Functional and structural analyses of cryptochrome. Vertebrate CRY regions responsible for interaction with the CLOCK:BMAL1 heterodimer and its nuclear localization

Journal of Biological Chemistry

Volumn 278, Issue 37, 2003, Pages 35620-35628

  Hirayama, Jun ^a   Nakamura, Haruki ^b   Ishikawa, Tomoko ^a   Kobayashi, Yuri ^a   Todo, Takeshi ^a  

^a KYOTO UNIVERSITY   (Japan)

^b OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; MUTAGENESIS; PROTEINS;

TRANSCRIPTION;

DIMERS;

CYTOCHROME; DEOXYRIBODIPYRIMIDINE PHOTOLYASE; DIMER; PROTEIN BMAL1; TRANSCRIPTION FACTOR CLOCK; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARTICLE; CELL NUCLEUS; CONTROLLED STUDY; EMBRYO; ENZYME STRUCTURE; GENE MUTATION; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; PROTEIN TRANSPORT; SPECIES DIFFERENCE; TRANSCRIPTION REGULATION; TRANSCRIPTION TERMINATION; VERTEBRATE; ZEBRA FISH;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; BIOLOGICAL CLOCKS; DNA PRIMERS; DROSOPHILA PROTEINS; ESCHERICHIA COLI; EYE PROTEINS; FLAVOPROTEINS; MICE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHOTORECEPTORS, INVERTEBRATE; PROTEIN CONFORMATION; RECEPTORS, G-PROTEIN-COUPLED; RECOMBINANT FUSION PROTEINS; REPRESSOR PROTEINS; RESTRICTION MAPPING; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION, GENETIC; ZEBRAFISH;

ANIMALIA; DANIO RERIO; VERTEBRATA;

EID: 0042817947     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M305028200     Document Type: Article

References (42)

1. Dunlap, J. C. (1999) Cell 96, 271-290
2. King, D. P., and Takahashi, J. S. (2000) Annu. Rev. Neurosci. 23, 713-742
3. Reppert, S. M., and Weaver, D. R. (2001) Annu. Rev. Physiol. 63, 647-676
4. Saez, L., and Young, M. W. (1996) Neuron 17, 911-920
5. Gekakis, N., Saez, L., Delahaye-Brown, A. M., Myers, M. P., Sehgal, A., Young, M. W., and Weitz, C. J. (1995) Science 270, 811-815
6. Sehgal, A., Rothenfluh-Hilfiker, A., Hunter-Ensor, M., Chen, Y., Myers, M. P., and Young, M. W. (1995) Science 270, 808-810
7. Kume, K., Zylka, M. J., Sriram, S., Shearman, L. P., Weaver, D. R., Jin, X., Maywood, E. S., Hastings, M. H., and Reppert, S. M. (1999) Cell 98, 193-205
8. Griffin, E. A., Jr., Staknis, D., and Weitz, C. J. (1999) Science 286, 768-771
9. Stanewsky, R., Kaneko, M., Emery, P., Beretta, B., Wager-Smith, K., Kay, S. A., Rosbash, M., and Hall, J. C. (1998) Cell 95, 681-692
10. Emery, P., So, W. V., Kaneko, M., Hall, J. C., and Rosbash, M. (1998) Cell 95, 669-679
11. Ishikawa, T., Matsumoto, A., Kato, T., Jr., Togashi, S., Ryo, H., Ikenaga, M., Todo, T., Ueda, R., and Tanimura, T. (1999) Genes Cells 4, 57-65
12. Rosato, E., Codd, V., Mazzotta, G., Piccin, A., Zordan, M., Costa, R., and Kyriacou, C. P. (2001) Curr. Biol. 11, 909-917
13. Ceriani, M. F., Darlington, T. K., Staknis, D., Mas, P., Petti, A. A., Weitz, C. J., and Kay, S. A. (1999) Science 285, 553-556
14. Vitaterna, M. H., Selby, C. P., Todo, T., Niwa, H., Thompson, C., Fruechte, E. M., Hitomi, K., Thresher, R. J., Ishikawa, T., Miyazaki, J., Takahashi, J. S., and Sancar, A. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 12114-12119
15. Cermakian, N., Whitmore, D., Foulkes, N. S., and Sassone-Corsi, P. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 4339-4344
16. Kobayashi, Y., Ishikawa, T., Hirayama, J., Daiyasu, H., Kanai, S., Toh, H., Fukuda, I., Tsujimura, T., Terada, N., Kamei, Y., Yuba, S., Iwai, S., and Todo, T. (2000) Genes Cells 5, 725-738
17. Pando, M. P., Pinchak, A. B., Cermakian, N., and Sassone-Corsi, P. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 10178-10183
18. Cahill, G. M. (2002) Cell Tissue Res. 309, 27-34
19. Ishikawa, T., Hirayama, J., Kobayashi, Y., and Todo, T. (2002) Genes Cells 7, 1073-1086
20. Hirayama, J., Fukuda, I., Ishikawa, T., Kobayashi, Y., and Todo, T. (2003) Nucleic Acids Res. 31, 935-943
21. Todo, T., Ryo, H., Yamamoto, K., Toh, H., Inui, T., Ayaki, H., Nomura, T., and Ikenaga, M. (1996) Science 272, 109-112
22. Todo, T. (1999) Mutat. Res. 434, 89-97
23. Cashmore, A. R., Jarillo, J. A., Wu, Y. J., and Liu, D. (1999) Science 284, 760-765
24. Todo, T., Takemori, H., Ryo, H., Ihara, M., Matsunaga, T., Nikaido, O., Sato, K., and Nomura, T. (1993) Nature 361, 371-374
25. Sancar, A. (1994) Biochemistry 33, 2-9
26. Hitomi, K., Nakamura, H., Kim, S. T., Mizukoshi, T., Ishikawa, T., Iwai, S., and Todo, T. (2001) J. Biol. Chem. 276, 10103-10109
27. Hsu, D. S., Zhao, X., Zhao, S., Kazantsev, A., Wang, R. P., Todo, T., Wei, Y. F., and Sancar, A. (1996) Biochemistry 35, 13871-13877
28. Todo, T., Tsuji, H., Otoshi, E., Hitomi, K., Kim, S. T., and Ikenaga, M. (1997) Mutat. Res. 384, 195-204
29. Sancar, A. (2000) Annu. Rev. Biochem. 69, 31-67
30. Yamamoto, K., Okano, T., and Fukada, Y. (2001) Neurosci. Lett. 313, 13-16
31. Nakamura, H., Katayanagi, K., Morikawa, K., and Ikehara, M. (1991) Nucleic Acids Res. 19, 1817-1823
32. Tanimura, R., Kidera, A., and Nakamura, H. (1994) Protein Sci. 3, 2358-2365
33. Morikami, K., Nakai, T., Kidera, A., Saito, M., and Nakamura, H. (1992) Comput. Chem. 16, 243-248
34. Weiner, S. J., Kollman, P. A., Nguyen, D. T., and Case, D. (1986) J. Comput. Chem. 7, 230-252
35. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
36. Lee, C., Etchegaray, J. P., Cagampang, F. R., Loudon, A. S., and Reppert, S. M. (2001) Cell 107, 855-867
37. Gorlich, D., and Kutay, U. (1999) Annu. Rev. Cell Dev. Biol. 15, 607-660
38. Lin, F. J., Song, W., Meyer-Bernstein, E., Naidoo, N., and Sehgal, A. (2001) Mol. Cell. Biol. 21, 7287-7294
39. Park, H. W., Kim, S. T., Sancar, A., and Deisenhofer, J. (1995) Science 268, 1866-1872
40. Tamada, T., Kitadokoro, K., Higuchi, Y., Inaka, K., Yasui, A., de Ruiter, P. E., Eker, A. P., and Miki, K. (1997) Nat. Struct. Biol. 4, 887-891
41. Komori, H., Masui, R., Kuramitsu, S., Yokoyama, S., Shibata, T., Inoue, Y., and Miki, K. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 13560-13565
42. Brudler, R., Hitomi, K., Daiyasu, H., Toh, H., Kucho, K., Ishiura, M., Kanehisa, M., Roberts, V. A., Todo, T., Tainer, J. A., and Getzoff, E. D. (2003) Mol. Cell 11, 59-67