0000907328 scopus 로고
    • Biogeography of Ouachita Highland fishes
    • Mayden, R. L. 1985. Biogeography of Ouachita Highland fishes. Southw. Naturalist 30:195-211.
    • (1985) Southw. Naturalist , vol.30 , pp. 195-211
    • Mayden, R.L.1
  • 28
    • 84963042126 scopus 로고
    • Vicariance biogeography, parsimony, and evolution in North American freshwater fishes
    • _. 1988. Vicariance biogeography, parsimony, and evolution in North American freshwater fishes. Syst. Zool. 37:329-355.
    • (1988) Syst. Zool. , vol.37 , pp. 329-355
  • 29
    • 0000586432 scopus 로고
    • A distributional study of Missouri fishes
    • Pflieger, W. L. 1971. A distributional study of Missouri fishes. Univ. Kans. Publ. Mus. Nat. Hist. 20:226-570.
    • (1971) Univ. Kans. Publ. Mus. Nat. Hist. , vol.20 , pp. 226-570
    • Pflieger, W.L.1
  • 30
    • 0034100234 scopus 로고    scopus 로고
    • GeoDis: A program for the cladistic nested analysis of the geographical distribution of genetic haplotypes
    • Posada, D., K. A. Crandall, and A. R. Templeton. 2000. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol. Ecol. 9:487-488.
    • (2000) Mol. Ecol. , vol.9 , pp. 487-488
    • Posada, D.1    Crandall, K.A.2    Templeton, A.R.3
  • 31
    • 0033911330 scopus 로고    scopus 로고
    • An integrated framework for the inference of viral population history from reconstructed genealogies
    • Pybus, O. G., A. Rambaut, and P. H. Harvey. 2000. An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155:1429-1437.
    • (2000) Genetics , vol.155 , pp. 1429-1437
    • Pybus, O.G.1    Rambaut, A.2    Harvey, P.H.3
  • 32
    • 0001634736 scopus 로고
    • Zoogeographic implications of the Mississippi River basin
    • C. H. Hocutt and E. O. Wiley, eds. John Wiley and Sons, New York
    • Robison, H. W. 1986. Zoogeographic implications of the Mississippi River basin. Pp. 267-285 In C. H. Hocutt and E. O. Wiley, eds. The zoogeography of North American freshwater fishes. John Wiley and Sons, New York.
    • (1986) The Zoogeography of North American Freshwater Fishes , pp. 267-285
    • Robison, H.W.1
  • 33
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers, A. R., and H. Harpending. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9:552-569.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 34
    • 0040704233 scopus 로고
    • Mitochondrial DNA variation in Cryptobranchus alleganiensis, a salamander with extremely low allozyme diversity
    • Routman, E. J. 1993. Mitochondrial DNA variation in Cryptobranchus alleganiensis, a salamander with extremely low allozyme diversity. Copeia 1993:407-416.
    • (1993) Copeia , vol.1993 , pp. 407-416
    • Routman, E.J.1
  • 35
    • 0000482926 scopus 로고
    • Parsimony, molecular evolution, and biogeography: The case of the North American giant salamander
    • Routman, E. J., R. Wu, and A. R. Templeton. 1994. Parsimony, molecular evolution, and biogeography: the case of the North American giant salamander. Evolution 48:1799-1809.
    • (1994) Evolution , vol.48 , pp. 1799-1809
    • Routman, E.J.1    Wu, R.2    Templeton, A.R.3
  • 37
    • 0036006350 scopus 로고    scopus 로고
    • Gene flow, dispersal, and nested clade analysis among populations of the stonefly Peltoperla tarteri in the southern Appalachians
    • Schultheis, A. S., L. A. Weigt, and A. C. Hendricks. 2002. Gene flow, dispersal, and nested clade analysis among populations of the stonefly Peltoperla tarteri in the southern Appalachians. Mol. Ecol. 11:317-327.
    • (2002) Mol. Ecol. , vol.11 , pp. 317-327
    • Schultheis, A.S.1    Weigt, L.A.2    Hendricks, A.C.3
  • 38
    • 0035076107 scopus 로고    scopus 로고
    • Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American rivers
    • Sivasundar, A., E. Bermingham, and G. Ortí. 2001a. Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American rivers. Mol. Ecol. 10:407-417.
    • (2001) Mol. Ecol. , vol.10 , pp. 407-417
    • Sivasundar, A.1    Bermingham, E.2    Ortí, G.3
  • 39
    • 0035076107 scopus 로고    scopus 로고
    • Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American rivers
    • _. 2001b. Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American rivers. Mol. Ecol. 10:407-417.
    • (2001) Mol. Ecol. , vol.10 , pp. 407-417
  • 40
    • 0028816747 scopus 로고
    • A measure of population subdivision based on microsatellite allele frequencies
    • Slatkin, M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139:457-462.
    • (1995) Genetics , vol.139 , pp. 457-462
    • Slatkin, M.1
  • 42
    • 0032055149 scopus 로고    scopus 로고
    • Nested clade analyses of phylogeographic data: Testing hypotheses about gene flow and population history
    • Templeton, A. R. 1998. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol. Ecol. 7:381-397.
    • (1998) Mol. Ecol. , vol.7 , pp. 381-397
    • Templeton, A.R.1
  • 43
    • 0035047252 scopus 로고    scopus 로고
    • Using phylogeographic analyses of gene trees to test species status and processes
    • _. 2001. Using phylogeographic analyses of gene trees to test species status and processes. Mol. Ecol. 10:779-791.
    • (2001) Mol. Ecol. , vol.10 , pp. 779-791
  • 44
    • 0027278852 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination
    • Templeton, A. R., and C. F. Sing. 1993. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics 134:659-669.
    • (1993) Genetics , vol.134 , pp. 659-669
    • Templeton, A.R.1    Sing, C.F.2
  • 45
    • 0023425198 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila
    • Templeton, A. R., E. Boerwinkle, and C. F. Sing. 1987. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics 117:343-351.
    • (1987) Genetics , vol.117 , pp. 343-351
    • Templeton, A.R.1    Boerwinkle, E.2    Sing, C.F.3
  • 46
    • 0029058158 scopus 로고
    • Separating population structure from population history: A cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum
    • Templeton, A. R., E. Routman, and C. A. Phillips. 1995. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140: 767-782.
    • (1995) Genetics , vol.140 , pp. 767-782
    • Templeton, A.R.1    Routman, E.2    Phillips, C.A.3
  • 48
    • 0033977070 scopus 로고    scopus 로고
    • Nested cladistic analysis indicates population fragmentation shapes genetic diversity in a freshwater mussel
    • Turner, T. F., J. C. Trexler, J. L. Harris, and J. L. Haynes. 2000. Nested cladistic analysis indicates population fragmentation shapes genetic diversity in a freshwater mussel. Genetics 154: 777-785.
    • (2000) Genetics , vol.154 , pp. 777-785
    • Turner, T.F.1    Trexler, J.C.2    Harris, J.L.3    Haynes, J.L.4
  • 49
    • 0034072196 scopus 로고    scopus 로고
    • Range expansion of golden crayfish, Orconectes luteus, in the Mississippi River
    • Wetzel, J. E., and W. J. Poly. 2000. Range expansion of golden crayfish, Orconectes luteus, in the Mississippi River. Journal of Freshwater Ecology 15:281-282.
    • (2000) Journal of Freshwater Ecology , vol.15 , pp. 281-282
    • Wetzel, J.E.1    Poly, W.J.2


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