Geometry of interaction of the histidine ring with other planar and basic residues

Journal of Proteome Research

Volumn 2, Issue 3, 2003, Pages 255-263

  Bhattacharyya, Rajasri ^a   Saha, Rudra Prasad ^a   Samanta, Uttamkumar ^a   Chakrabarti, Pinak ^a  

^a BOSE INSTITUTE   (India)

Author keywords

Aromatic aromatic interaction; Histadine; Hydrogen bonding; Interaction geometry; Metal binding; Structural motifs

Indexed keywords

ARGININE; AROMATIC COMPOUND; ASPARAGINE; ASPARTIC ACID; GLUTAMIC ACID; GLUTAMINE; HISTIDINE; METAL ION; PHENYLALANINE; TRYPTOPHAN; TYROSINE;

AMINO ACID SEQUENCE; ARTICLE; DATA BASE; HYDROGEN BOND; METAL BINDING; MOLECULAR INTERACTION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

AMINO ACID MOTIFS; AMINO ACIDS, AROMATIC; AMINO ACIDS, BASIC; HISTIDINE; HYDROGEN BONDING; LYSINE; NITROGEN; PROTEIN STRUCTURE, SECONDARY; PROTEINS;

EID: 0042028511     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr025584d     Document Type: Article

References (45)

1. Baker, E. N.; Hubbard, R. E. Prog. Biophys. Mol. Biol. 1984, 44, 97.
2. Ippolito, J. A.; Alexander, R. S.; Christianson, D. W. J. Mol. Biol. 1990, 215, 457.
3. Burley, S. K.; Petsko, G. A. Science 1985, 229, 23.
4. Singh, J.; Thornton, J. M. FEBS Lett. 1985, 191, 1.
5. Pal, D.; Chakrabarti, P. J. Biomol. Struct. Dynam. 2001, 19, 115.
6. Samanta, U.; Pal, D.; Chakrabarti, P. Proteins Struct. Funct. Genet. 2000, 38, 288.
7. Steiner, T.; Koellner, G. J. Mol. Biol. 2001, 305, 535.
8. Brandl, M.; Weiss, M. S.; Jabs, A.; Sühnel, J.; Hilgenfeld, R. J. Mol. Biol. 2001, 307, 357.
9. Burley, S. K.; Petsko, G. A. Adv. Prot. Chem. 1988, 39, 125.
10. Creighton, T. E. W. H.; Freeman and Company: New York,1993.
11. Chakrabarti, P.; Pal, D. Prog. Biophys. Mol. Biol. 2001, 76, 1.
12. Hunter, C. A.; Singh, J.; Thornton, J. M. J. Mol. Biol. 1991, 218, 837.
13. McGaughey, G. B.; Gagne, M.; Rappe, A. K. J. Biol. Chem. 1998, 273, 15458.
14. Brocchieri, L.; Karlin, S. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 9297.
15. Samanta, U.; Pal, D.; Chakrabarti, P. Acta Crystallogr. 1999, D55, 1421.
16. Singh, J.; Thornton, J. M. Atlas of Protein Side-Chain Interactions; Vols. I and II. Oxford, UK: IRL press, 1992.
17. Mitchell, J. B. O.; Laskowski, R. A.; Thornton, J. M. Proteins 1997, 29, 370.
18. Karlin, S.; Zuker, M.; Brocchieri, L. J. Mol. Biol. 1994, 239, 227.
19. Sawyer, L.; James, M. N. G. Nature 1982, 295, 79.
20. Flocco, M. M.; Mowbray, S. L. J. Mol. Biol. 1995, 254, 96.
21. Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. Nucleic Acids Res. 2000, 28, 235.
22. Hobohm, U.; Sander, C. Protein Sci. 1994, 3, 522.
23. Bhattacharyya, R.; Samanta, U.; Chakrabarti, P. Protein Engng. 2002, 15, 91.
24. Rao, C. R. Linear Statistical Inference and Its Applications; John Wiley: New York, 1973.
25. Word, J. M.; Lovell, S. C.; LaBean, T. H.; Taylor, H. C.; Zalis, M. E.; Presley, B. K.; Richardson, J. S.; Richardson, D. C. J. Mol. Biol. 1999, 285, 1711.
26. Kabsch, W.; Sander, C. Biopolymers 1983, 22, 2577.
27. Hubbard, S. ACCESS: A program for calculating accessibilities. Department of Biochemistry and Molecular Biology. University College of London; 1992.
28. Lee, B.; Richards, F. M. J. Mol. Biol. 1971, 55, 379.
29. Kraulis, P. J. J. Appl. Crystallogr. 1991, 24, 946.
30. McDonald, I. K.; Thornton, J. M. J. Mol. Biol. 1994, 238, 777.
31. Laskowski, R. A. J. Mol. Graph. 1995, 13, 323.
32. Wallace, A. C.; Laskowski, R. A.; Thornton, J. M. Protein Sci. 1996, 5, 1001.
33. Chakrabarti, P. Protein Eng. 1990, 4, 57.
34. Samanta, U.; Chakrabarti, P.; Chandrasekhar, J. J. Phys. Chem. A. 1998, 102, 8964.
35. Bork, P.; Koonin, E. V. Curr. Opin. Struct. Biol. 1996, 6, 366.
36. Bairoch, A. Nucleic. Acids Res. 1993, 21, 3097.
37. Bairoch, A.; Bucher, P.; Hofmann, K. Nucleic. Acids Res. 1997, 25, 217.
38. Nishio, M.; Hirota, M.; Umezawa, Y. The CH/π Interaction. Evidence, Nature, and Consequences; Wiley-VCH: New York, 1998.
39. Desiraju, G.; Steiner, T. The Weak Hydrogen Bond in Structural Chemistry and Biology; Oxford University Press: Oxford, 1999.
40. Chakrabarti, P.; Samanta, U. J. Mol. Biol. 1995, 251, 9.
41. Flocco, M. M.; Mowbray, S. L. J. Mol. Biol. 1994, 235, 709.
42. Mitchell, J. B. O.; Nandi, C. L.; McDonald, I. K.; Thornton, J. M.; Price. S. L. J. Mol. Biol. 1994, 239, 315.
43. Karlin, S.; Zhu, Z.-Y. Proc. Natl. Acad. Sci. USA 1996, 93, 8344.
44. Hellinga, H. W.; Richards, F. M. J. Mol. Biol. 1991, 222, 763.
45. Kleywegt, G. J. J. Mol. Biol. 1999, 285, 1887.