-
1
-
-
0033563471
-
Applications of the pyramidal clustering method to biological objects
-
Aude J.-C., Diaz-Lazcoz Y., Codani J.-J., Risler J.L. Applications of the pyramidal clustering method to biological objects. Comput. Chem. 23:(3-4):1999;303-315.
-
(1999)
Comput. Chem.
, vol.23
, Issue.3-4
, pp. 303-315
-
-
Aude, J.-C.1
Diaz-Lazcoz, Y.2
Codani, J.-J.3
Risler, J.L.4
-
2
-
-
0033384634
-
An automated comparative analysis of 17 complete microbial genomes
-
Bansal A. An automated comparative analysis of 17 complete microbial genomes. Bioinformatics. 15:(11):1999;900-908.
-
(1999)
Bioinformatics
, vol.15
, Issue.11
, pp. 900-908
-
-
Bansal, A.1
-
3
-
-
0035394646
-
Ribosomal protein gene cluster analysis in eubacterium genomics: Homology between Sinorhizobium meliloti strain 1021 and Bacillus subtilis
-
Barloy-Hubler F., Lelaure V., Galibert F. Ribosomal protein gene cluster analysis in eubacterium genomics: homology between Sinorhizobium meliloti strain 1021 and Bacillus subtilis. Nucl. Acids Res. 29:(13):2001;2747-2756.
-
(2001)
Nucl. Acids Res.
, vol.29
, Issue.13
, pp. 2747-2756
-
-
Barloy-Hubler, F.1
Lelaure, V.2
Galibert, F.3
-
5
-
-
0033563350
-
Significance of Z-Value statistics of Smith-Waterman scores for protein alignements
-
Comet J.-P., Aude J.-C., Glémet E., Risler J.-L., Hénaut A., Slonimski P.P., Codani J.-J. Significance of Z-Value statistics of Smith-Waterman scores for protein alignements. Comput. Chem. 23:(3-4):1999;317-331.
-
(1999)
Comput. Chem.
, vol.23
, Issue.3-4
, pp. 317-331
-
-
Comet, J.-P.1
Aude, J.-C.2
Glémet, E.3
Risler, J.-L.4
Hénaut, A.5
Slonimski, P.P.6
Codani, J.-J.7
-
6
-
-
0032568375
-
The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
-
6674
-
Deckert G., Warrenand P.V., Gaasterland T., Young W.G., Lenox A., Graham D., Overbeek R., Snead M.A., Kellerand M., Aujay M., Huber R., Feldman R.A., Short J., Olsen G., Swanson R. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature. 26:(392 (6674)):1998;353-358.
-
(1998)
Nature
, vol.26
, Issue.392
, pp. 353-358
-
-
Deckert, G.1
Warrenand, P.V.2
Gaasterland, T.3
Young, W.G.4
Lenox, A.5
Graham, D.6
Overbeek, R.7
Snead, M.A.8
Kellerand, M.9
Aujay, M.10
Huber, R.11
Feldman, R.A.12
Short, J.13
Olsen, G.14
Swanson, R.15
-
7
-
-
0034668036
-
Automatic detection of conserved gene clusters in multiple genomes by graph comparison and p-quasi grouping
-
Fujibuchi W., Ogata H., Matsuda H., Kanehisa M. Automatic detection of conserved gene clusters in multiple genomes by graph comparison and p-quasi grouping. Nucleic Acids Res. 28:(20):2000;4029-4036.
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.20
, pp. 4029-4036
-
-
Fujibuchi, W.1
Ogata, H.2
Matsuda, H.3
Kanehisa, M.4
-
8
-
-
0032561403
-
Plant comparative genetics after 10 years
-
5389
-
Gale M.D., Devos K.M. Plant comparative genetics after 10 years. Science. 23:(282 (5389)):1998;656-659.
-
(1998)
Science
, vol.23
, Issue.282
, pp. 656-659
-
-
Gale, M.D.1
Devos, K.M.2
-
9
-
-
0030929643
-
LASSAP, a Large Scale Sequence Comparison Package
-
Glemet E., Codani J.-J. LASSAP, a Large Scale Sequence Comparison Package. CABIOS. 13:1997;137-143.
-
(1997)
CABIOS
, vol.13
, pp. 137-143
-
-
Glemet, E.1
Codani, J.-J.2
-
10
-
-
84959048279
-
Algorithms for finding gene clusters
-
No. 2149 in Lecture Notes in Computer Science, Berlin: Springer
-
Heber S., Stoye J. Algorithms for finding gene clusters. Workshop on Algorithms in Bioinformatics (WABI). No. 2149 in Lecture Notes in Computer Science. 2001;252-263 Springer, Berlin.
-
(2001)
Workshop on Algorithms in Bioinformatics (WABI)
, pp. 252-263
-
-
Heber, S.1
Stoye, J.2
-
11
-
-
84956972433
-
Finding all common intervals of k permutations
-
No. 2089 in Lecture Notes in Computer Science, Berlin: Springer
-
Heber S., Stoye J. Finding all common intervals of k permutations. Combinatorial Pattern Matching (CPM). No. 2089 in Lecture Notes in Computer Science. 2001;207-218 Springer, Berlin.
-
(2001)
Combinatorial Pattern Matching (CPM)
, pp. 207-218
-
-
Heber, S.1
Stoye, J.2
-
12
-
-
0036499057
-
SHOT: A web server for the construction of genome phylogenies
-
Korbel J.O., Snel B., Huynen M.A., Bork P. SHOT: a web server for the construction of genome phylogenies. Trends Genet. 18:(3):2002;158-162.
-
(2002)
Trends Genet.
, vol.18
, Issue.3
, pp. 158-162
-
-
Korbel, J.O.1
Snel, B.2
Huynen, M.A.3
Bork, P.4
-
13
-
-
0034667776
-
A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters
-
Ogata H., Fujibuchi W., Goto S., Kanehisa M. A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters. Nucl. Acids Res. 28:(20):2000;4021-4028.
-
(2000)
Nucl. Acids Res.
, vol.28
, Issue.20
, pp. 4021-4028
-
-
Ogata, H.1
Fujibuchi, W.2
Goto, S.3
Kanehisa, M.4
-
14
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek R., Fonstein M., D'Souza M., Pusch G.D., Maltsev N. The use of gene clusters to infer functional coupling. Proc. Natl. Acad. Sci. USA. 96:(6):1999;2896-2901.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, Issue.6
, pp. 2896-2901
-
-
Overbeek, R.1
Fonstein, M.2
D'souza, M.3
Pusch, G.D.4
Maltsev, N.5
-
15
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm M., Storm C.E., Sonnhammer E.L. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol. 314:(5):2001;1041-1052.
-
(2001)
J. Mol. Biol.
, vol.314
, Issue.5
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
16
-
-
0036772910
-
Short inversions and conserved gene clusters
-
Sankoff D. Short inversions and conserved gene clusters. Bioinformatics. 18:(10):2002;1305-1308.
-
(2002)
Bioinformatics
, vol.18
, Issue.10
, pp. 1305-1308
-
-
Sankoff, D.1
-
17
-
-
0026680446
-
Gene order comparisons for phylogenetic inference: Evolution of the mitochondrial genome
-
Sankoff D., Leduc G., Antoine N., Paquin B., Lang B.F., Cedergren R. Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome. Proc. Natl. Acad. Sci. USA. 89:(14):1992;6575-6579.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, Issue.14
, pp. 6575-6579
-
-
Sankoff, D.1
Leduc, G.2
Antoine, N.3
Paquin, B.4
Lang, B.F.5
Cedergren, R.6
-
18
-
-
0037197886
-
The identification of functional modules from the genomic association of genes
-
Snel B., Bork P., Huynen M.A. The identification of functional modules from the genomic association of genes. Proc. Natl. Acad. Sci. USA. 99:(9):2002;5890-5895.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.9
, pp. 5890-5895
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
19
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov R.L., Galperin M.Y., Natale D.A., Koonin E.V. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28:(1):2000;33-36.
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.1
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
20
-
-
1642392968
-
Fast algorithms to enumerate all common intervals of two permutations
-
Uno T., Yaghira M. Fast algorithms to enumerate all common intervals of two permutations. Algorithmica. 26:(2):2000;290-309.
-
(2000)
Algorithmica
, vol.26
, Issue.2
, pp. 290-309
-
-
Uno, T.1
Yaghira, M.2
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