Three-dimensional structure of N5-carboxyaminoimidazole ribonucleotide synthetase: A member of the ATP grasp protein superfamily

Biochemistry

Volumn 38, Issue 47, 1999, Pages 15480-15492

  Thoden, James B ^b   Kappock, T Joseph ^a   Stubbe, JoAnne ^a   Holden, Hazel M ^b  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; SYNTHETASE; ADENOSINE TRIPHOSPHATASE; BACTERIAL PROTEIN; CARBOXY PHOSPHATE; CARBOXYAMINOIMIDAZOLE RIBOTIDE; CARBOXYLYASE; ESCHERICHIA COLI PROTEIN; LIGAND; MEMBRANE PROTEIN; ORGANOPHOSPHORUS COMPOUND; PEPTIDE FRAGMENT; PHOSPHATE; PURK PROTEIN, E COLI; RIBONUCLEOTIDE;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; ENZYME ANALYSIS; ENZYME STRUCTURE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; STRUCTURE ANALYSIS; AMINO ACID SEQUENCE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; DIMERIZATION; ENZYMOLOGY; GOLGI COMPLEX; METABOLISM; MOLECULAR GENETICS; PROTEIN QUATERNARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; SEQUENCE HOMOLOGY; X RAY CRYSTALLOGRAPHY;

ADENOSINE TRIPHOSPHATASES; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BINDING SITES; CARBOXY-LYASES; COMPUTER SIMULATION; CRYSTALLOGRAPHY, X-RAY; DIMERIZATION; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GOLGI APPARATUS; LIGANDS; MEMBRANE PROTEINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; ORGANOPHOSPHORUS COMPOUNDS; PEPTIDE FRAGMENTS; PHOSPHATES; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; RIBONUCLEOTIDES; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0033598666     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991618s     Document Type: Article

References (52)

1. Buchanan, J. M., and Hartman, S. C. (1959) Adv. Enzymol. Relat. Areas Mol. Biol. 39, 91-183.
2. Firestine, S. M., Poon, S.-W., Mueller, E. J., Stubbe, J., and Davisson, V. J. (1994) Biochemistry 33, 11927-11934.
3. Meyer, E., Leonard, N. J., Bhat, B., Stubbe, J., and Smith, J. M. (1992) Biochemistry 31, 5022-5032.
4. Mueller, E. J., Meyer, E., Rudolph, J., Davisson, V. J., and Stubbe, J. (1994) Biochemistry 33, 2269-2278.
5. Meyer, E., Kappock, T. J., Osuji, C., and Stubbe, J. (1999) Biochemistry 38, 3012-3018.
6. Mathews, I. I., Kappock, T. J., Stubbe, J., and Ealick, S. E. (1999) Structure (in press).
7. Polakis, S. E., Guchhait, R. B., Zwergel, E. E., Lane, M. D., and Cooper, T. G. (1974) J. Biol. Chem. 249, 6657-6667.
8. Climent, I., and Rubio, V. (1986) Arch. Biochem. Biophys. 251, 465-470.
9. Ogita, T., and Knowles, J. R. (1988) Biochemistry 27, 8028-8033.
10. Anderson, P. M., and Meister, A. (1965) Biochemistry 4, 2803-2809.
11. Raushel, F. R., and Villafranca, J. V. (1979) Biochemistry 18, 3424-3429.
12. Raushel, F. M., and Villafranca, J. V. (1980) Biochemistry 19, 3170-3174.
13. Waldrop, G. L., Rayment, I., and Holden, H. M. (1994) Biochemistry 33, 10249-10256.
14. Thoden, J. B., Holden, H. M., Wesenberg, G., Raushel, F. M., and Rayment, I. (1997) Biochemistry 36, 6305-6316.
15. Thoden, J. B., Raushel, F. M., Benning, M. M., Rayment, I., and Holden, H. M. (1999) Acta Crystallogr. D 55, 8-24.
16. Thoden, J. B., Wesenberg, G., Raushel, F. M., and Holden, H. M. (1999) Biochemistry 38, 2347-2357.
17. Galperin, M. Y., and Koonin, E. V. (1997) Protein Sci. 6, 2639-2643.
18. Wolodko, W. T., Fraser, M. E., James, M. N. G., and Bridger, W. A. (1994) J. Biol. Chem. 269, 10883-10890.
19. Herzberg, O., Chen, C. C., Kapadia, G., McGuire, M., Carroll, L. J., Noh, S. J., and Dunaway-Mariano, D. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 2652-2657.
20. Fan, C., Moews, P. C., Walsh, C. T., and Knox, J. R. (1994) Science 266, 439-443.
21. Yamaguchi, H., Kato, H., Hata, Y., Nishioka, T., Kimura, A., Oda, J., and Katsube, Y. (1993) J. Mol. Biol. 229, 1083-1100.
22. Wang, W., Kappock, T. J., Stubbe, J., and Ealick, S. E. (1998) Biochemistry 37, 15647-15662.
23. Almassy, R. J., Janson, C. A., Kan, C. C., and Hostomska, Z. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 6114-6118.
24. Yount, R. G., Babcock, D., Ballantyne, W., and Ojala, D. (1971) Biochemistry 10, 2484-2489.
25. Kabsch, W. (1988) J. Appl. Crystallogr. 21, 67-71.
26. Kabsch, W. (1988) J. Appl. Crystallogr. 21, 916-924.
27. Terwilliger, T. C., and Eisenberg, D. (1983) Acta Crystallogr. A 39, 813-817.
28. Rossmann, M. G. (1960) Acta Crystallogr. 13, 221-226.
29. Wang, B. C. (1985) Methods Enzymol. 115, 90-112.
30. Tiedeman, A. A., Keyhani, J., Kamholz, J., Daum, H. A., 3d, Gots, J. S., and Smith, J. M. (1989) J. Bacteriol. 171, 205-212.
31. Watanabe, W., Sampei, G., Aiba, A., and Mizobuchi, K. (1989) J. Bacteriol. 171, 198-204.
32. Tronrud, D. E., Ten Eyck, L. F., and Matthews, B. W. (1987) Acta Crystallogr. A 43, 489-501.
33. Navaza, J. (1994) Acta Crystallogr. A 50, 157-163.
34. Bricogne, G. (1976) Acta Crystallogr. A 32, 832-847.
35. Kabsch, W., and Sander, C. (1983) Biopolymers 22, 832-847.
36. Holm, L., and Sander, C. (1996) Science 273, 595-602.
37. Krahn, J. M., Kim, J. H., Burns, M. R., Parry, R. J., Zalkin, H., and Smith, J. L. (1997) Biochemistry 36, 11061-11068.
38. Hara, T., Kato, H., Katsube, Y., and Oda, J. I. (1996) Biochemistry 35, 11967-11974.
39. Esser, L., Wang, C. R., Hosaka, M., Smagula, C. S., Sudhof, T. C., and Deisenhofer, J. (1998) EMBO J. 17, 977-984.
40. Lee, B., and Richards, F. M. (1971) J. Mol. Biol. 55, 379-400.
41. Cheng, Y.-S., Rudolph, J., Stern, M., Stubbe, J., Flannigan, K. A., and Smith, J. M. (1990) Biochemistry 29, 218-227.
42. Marolewski, A., Smith, J. M., and Benkovic, S. J. (1994) Biochemistry 33, 2531-2537.
43. Thoden, J. B., Miran, S. G., Phillips, J. C., Howard, A. J., Raushel, F. M., and Holden, H. M. (1998) Biochemistry 37, 8825-8831.
44. Polekhina, G., Board, P. G., Gali, R. R., Rossjohn, J., and Parker, M. W. (1999) EMBO J. 18, 3204-3213.
45. Sauers, C. K., Jencks, W. P., and Groh, S. (1975) J. Am. Chem. Soc. 97, 5546-5553.
46. Knowles, J. R. (1989) Annu. Rev. Biochem. 58, 195-221.
47. Gibson, G. E., Mullins, L. S., and Raushel, F. M. (1998) Bioorg. Chem. 26, 255-268.
48. Hiratake, J., Kato, H., and Oda, J. (1994) J. Am. Chem. Soc. 116, 12059-12060.
49. Marolewski, A. E., Mattia, K. M., Warren, M. S., and Benkovic, S. J. (1997) Biochemistry 36, 6709-6716.
50. Nicholls, A., Sharp, K., and Honig, B. (1991) Proteins: Struct., Funct. Genet. 11, 281-296.
51. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
52. Merritt, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-524.