Molecular markers in plant genome analysis

Current Science

Volumn 77, Issue 2, 1999, Pages 230-240

  Joshi, Swati P ^a   Ranjekar, Prabhakar K ^a   Gupta, Vidya S ^a  

^a NATIONAL CHEMICAL LABORATORY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0041850229     PISSN: 00113891     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (145)

1. Weising, K., Nybom, H., Wolff, K. and Meyer, W., DNA Fingerprinting in Plants and Fungi (ed. Arbor, A.) CRC Press, Boca Raton, 1995, pp. 1-3.
2. Jeffrey, A. J., Wilson, V. and Thein, S. L., Nature, 1985, 314, 67-73.
3. Saiki, R. K., Scharf, S., Faloona, F., Mullis, K. B., Horn, G. T., Erlich, H. A. and Arnheim, N., Science, 1985, 230, 1350-1354.
4. Saiki, R. K., Gelfand, D. H., Stoffel, S., Scharf, S. J., Higuchi, R., Horn, G. T., Mullis, K. B. and Erlich, H. A., Nature, 1988, 239, 487-497.
5. Schlotterer, C. and Tautz, D., Nucleic Acids Res., 1992, 20, 211-215.
6. Southern, E. M., J. Mol. Biol., 1975, 98, 503-517.
7. Figdore, S. S., Kennard, W. C., Song, K. M., Slocum, M. K. and Osborn, T. C., Theor. Appl. Genet., 1988, 75, 833-840.
8. Liu, B.-H. and Knapp, S. J., J. Hered., 1990, 81, 407.
9. Miller, J. C. and Tanksley, S. D., Theor. Appl. Genet., 1990, 80, 437-448.
10. Landry, B. S. and Michelmore, R. W., An Agricultural Perspective (eds Bruening, G., Harada, J. and Hollaender, A.), Plenum, New York, 1987, pp. 134-157.
11. Botstein, B., White, R. L., Skolnick, M. and Davis, R. W., Am. J. Hum. Genet., 1980, 32, 314-331.
12. Winter and Kahl, World J. Microbiol. Biotechnol., 1995, 11, 438-448.
13. Hatada, I., Hayashizaki, Y., Hirotsune, S., Komatsubara, H. and Mukai, T., Proc. Natl. Acad. Sci. USA, 1991, 88, 9523-9527.
14. Hirotsune, S., Shibata, H., Okazaki, Y., Sugino, H., Imoto, H., Sasaki, N., Hirose, K., Okuizumi, H., Muramatsu, M., Plass, C., Chapman, C., Tamatsukuri, S., Miyamoto, C., Furuichi, Y. and Hayashizaki, Y., Biochem. Biophys. Res. Commun., 1993, 194, 1406-1412.
15. Kawase, M., Theor. Appl. Genet., 1994, 89, 861-864.
16. Bustos, A., Soler, C. and Jouve, N., Genome, 1999, 42, 129-138.
17. Hartl, L., Weiss, H., Stephan, U., Zeller, F. J. and Jahoor, A., Theor. Appl. Genet., 1993, 90, 601-606.
18. Oh, B. J., Frederiksen, R. A. and Magill, C. W., Phytopatho., 1994, 84, 830-833.
19. Gu, W. K., Waden, N. F., Yu, J. and Wallace, D. H., Theor. Appl. Genet., 1995, 91, 465-470.
20. Adams, M. D., Kelley, J. M., Gocayne, J. D., Dubrick, M., Polymeropoulos, M. H., Xiao, H., Merril, C. R., Wu, A., Olde, B., Moreno, R. F., Kerlavage, A. R., McCombie, W. R. and Venter, J. C., Science, 1991, 252, 1651-1656.
21. Sasaki, T., Rice Genome, Newsletter for Rice Genome analysis, 1994, 3/1, Tsukuba.
22. Cooke, R., et al., Plant J., 1996, 9, 101-124.
23. Orita, M., Suzuki, Y., Sekiya, T. and Hayashi, K., Genomics, 1989, 5, 874-877.
24. Ainsworth, P. J., Surh, L. C. and Coulter-Mackie, M. B., Nucleic Acids Res., 1991, 19, 405-406.
25. Fukuoka, S., Inoue, T., Miyao, A., Monna, L., Zhong, M. S., Sasaki, T. and Minobe, Y., DNA Res., 1994, 1, 271-277.
26. Litt, M. and Luty, J. A., Am. J. Hum. Genet., 1989, 44, 397-401.
27. Nakamura, Y., Julier, C., Wolff, R., Holm, T., O'Connell, P., Leppert, M. and White, R., Nucleic Acids Res., 1987, 15, 2537-2547.
28. Weber, J. L. and May, P. E., Am. J. Hum. Genet., 1989, 44, 388-396.
29. Hearne, C. M., Ghosh, S. and Todd, J. A., Trends Genet., 1992, 8, 288-294.
30. Rafalski, J. A. and Tingey, S. V., Trends Genet., 1993, 9, 275-280.
31. Yang, G. P., Saghai Maroof, M. A., Xu, C. G., Zhang, Q. and Biyashev, R. M., Mol. Gen. Genet., 1994, 245, 187-194.
32. Heath, D. D., Iwama, G. K. and Devlin, R. H., Nucleic Acids Res., 1993, 21, 5782-5785.
33. Somers, D. J., Zhou, Z., Bebeli, P. and Gustafson, J. P., Theor. Appl. Genet., 1996, 93, 983-989.
34. Zietkiewicz, E., Rafalski, A. and Labuda, D., Genomics, 1994, 20, 176-183.
35. Nelson, D. L. and Caskey, C. T., PCR Technology: Principles and Application for DNA Amplification (ed. Erlich, H. A.), Stockton, New York, 1990, pp. 113-118.
36. Weining, S. and Langridge, P., Theor. Appl. Genet., 1991, 82, 209-216.
37. Welsh, J. and McCelland, M., Nucleic Acids Res., 1990, 18, 7213-7218.
38. Kolchinsky, A., Kolesnikova, M. and Ananiev, E., Genome, 1991, 34, 1028-1031.
39. Unkles, S. E., Duncan, J. M. and Kinghorn, J. R., Curr. Genet., 1992, 22, 317-318.
40. Lessa, E. P., Mol. Biol. Evol., 1992, 9, 323-330.
41. Welsh, J. and McClelland, M., Nucleic Acids Res., 1991, 19, 6823-6831.
42. Tingey, S. V., Rafalski, J. A. and Williams, J. G. K., Application of RAPD Technology to Plant Breeding (ed. Neff, M.), ASHS Publishers, Minnesota, 1993, pp. 3-8.
43. Williams, J. G. K., Hanafey, M. K., Rafalski, J. A. and Tingey, S. V., Methods Enzymol., 1993, 218, 704-740.
44. Caetano-Anolleś, G., Bassam, B. J. and Gresshoff, P. M., Bio/Technol., 1991, 9, 553-557.
45. Welsh, J. and McClelland, M., Nucleic Acids Res., 1991, 19, 861-866.
46. Michelmore, R. W., Paran, I. and Kesseli, R. V., Proc. Natl. Acad. Sci. USA, 1991, 88, 9828-9832.
47. Martin, G. B., Williams, J. G. K. and Tanksley, S. D., Proc. Natl. Acad. Sci. USA, 1991, 88, 2336-2340.
48. Olson, M., Hood, L., Cantor, C. and Botstein, D., Science, 1989, 245, 1434-1435.
49. Koniecyzn, A. and Ausubel, F. M., Plant J., 1993, 4, 403-410.
50. Jarvis, P., Lister, C., Szabo, V. and Dean, C., Plant Mol. Biol., 1994, 24, 685-687.
51. Epplen, J. T., Advances in Electrophoresis (eds Inchrambach, A., Dunn, N. J. and Radola, B. J.), VCH, Cambridge, 1992, vol. 5, pp. 59-112.
52. Williams, J. G. K., Kubelik, A. R., Livak, K. J., Rafalski, J. A. and Tingey, S. V., Nucleic Acids Res., 1990, 18, 6531-6535.
53. Gupta, M., Chyi, Y-S., Romero-Severson, J. and Owen, J. L., Theor. Appl. Genet., 1994, 89, 998-1006.
54. Richardson, T., Cato, S., Ramser, J., Kahl, G. and Weising, K., Nucleic Acids Res., 1995, 23, 3798-3799.
55. Zabeau, M., European Patent Application, 1993, Publication No. 0534858A1.
56. Ehrlich, H. A., Gelfand, D. H. and Sninsky, J. J., Science, 1991, 252, 1643-1651.
57. Vos, P., Hogers, R., Bleeker, M., Reijans, M., Van, de, Lee, T., Hornes, M., Frijters, A., Pot, J., Peleman, T., Kuiper, M. and Zabeau, M., Nucleic Acids Res., 1995, 23, 4407-4414.
58. Hongtrakul, V., Huestis, G. M. and Knapp, S. J., Theor. Appl. Genet., 1997, 95, 400-407.
59. Yong, G., Glenn, R., Buss, G. R. and Saghai, Maroof, M. A., Proc. Natl. Acad. Sci. USA, 1996, 93, 11751-11756.
60. Paglia, G. P., Olivieri, A. M. and Morgante, M., Mol. Gen. Genet., 1998, 258, 466-478.
61. Flavell, R. B., Tibtech, 1995, 13, 313-319.
62. Hayes, P. M., Theor. Appl. Genet., 1993, 87, 392-401.
63. Helentjaris, T., Slocum, M., Wright, S., Schaefer, A. and Nienhuis, J., Theor. Appl. Genet., 1986, 72, 761-769.
64. Gardiner, J. M., Coe, E. H., Melia-Hancock, S., Hoisington, D. A. and Chao, S., Genetics, 1993, 134, 917-930.
65. McCouch, S. R., Kochert, G., Yu, Z. H., Wang, Z. Y., Khush, G. S., Coffman, W. R. and Tanksley, S. D., Theor. Appl. Genet., 1988, 76, 815-829.
66. Chang, C., Bowman, A. W., Lander, E. S. and Meyerowitz, E. W., Proc. Natl. Acad. Sci. USA, 1988, 85, 6856-6860.
67. Nam, H. G., Giraudat, J., Den Boer, B., Moonan, F., Loos, W. D. B., Hauge, B. M. and Goodman, H. M., Plant Cell, 1989, 1, 699-705.
68. Zhao, X. and Kochert, G., Mol. Gen. Genet., 1992, 2311, 353-359.
69. Tanksley, S. D., Ganal, M. W. and Martin, G. B., Trends Genet., 1995, 11, 63-68.
70. Panaud, O., Chen, X. and McCouch, S. R., Genome, 1995, 38, 1170-1176.
71. Milbourne, D., Meyer, R. C., Collins, A. J., Ramsay, L. D., Gebhardt, C. and Waugh, R., Mol. Gen. Genet., 1998, 259, 233-245.
72. Ellis, T. H., Poyser, S. J., Knox, M. R., Vershinin, A. V. and Ambrose, M. J., Mol. Gen. Genet., 1998, 260, 9-91.
73. Paterson, A. H., Lander, E. S., Hewitt, J. D., Peterson, S. E., Lincoln, S. E. and Tanskley, S. D., Nature, 1988, 335, 721-726.
74. Weller, J. I., Soller, M. and Brody, T., Genetics, 1988, 118, 329-339.
75. Williamson, V. M., Ho, J-Y., Wu, F. F., Miller, N. and Kaloshian, I., Theor. Appl. Genet., 1994, 87, 757-763.
76. Martin, B., Nienhuis, J., King, G. and Schaefer, A., Science, 1989, 243, 1725-1728.
77. Sarfatti, M., Katan, J., Fluhr, R. and Zamir, D., Theor. Appl. Genet., 1989, 78, 755-759.
78. Schachermayr, G., Siedler, H., Winzeler, H. and Keller, B., Theor. Appl. Genet., 1994, 88, 110-115.
79. Schachermayr, G., Messmer, M. M., Feuillet, C., Winzeler, H. and Keller, B., Theor. Appl. Genet., 1995, 90, 982-990.
80. Klein-Lankhorst, R., Rietveld, P., Machiels, B., Verkerk, R., Weide, R., Gebhardt, C., Kornneef, M. and Zabel, P., Theor. Appl. Genet., 1991, 81, 661-667.
81. Messeguer, R., Ganal, M., DeVincente, M. C., Young, N. D., Bolkan, H. and Tanksley, S. D., Theor. Appl. Genet., 1991, 82, 529-536.
82. Xiao, J., Li, J., Grandillo, S., Ahn, S. N., Yuan, L., Tanksley, S. D. and McCouch, S. R., Genetics, 1998, 150, 899-909.
83. Shattuck-Eidens, D., Bell, R. N., Mitchell, J. T. and McWorther, V. C., GATA, 1991, 8, 240-245.
84. D'Ovidio, R. and Anderson, O. D., Theor. Appl. Genet., 1994, 88, 759-763.
85. Feuillet, C., Messmer, M., Schachermayr, G. and Keller, B., Mol. Gen. Genet., 1995, 248, 553-562.
86. Niewohner, J., Salamini, F. and Gebhardt, C., Mol. Breed., 1995, 1, 65-78.
87. Mohler, V. and Jahoor, A., Theor. Appl. Genet., 1996, 93, 1078-1082.
88. Klein-Lankhorst, R. M., Vermunt, A., Weide, R., Liharska, T. and Zabel, P., Theor. Appl. Genet., 1991, 83, 108-114.
89. Paran, I., Kesseli, R. and Michelmore, R., Genome, 1991, 34, 1021-1027.
90. Bradshaw, J. E., Hackett, C. A., Meyer, R. C., Milbourne, D., McNicol, J. W., Phillips, M. S. and Waugh, R., Theor. Appl. Genet., 1998, 97, 202-210.
91. Yu, Y. G., Saghai, Maroof, M. A., Buss, G. R., Maughan, P. J. and Tolin, S. A., Phytopathology, 1994, 84, 60-64.
92. Williams, M. N. V., Pande, N., Nair, S., Mohan, M. and Bennett, J., Theor. Appl. Genet., 1991, 82, 489-498.
93. Carlson, J. E., Tulsieram, L. K., Glaubitz, J. G., Luk, V. W. K., Kauffeldt, C. and Rutledge, R., Theor. Appl. Genet., 1991, 83, 194-200.
94. Chaparoo, J., Werner, D., O'Malley, D. and Sederoff, R., Plant Genome I, San Diego, Nov. 9-11, 1992, p. 21.
95. Naik, S., Gill, K. S., Prakasa Rao, V. S., Gupta, V. S., Tamhankar, S. A., Pujar, S., Gill, B. S. and Ranjekar, P. K., Theor. Appl. Genet., 1998, 97, 535-540.
96. Akagi, H., Yokozeki, Y., Inagaki, A., Nakamura, A. and Fujimura, T., Genome, 1996, 39, 1205-1209.
97. Ratnaparkhe, M. B., Santra, D. K., Tullu, A. and Muehlbauer, F. J., Theor. Appl. Genet., 1998, 96, 348-353.
98. Jena, K. K. and Khush, G. S., Theor. Appl. Genet., 1990, 80, 737-745.
99. Gale, M. D. and Devos, K. M., Proc. Natl. Acad. Sci. USA, 1998, 95, 1971-1974.
100. Ribaut, J. M., Hu, X., Hoisington, D. and Gonzalez-de-leon, D., Plant Mol. Biol., 1997, 15, 154-162.
101. Slatkin., Science, 1987, 263, 787-792.
102. Avise, ed., Molecular Markers, Natural History and Evolution, Chapman and Hall, New York, 1994, pp. 1-5.
103. Callow, J. A., in Biotechnology and Plant Genetic Resources Conservation and Use (eds Callow, J. A. and Newbury, H. J.), 1997.
104. Virk, P. S., Newbury, H. J., Jackson, M. T. and Ford-Loyd, B. V., in Biotechnology and Plant Genetic Resources: Conservation and Use (eds Callow, J. A. and Newbury, H. J.), 1997.
105. Gill, K. S., Lubbers, E. L., Gill, B. S., Raupp, W. J. and Cox, T. S., Genome, 1991, 34, 362-374.
106. Fukuchi, A., Kikuchi, F. and Hirochika, H., Jpn. J. Genet., 1993, 68, 195-204.
107. Moore, S. S., Sargeant, L. L., King, T. J., Mattick, J. S., Georges, M. and Hetzel, D. J. S., Genomics, 1991, 10, 654-660.
108. Sen, A., Balyan, H. S., Sharma, P. C., Ramesh, B., Kumar, A., Roy, J. K., Varshney, R. K. and Gupta, P. K., Wheat Information Service, 1997, 85, 35-42.
109. Wu, J., Krutovskii, K. V. and Strauss, S. H., Genetics, 1998, 150, 1605-1614.
110. Powell, W. et al., Proc. Natl. Acad. Sci. USA, 1995, 92, 7759-7763.
111. Powell, W., Machray, G. C. and Provan, J., Trends Plant Sci., 1996, 1, 215-222.
112. Mason-Gamer, R. J., Weil, C. F. and Kellogg, E. A., Mol. Biol. Evol., 1998, 15, 1658-1673.
113. Deshpande, A. D., Ramakrishna, W., Mulay, G. P., Gupta, V. S. and Ranjekar, P. K., Theor. Appl. Genet., 1998, 97, 135-140.
114. Harlan, J. R., Plant Genetic Resources: A Conservation Imperative (eds Yeatman, C. W., Kafton, D. and Wilkes, G.), West View, Boulder Co, 1987, pp. 111-129.
115. Ulstrop, A. J., Agric. Handbook, 1978, 199, 1.
116. Brown, S. M. and Kresovich, S., in Genome Mapping in Plants (ed. Paterson, A. H.), Clandes, New York, 1996, pp. 85-93.
117. Chowdari, K. V., Davierwala, A. P., Gupta, V. S., Ranjekar, P. K. and Govila, O. P., Theor. Appl. Genet., 1998, 97, 154-162.
118. Udupa, S. M., Robertson, L. D., Weigand, F., Baum, M. and Kahl, G., Mol. Gen. Genet., 1999, 261, 354-363.
119. Pakniyat, H., Powell, W., Baird, E., Handley, L. L., Robinson, D., Scrimgeour, E. M., Nevo, E., Hackett, C. A., Caligari, P. D. S. and Forster, B. P., Genome, 1997, 40, 332-341.
120. Tsumura, Y., Ohba, K. and Strauss, S. H., Theor. Appl. Genet., 1996, 92, 40-45.
121. Blair, M. W., Panaud, O. and McCouch, S. R., Theor. Appl. Genet., 1999, 98, 780-792.
122. Nagaoka, T. and Ogihara, Y., Theor. Appl. Genet., 1997, 94, 597-602.
123. Yanagisawa, T., Hayashi, M., Hirai, A. and Harada, K., Euphytica, 1994, 80, 129-136.
124. Ramakrishna, W., Lagu, M. D., Gupta, V. S. and Ranjekar, P. K., Theor. Appl. Genet., 1994, 88, 402-406.
125. Gupta, V. S., Ramakrishna, W., Rawat, S. R. and Ranjekar, P. K., Biochem. Genet., 1994, 32, No. 1/2, 1-8.
126. Broun, P. and Tanksley, S. D., Plant Mol. Biol., 1993, 23, 231-242.
127. Dallas, J. F., McIntyre, C. L. and Gustafson, J. P., Genome, 1993, 36, 445-448.
128. Zhou, Z. and Gustafson, J. P., Theor. Appl. Genet., 1995, 91, 481-488.
129. Ramakrishna, W., Chowdari, K. V., Lagu, M. D., Gupta, V. S. and Ranjekar, P. K., Theor. Appl. Genet., 1995, 90, 1000-1006.
130. Sant, V. J., Patankar, A. G., Gupta, V. S., Sarode, N. D., Mhase, L. B., Sainani, M. N., Deshmukh, R. B. and Ranjekar, P. K., Theor. Appl. Genet., 1999, 98, 1217-1225.
131. Thomas, M. R. and Scott, N. S., Theor. Appl. Genet., 1993, 86, 985-990.
132. Thomas, M. R., Matsumoto, S., Cain, P. and Scott, N. S., Theor. Appl. Genet., 1993, 86, 173-180.
133. Rongwen, J., Akkaya, M. S., Bhagwat, A. A., Lavi, U. and Cregan, P. B., Theor. Appl. Genet., 1995, 90, 43-48.
134. Morjane, H., Geistlinger, J., Harrabi, M., Weising, K. and Kahl, G., Curr. Genet., 1994, 26, 191-197.
135. Parasnis, A. S., Ramakrishna, W., Chowdari, K. V., Gupta, V. S. and Ranjekar, P. K., Theor. Appl. Genet., 1999, in press.
136. Di Stilio, V. S., Kesseli, R. V. and Mulcahy, D. L., Genetics, 1998, 149, 2057-2062.
137. Naqvi, N. I., Bonman, J. M., Mackill, D. J., Nelson, R. J. and Chattoo, B. B., Mol. Breed., 1995, 1, 341-348.
138. Nair, S., Bentur, J. S., Prasad, Rao. U. and Mohan, M., Theor. Appl. Genet., 1995, 91, 68-73.
139. Nair, S., Kumar, A., Srivastava, M. N. and Mohan, M., Theor. Appl. Genet., 1996, 92, 660-665.
140. Roy, J. K., Prasad, M., Varshney, R. K., Balyan, H. S., Blake, T. K., Dhaliwal, H. S., Singh, H., Edwards, K. J. and Gupta, P. K., Theor. Appl. Genet., 1999, in press.
141. Prasad, M., Varshney, R. K., Kumar, A., Balyan, H. S., Sharma, P. C., Roy, J. K. and Gupta, P. K., Theor. Appl. Genet., 1999, in press.
142. Nair, S., Prasad Rao, U., Bennett, J. and Mohan, M., Theor. Appl. Genet., 1995, 91, 978-986.
143. Pujar, S., Tamhankar, S. A., Rao, V. S., Gupta, V. S., Naik, S. and Ranjekar, P. K., Theor. Appl. Genet., 1999, in press.
144. Ratnaparkhe, M. B., Gupta, V. S., Ven Murthy, M. R. and Ranjekar, P. K., Theor. Appl. Genet., 1995, 91, 893-898.
145. Chowdari, K. V., Davierwala, A. P., Gupta, V. S., Ranjekar, P. K. and Govila, O. P., Theor. Appl. Genet., 1998, 97, 154-162.