메뉴 건너뛰기




Volumn 23, Issue 3-4, 1999, Pages 303-315

Applications of the pyramidal clustering method to biological objects

Author keywords

Classification; Hierarchical classification; Pyramidal classification

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE;

EID: 0033563471     PISSN: 00978485     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0097-8485(99)00006-6     Document Type: Article
Times cited : (20)

References (27)
  • 1
    • 0004179035 scopus 로고
    • A visual representation of the compatibility between an order and a dissimilarity index: The pyramids
    • Bertrand, P., Diday, E., 1985. A visual representation of the compatibility between an order and a dissimilarity index: the pyramids. Comput. Stat. Quart 2, 31-42.
    • (1985) Comput. Stat. Quart , vol.2 , pp. 31-42
    • Bertrand, P.1    Diday, E.2
  • 2
    • 33646379029 scopus 로고
    • Une généralisation des arbres hiérarchiques: Les représentations pyramidales
    • Bertrand, P., Diday, E., 1990. Une généralisation des arbres hiérarchiques: les représentations pyramidales. Rev. Stat. Appl 38, 53-78.
    • (1990) Rev. Stat. Appl , vol.38 , pp. 53-78
    • Bertrand, P.1    Diday, E.2
  • 3
    • 0007192980 scopus 로고
    • Orders and overlapping clusters by pyramids
    • De Leeuw, J. (Ed.), DSWO Press, Leiden
    • Diday, E., 1986. Orders and overlapping clusters by pyramids. In: De Leeuw, J. (Ed.), Multidimensional Data Analysis. DSWO Press, Leiden.
    • (1986) Multidimensional Data Analysis
    • Diday, E.1
  • 4
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet, F., 1988. Multiple sequence alignment with hierarchical clustering. Nucl. Acids Res 16, 10881-10890.
    • (1988) Nucl. Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 5
    • 0020649886 scopus 로고
    • Establishing homologies in protein sequences
    • Hirs, C.H.W., Timasheff, S.N. (Eds.), Academic Press, San Diego
    • Dayhoff, M.O., Barker, W.C., Hunt, L.T., 1983. Establishing homologies in protein sequences. In: Hirs, C.H.W., Timasheff, S.N. (Eds.), Methods in Enzymology, vol. 91. Academic Press, San Diego, pp. 524-545.
    • (1983) Methods in Enzymology , vol.91 , pp. 524-545
    • Dayhoff, M.O.1    Barker, W.C.2    Hunt, L.T.3
  • 6
    • 0023084055 scopus 로고
    • Progressive sequence alignment as a prerequisite to correct phylogenetic trees
    • Feng, D.F., Doolittle, R.F., 1987. Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J. Mol. Evol 25, 351-360.
    • (1987) J. Mol. Evol , vol.25 , pp. 351-360
    • Feng, D.F.1    Doolittle, R.F.2
  • 7
    • 0014211361 scopus 로고
    • Construction of phylogenetic trees
    • Fitch, W.M., Margoliash, E., 1967. Construction of phylogenetic trees. Science 155, 279-284.
    • (1967) Science , vol.155 , pp. 279-284
    • Fitch, W.M.1    Margoliash, E.2
  • 8
    • 0025764226 scopus 로고
    • Structure and evolution of a group of related aminoacyl-tRNA synthetases
    • Gatti, D.L., Tzagoloff, A., 1991. Structure and evolution of a group of related aminoacyl-tRNA synthetases. J. Mol. Biol 218, 557-568.
    • (1991) J. Mol. Biol , vol.218 , pp. 557-568
    • Gatti, D.L.1    Tzagoloff, A.2
  • 9
    • 0030929643 scopus 로고    scopus 로고
    • LASSAP, a large scale sequence comparison package
    • Glemet, E., Codani, J.J., 1997. LASSAP, a large scale sequence comparison package. Comput. Applic. Biosci 13, 137-143.
    • (1997) Comput. Applic. Biosci , vol.13 , pp. 137-143
    • Glemet, E.1    Codani, J.J.2
  • 10
    • 0031446550 scopus 로고    scopus 로고
    • XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences
    • Gouzy, J., Eugène, P., Green, E.A., Kahn, D., Corpet, F., 1997. XDOM, a graphical tool to analyse domain arrangements in any set of protein sequences. Comput. Applic. Biosci 13, 601-608.
    • (1997) Comput. Applic. Biosci , vol.13 , pp. 601-608
    • Gouzy, J.1    Eugène, P.2    Green, E.A.3    Kahn, D.4    Corpet, F.5
  • 11
    • 0027737969 scopus 로고
    • Origin and evolution of organelles genomes
    • Gray, M.W., 1993. Origin and evolution of organelles genomes. Curr. Opin. Genet. Dev 3, 884-890.
    • (1993) Curr. Opin. Genet. Dev , vol.3 , pp. 884-890
    • Gray, M.W.1
  • 12
    • 0029886749 scopus 로고    scopus 로고
    • Protein sequence comparison at genome scale
    • Doolittle, R.F. (Ed.), Academic Press, San Diego
    • Koonin, E.V., Tatusov, R.L., Rudd, K.E., 1996. Protein sequence comparison at genome scale. In: Doolittle, R.F. (Ed.), Methods in Enzymology, vol. 266. Academic Press, San Diego, pp. 295-322.
    • (1996) Methods in Enzymology , vol.266 , pp. 295-322
    • Koonin, E.V.1    Tatusov, R.L.2    Rudd, K.E.3
  • 13
    • 0003126317 scopus 로고
    • A general theory of classification strategies: 1 hierarchical systems, 2 clustering systems
    • Lance, G.N., Williams, W.T., 1967. A general theory of classification strategies: 1 hierarchical systems, 2 clustering systems. Comput. J 9, 373-380.
    • (1967) Comput. J , vol.9 , pp. 373-380
    • Lance, G.N.1    Williams, W.T.2
  • 14
    • 0021760111 scopus 로고
    • On the statistical significance of nucleic acid similarities
    • Lipman, D.J., Wilbur, W.J., Smith, T.F., Waterman, S., 1984. On the statistical significance of nucleic acid similarities. Nucl. Acids Res 12, 215-226.
    • (1984) Nucl. Acids Res , vol.12 , pp. 215-226
    • Lipman, D.J.1    Wilbur, W.J.2    Smith, T.F.3    Waterman, S.4
  • 16
    • 0029740284 scopus 로고    scopus 로고
    • Is something wrong with the tree of life?
    • Martin, W.F., 1996. Is something wrong with the tree of life? Bioessays 18, 523-527.
    • (1996) Bioessays , vol.18 , pp. 523-527
    • Martin, W.F.1
  • 17
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., Nei, M., 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol 4, 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 18
    • 0026100921 scopus 로고
    • A work-bench for multiple alignment construction and analysis
    • Schuler, G.D., Altschul, S.F., Lipman, D.J., 1991. A work-bench for multiple alignment construction and analysis. Proteins 9, 180-191.
    • (1991) Proteins , vol.9 , pp. 180-191
    • Schuler, G.D.1    Altschul, S.F.2    Lipman, D.J.3
  • 22
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • Hillis, D.M., Moritz, C., Mable, B.K. (Eds.), Sinauer Associates, Sunderland
    • Swofford, D.L., Olsen, G.J., Waddell, P.J., Hillis, D.M., 1996. Phylogenetic inference. In: Hillis, D.M., Moritz, C., Mable, B.K. (Eds.), Molecular Systematics, 2nd ed. Sinauer Associates, Sunderland, pp. 407-514.
    • (1996) Molecular Systematics, 2nd Ed. , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 23
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov, R.L., Koonin, E.V., Lipman, D.J., 1997. A genomic perspective on protein families. Science 278, 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 24
    • 0022591495 scopus 로고
    • The classification of amino acid conservation
    • Taylor, W.R., 1986. The classification of amino acid conservation. J. Theor. Biol 119, 205-218.
    • (1986) J. Theor. Biol , vol.119 , pp. 205-218
    • Taylor, W.R.1
  • 26
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., Gibson, T.J., 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res 22, 4673-4680.
    • (1994) Nucl. Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 27
    • 0029074668 scopus 로고
    • A comprehensive representation of extensive similarity linkage between large numbers of proteins
    • Watanabe, H., Otsuka, J., 1995. A comprehensive representation of extensive similarity linkage between large numbers of proteins. Comput. Applic. Biosci 11, 159-166.
    • (1995) Comput. Applic. Biosci , vol.11 , pp. 159-166
    • Watanabe, H.1    Otsuka, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.