-
1
-
-
77957016095
-
Lysine biosynthesis (yeast)
-
Broquist H.P. Lysine biosynthesis (yeast). Methods Enzymol. 17:1971;112-129.
-
(1971)
Methods Enzymol.
, vol.17
, pp. 112-129
-
-
Broquist, H.P.1
-
2
-
-
0028340817
-
Biology of L-lysine overproduction by Corynebacterium glutamicum
-
Eggeling L. Biology of L-lysine overproduction by Corynebacterium glutamicum. Amino Acids. 6:1994;261-272.
-
(1994)
Amino Acids
, vol.6
, pp. 261-272
-
-
Eggeling, L.1
-
3
-
-
0032466343
-
Lysine is synthesized through the α-aminoadipate pathway in Thermus thermophilus
-
Kosuge T., Hoshino T. Lysine is synthesized through the α-aminoadipate pathway in Thermus thermophilus. FEMS Microbiol. Letters. 169:1998;361-367.
-
(1998)
FEMS Microbiol. Letters
, vol.169
, pp. 361-367
-
-
Kosuge, T.1
Hoshino, T.2
-
4
-
-
0032989249
-
Aspartate kinase-independent lysine synthesis in an extremely thermophilic bacterium, Thermus thermophilus: Lysine is synthesized via α-aminoadipic acid not via diaminopimelic acid
-
Kobashi N., Nishiyama M., Tanokura M. Aspartate kinase-independent lysine synthesis in an extremely thermophilic bacterium, Thermus thermophilus: lysine is synthesized via α-aminoadipic acid not via diaminopimelic acid. J. Bacteriol. 181:1999;1713-1718.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 1713-1718
-
-
Kobashi, N.1
Nishiyama, M.2
Tanokura, M.3
-
5
-
-
0000966280
-
Distribution of lysine pathways among fungi: Evolutionary implications
-
Vogel H.J. Distribution of lysine pathways among fungi: evolutionary implications. Am. Natl. 98:1964;446-455.
-
(1964)
Am. Natl
, vol.98
, pp. 446-455
-
-
Vogel, H.J.1
-
6
-
-
0031960184
-
A unique fungal lysine biosynthesis enzyme shares a common ancestor with tricarboxylic acid cycle and leucine biosynthetic enzymes found in diverse organisms
-
Irvin S.D., Bhattacharjee J.K. A unique fungal lysine biosynthesis enzyme shares a common ancestor with tricarboxylic acid cycle and leucine biosynthetic enzymes found in diverse organisms. J. Mol. Evol. 46:1998;401-408.
-
(1998)
J. Mol. Evol.
, vol.46
, pp. 401-408
-
-
Irvin, S.D.1
Bhattacharjee, J.K.2
-
7
-
-
0033404080
-
A prokaryotic gene cluster involved in synthesis of lysine through the amino adipate pathway: A key to the evolution of amino acid biosynthesis
-
Nishida H., Nishiyama M., Kobashi N., Kosuge T., Hoshino T., Yamane H. A prokaryotic gene cluster involved in synthesis of lysine through the amino adipate pathway: a key to the evolution of amino acid biosynthesis. Genome Res. 9:1999;1175-1183.
-
(1999)
Genome Res.
, vol.9
, pp. 1175-1183
-
-
Nishida, H.1
Nishiyama, M.2
Kobashi, N.3
Kosuge, T.4
Hoshino, T.5
Yamane, H.6
-
8
-
-
0034891272
-
Functional and evolutionary relationship between arginine biosynthesis and prokaryotic lysine biosynthesis through alpha-aminoadipate
-
Miyazaki J., Kobashi N., Nishiyama M., Yamane H. Functional and evolutionary relationship between arginine biosynthesis and prokaryotic lysine biosynthesis through alpha-aminoadipate. J. Bacteriol. 183:2001;5067-5073.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 5067-5073
-
-
Miyazaki, J.1
Kobashi, N.2
Nishiyama, M.3
Yamane, H.4
-
9
-
-
0037070156
-
Characterization of a lysK gene as an argE homolog in Thermus thermophilus HB27
-
Miyazaki J., Kobashi N., Fujii T., Nishiyama M., Yamane H. Characterization of a lysK gene as an argE homolog in Thermus thermophilus HB27. FEBS Letters. 512:2002;269-274.
-
(2002)
FEBS Letters
, vol.512
, pp. 269-274
-
-
Miyazaki, J.1
Kobashi, N.2
Fujii, T.3
Nishiyama, M.4
Yamane, H.5
-
10
-
-
0031467818
-
A diverse superfamily of enzymes with ATP-dependent carboxylate-amine/thiol ligase activity
-
Galperin M.Y., Koonin E.V. A diverse superfamily of enzymes with ATP-dependent carboxylate-amine/thiol ligase activity. Protein Sci. 6:1997;2639-2643.
-
(1997)
Protein Sci.
, vol.6
, pp. 2639-2643
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
11
-
-
0027440362
-
Protein structure comparison by alignment or distance matrices
-
Holm L., Sander C. Protein structure comparison by alignment or distance matrices. J. Mol. Biol. 233:1993;123-138.
-
(1993)
J. Mol. Biol.
, vol.233
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
12
-
-
0029950031
-
Structural classification of proteins: New superfamilies
-
Murzin A.G. Structural classification of proteins: new superfamilies. Curr. Opin. Struct. Biol. 6:1996;386-394.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 386-394
-
-
Murzin, A.G.1
-
13
-
-
0028151598
-
Vancomycin resistance: Structure of D-alanine:D-alanine ligase at 2.3 Å resolution
-
Fan C., Moews P.C., Walsh C.T., Knox J.R. Vancomycin resistance: structure of D-alanine:D-alanine ligase at 2.3 Å resolution. Science. 266:1994;439-443.
-
(1994)
Science
, vol.266
, pp. 439-443
-
-
Fan, C.1
Moews, P.C.2
Walsh, C.T.3
Knox, J.R.4
-
14
-
-
0034254211
-
Molecular structure of Escherichia coli PurT-encoded glycinamide ribonucleotide transformylase
-
Thoden J.B., Firestine S., Nixon A., Benkovic S.J., Holden H.M. Molecular structure of Escherichia coli PurT-encoded glycinamide ribonucleotide transformylase. Biochemistry. 39:2000;8791-8802.
-
(2000)
Biochemistry
, vol.39
, pp. 8791-8802
-
-
Thoden, J.B.1
Firestine, S.2
Nixon, A.3
Benkovic, S.J.4
Holden, H.M.5
-
15
-
-
0027530140
-
Three-dimensional structure of the glutathione synthetase from Escherichia coli B at 2.0 Å resolution
-
Yamaguchi H., Kato H., Hata Y., Nishioka T., Kimura A., Oda J., Katsube Y. Three-dimensional structure of the glutathione synthetase from Escherichia coli B at 2.0 Å resolution. J. Mol. Biol. 229:1993;1083-1100.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 1083-1100
-
-
Yamaguchi, H.1
Kato, H.2
Hata, Y.3
Nishioka, T.4
Kimura, A.5
Oda, J.6
Katsube, Y.7
-
16
-
-
0029787639
-
A pseudo-Michaelis quaternary complex in the reverse reaction of a ligase: Structure of Escherichia coli B glutathione synthetase complexed with ADP, glutathione, and sulfate at 2.0 Å resolution
-
Hara T., Kato H., Katsube Y., Oda J. A pseudo-Michaelis quaternary complex in the reverse reaction of a ligase: structure of Escherichia coli B glutathione synthetase complexed with ADP, glutathione, and sulfate at 2.0 Å resolution. Biochemistry. 35:1996;11967-11974.
-
(1996)
Biochemistry
, vol.35
, pp. 11967-11974
-
-
Hara, T.1
Kato, H.2
Katsube, Y.3
Oda, J.4
-
17
-
-
0032481344
-
Synapsin I is structurally similar to ATP-utilizing enzymes
-
Esser L., Wang C.R., Hosaka M., Smagula C.S., Sudhof T.C., Deisenhofer J. Synapsin I is structurally similar to ATP-utilizing enzymes. EMBO J. 17:1998;977-984.
-
(1998)
EMBO J.
, vol.17
, pp. 977-984
-
-
Esser, L.1
Wang, C.R.2
Hosaka, M.3
Smagula, C.S.4
Sudhof, T.C.5
Deisenhofer, J.6
-
18
-
-
0033534173
-
The small subunit of carbamoyl phosphate synthetase: Snapshots along the reaction pathway
-
Thoden J.B., Huang X., Raushel F.M., Holden H.M. The small subunit of carbamoyl phosphate synthetase: snapshots along the reaction pathway. Biochemistry. 38:1999;16158-16166.
-
(1999)
Biochemistry
, vol.38
, pp. 16158-16166
-
-
Thoden, J.B.1
Huang, X.2
Raushel, F.M.3
Holden, H.M.4
-
19
-
-
0033598666
-
Three-dimensional structure of N5-carboxyaminoimidazole ribonucleotide synthetase: A member of the ATP grasp protein superfamily
-
Thoden J.B., Kappock T.J., Stubbe J., Holden H.M. Three-dimensional structure of N5-carboxyaminoimidazole ribonucleotide synthetase: a member of the ATP grasp protein superfamily. Biochemistry. 38:1999;15480-15492.
-
(1999)
Biochemistry
, vol.38
, pp. 15480-15492
-
-
Thoden, J.B.1
Kappock, T.J.2
Stubbe, J.3
Holden, H.M.4
-
20
-
-
0028085434
-
Three-dimensional structure of the biotin carboxylase subunit of acetyl-CoA carboxylase
-
Waldrop G.L., Rayment I., Holden H.M. Three-dimensional structure of the biotin carboxylase subunit of acetyl-CoA carboxylase. Biochemistry. 33:1994;10249-10256.
-
(1994)
Biochemistry
, vol.33
, pp. 10249-10256
-
-
Waldrop, G.L.1
Rayment, I.2
Holden, H.M.3
-
21
-
-
0032506054
-
X-ray crystal structure of glycinamide ribonucleotide synthetase from Escherichia coli
-
Wang W., Kappock T.J., Stubbe J., Ealick S.E. X-ray crystal structure of glycinamide ribonucleotide synthetase from Escherichia coli. Biochemistry. 37:1998;15647-15662.
-
(1998)
Biochemistry
, vol.37
, pp. 15647-15662
-
-
Wang, W.1
Kappock, T.J.2
Stubbe, J.3
Ealick, S.E.4
-
22
-
-
0033614003
-
A detailed structural description of Escherichia coli succinyl-CoA synthetase
-
Fraser M.E., James M.N., Bridger W.A., Wolodko W.T. A detailed structural description of Escherichia coli succinyl-CoA synthetase. J. Mol. Biol. 29:1999;1633-1653.
-
(1999)
J. Mol. Biol.
, vol.29
, pp. 1633-1653
-
-
Fraser, M.E.1
James, M.N.2
Bridger, W.A.3
Wolodko, W.T.4
-
23
-
-
0030841589
-
Detecting folding motifs and similarities in protein structures
-
Kleywegt G.J., Jones T.A. Detecting folding motifs and similarities in protein structures. Methods Enzymol. 277:1997;525-545.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 525-545
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
25
-
-
0037189553
-
PurT-encoded glycinamide ribonucleotide transformylase. Accommodation of adenosine nucleotide analogs within the active site
-
Thoden J.B., Firestine S.M., Benkovic S.J., Holden H.M. PurT-encoded glycinamide ribonucleotide transformylase. Accommodation of adenosine nucleotide analogs within the active site. J. Biol. Chem. 28:2002;23898-23908.
-
(2002)
J. Biol. Chem.
, vol.28
, pp. 23898-23908
-
-
Thoden, J.B.1
Firestine, S.M.2
Benkovic, S.J.3
Holden, H.M.4
-
26
-
-
0034717247
-
Movement of the biotin carboxylase B-domain as a result of ATP binding
-
Thoden J.B., Blanchard C.Z., Holden H.M., Waldrop G.L. Movement of the biotin carboxylase B-domain as a result of ATP binding. J. Biol. Chem. 21:2000;16183-16190.
-
(2000)
J. Biol. Chem.
, vol.21
, pp. 16183-16190
-
-
Thoden, J.B.1
Blanchard, C.Z.2
Holden, H.M.3
Waldrop, G.L.4
-
27
-
-
85031071528
-
-
Accepted for publication.
-
Vassylyeva, M. N., Sakai, H., Matsuura, T., Sekine, S., Nishiyama, M., Terada, T. et al. (2003). Cloning, expression, purification, crystallization and initial crystallographic analysis of lysine biosynthesis LysX protein from Thermus thermophilus HB8. Accepted for publication.
-
(2003)
Cloning, expression, purification, crystallization and initial crystallographic analysis of lysine biosynthesis LysX protein from Thermus thermophilus HB8
-
-
Vassylyeva, M.N.1
Sakai, H.2
Matsuura, T.3
Sekine, S.4
Nishiyama, M.5
Terada, T.6
-
28
-
-
0024674214
-
Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12
-
Kang W.K., Icho T., Isono S., Kitakawa M., Isono K. Characterization of the gene rimK responsible for the addition of glutamic acid residues to the C-terminus of ribosomal protein S6 in Escherichia coli K12. Mol. Gen. Genet. 217:1989;281-288.
-
(1989)
Mol. Gen. Genet.
, vol.217
, pp. 281-288
-
-
Kang, W.K.1
Icho, T.2
Isono, S.3
Kitakawa, M.4
Isono, K.5
-
29
-
-
0028203301
-
Crystal structure of the ribosomal protein S6 from Thermus thermophilus
-
Lindahl M., Svensson L.A., Liljas A., Sedelnikova S.E., Eliseikina I.A., Fomenkova N.P., et al. Crystal structure of the ribosomal protein S6 from Thermus thermophilus. EMBO J. 13:1994;1249-1254.
-
(1994)
EMBO J.
, vol.13
, pp. 1249-1254
-
-
Lindahl, M.1
Svensson, L.A.2
Liljas, A.3
Sedelnikova, S.E.4
Eliseikina, I.A.5
Fomenkova, N.P.6
-
30
-
-
0031407215
-
Molecular cloning and sequence analysis of the lysR gene from the extremely thermophilic eubacterium, Thermus thermophilus HB27
-
Kosuge T., Hoshino T. Molecular cloning and sequence analysis of the lysR gene from the extremely thermophilic eubacterium, Thermus thermophilus HB27. FEMS Microbiol. Letters. 157:1997;73-79.
-
(1997)
FEMS Microbiol. Letters
, vol.157
, pp. 73-79
-
-
Kosuge, T.1
Hoshino, T.2
-
31
-
-
0035928176
-
The RIKEN structural biology beamline II (BL44B2) at the SPring-8
-
Adachi S., Oguchi T., Tanida H., Park S.Y., Shimizu H., Miyatake H., et al. The RIKEN structural biology beamline II (BL44B2) at the SPring-8. Nucl. Instrum. Methods. A467-468:2001;711-714.
-
(2001)
Nucl. Instrum. Methods
, vol.A467-468
, pp. 711-714
-
-
Adachi, S.1
Oguchi, T.2
Tanida, H.3
Park, S.Y.4
Shimizu, H.5
Miyatake, H.6
-
33
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
The CCP4 suite: programs for protein crystallography. Acta Crystallog. sect. D. 50:1994;760-763.
-
(1994)
Acta Crystallog. sect. D
, vol.50
, pp. 760-763
-
-
-
34
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1997;307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
35
-
-
0036848846
-
Automated structure solution, density modification and model building
-
Terwilliger T.C. Automated structure solution, density modification and model building. Acta Crystallog. sect. D. 58:2002;1937-1940.
-
(2002)
Acta Crystallog. sect. D
, vol.58
, pp. 1937-1940
-
-
Terwilliger, T.C.1
-
36
-
-
0002583957
-
Dm: An automated procedure for phase improvement by density modification
-
Cowtan K. dm: an automated procedure for phase improvement by density modification. CCP4/ESF-EACBM Newsletter Protein Crystallog. 31:1994;34-38.
-
(1994)
CCP4/ESF-EACBM Newsletter Protein Crystallog.
, vol.31
, pp. 34-38
-
-
Cowtan, K.1
-
37
-
-
84889120137
-
Improved methods for building protein models in electron density maps and location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard M. Improved methods for building protein models in electron density maps and location of errors in these models. Acta Crystallog. sect. A. 47:1991;110-119.
-
(1991)
Acta Crystallog. sect. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
38
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brünger A.T., Adams P.D., Clore G.M., Delano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallog. sect. D. 54:1998;905-921.
-
(1998)
Acta Crystallog. sect. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
-
40
-
-
0026244229
-
Molscript: A program to produce both detailed and schematic plots of protein structures
-
Kraulis P.J. Molscript: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24:1991;946-950.
-
(1991)
J. Appl. Crystallog.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
41
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merritt E.A., Bacon D.J. Raster3D: photorealistic molecular graphics. Methods Enzymol. 277:1997;505-524.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
-
42
-
-
0034503620
-
CONSCRIPT: A program for generating electron density isosurfaces for presentation in protein crystallography
-
Lawrence M.C., Bourke B. CONSCRIPT: a program for generating electron density isosurfaces for presentation in protein crystallography. J. Appl. Crystallog. 33:2000;990-991.
-
(2000)
J. Appl. Crystallog.
, vol.33
, pp. 990-991
-
-
Lawrence, M.C.1
Bourke, B.2
-
43
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov I.N., Bourne P.E. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng. 9:1998;739-747.
-
(1998)
Protein Eng.
, vol.9
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
44
-
-
0001351894
-
Rapid attainment of sedimentaion equilibrium
-
Van Holde K.E., Baldwin R.L. Rapid attainment of sedimentaion equilibrium. J. Phys. Chem. 62:1958;734-743.
-
(1958)
J. Phys. Chem.
, vol.62
, pp. 734-743
-
-
Van Holde, K.E.1
Baldwin, R.L.2
-
45
-
-
0027968068
-
CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:1994;4673-4680.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
46
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsh W., Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 12:1983;2577-2637.
-
(1983)
Biopolymers
, vol.12
, pp. 2577-2637
-
-
Kabsh, W.1
Sander, C.2
-
47
-
-
0032961270
-
ESPript: Analysis of multiple sequence alignments in PostScript
-
Gouet P., Courcelle E., Stuart D.I., Metoz F. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics. 15:1999;305-308.
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
-
48
-
-
0026319199
-
Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
-
Nicholls A., Sharp K.A., Honig B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins: Struct. Funct. Genet. 11:1991;281-296.
-
(1991)
Proteins: Struct. Funct. Genet.
, vol.11
, pp. 281-296
-
-
Nicholls, A.1
Sharp, K.A.2
Honig, B.3
|