Allelic variation at (TAA)(II) microsatellite loci in a world collection of chickpea (Cicer arietinum L.) germplasm

Molecular and General Genetics

Volumn 261, Issue 2, 1999, Pages 354-363

  Udupa, S M ^a   Robertson, L D ^a,c   Weigand, F ^a   Baum, M ^a   Kahl, G ^b  

^a INTERNATIONAL CENTER FOR AGRICULTURAL RESEARCH IN THE DRY AREAS ICARDA   (Syrian Arab Republic)

^b GOETHE UNIVERSITY   (Germany)

^c Department of Population Medicine and Diagnostic Sciences   (United States)

Author keywords

Infinite allele model; Microsatellite polymorphism; Mutation mechanisms; Replication slippage; Stepwise mutation model

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ARTICLE; CULTIVAR; DNA POLYMORPHISM; GENE MUTATION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

ALLELES; FABACEAE; GENES, PLANT; PHYLOGENY; PLANTS, MEDICINAL; TRINUCLEOTIDE REPEATS; VARIATION (GENETICS);

CICER ARIETINUM; CICER ECHINOSPERUM; CICER RETICULATUM; EMBRYOPHYTA;

EID: 0033036972     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050976     Document Type: Article

References (56)

1. Ahmad F, Gaur PM, Slinkard AE (1992) Isozyme polymorphism and phylogenetic interpretations in the genus Cicer L. Theor Appl Genet 83:620-627
2. Anonymous (1994) DNA fingerprinting and RAPD analysis of 83 Cicer arietinum L. accessions. Annu Rep Germplasm Program: Legumes. ICARDA, Aleppo, Syria, pp 47-51
3. Anonymous (1996) Application of molecular marker techniques. Annu Rep Germplasm Program: Legumes. ICARDA, Aleppo, Syria, pp 120-135
4. Beckmann JS, Weber JL (1992) Survey of human and rat micro-satellites. Genomics 12:627-631
5. Chen X, Temnykh S, Xu Y, Cho YG, McCouch SR (1997) Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.) Theor Appl Genet 95:553-567
6. Clark AG (1987) Neutrality tests of highly polymorphic restriction fragment length polymorphisms. Am J Hum Genet 41:948-956
7. Crow JF, Kimura M (1970) An introduction to population genetics theory. Harper and Row, New York
8. Dib C, Faure S, Fizames C, Samson D, Drouot N, Vignal A, Millasseau P, Marc S, Hazan J, Seboun E, Lathrop M, Gyapay G, Morissette J, Weissenbach J (1996) A comprehensive genetic map of the human genome based on 5264 microsatellites. Nature 380:152-154
9. Dietrich WF, Miller J, Steen R, Merchant MA, Damronboles D, Husain Z, Dredge R, Daly MJ, Ingalls KA, O'Connor TJ, Evans CA, DeAngeilis MM, Levinson DM, Kruglyak L, Goodman N, Copeland NG, Jenkins NA, Hawkins TL, Stein L, Page DC, Lander ES (1996) A comprehensive genetic map of the mouse genome. Nature 380:149-152
10. Edwards A, Hammond HA, Jim L, Caskey CT, Chakraborty R (1992) Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics 12:241-253
11. Ellegren H, Primer CR, Scheldon BC (1995) Microsatellite evolution: directionality or bias in locus selection. Nat Genet 11:360-362
12. Estoup A, Garnery L, Solignac M, Cornuet J-M (1995) Microsatellite variation in honey bee (Apis mellifera L.) populations: hierarchical genetic structure and test of the infinite allele and stepwise mutation models. Genetics 140:679-695
13. Ewens WJ (1972) The sampling theory of selectively neutral alleles. Theor Pop Biol 3:87-112
14. Field D, Wills C (1996) Long, polymorphic microsatellites in simple organisms, Proc R Soc Lond B 263:209-215
15. Goldstein DB, Clark AG (1995) Microsatellite variation in North American populations of Drosophila melanogaster. Nucleic Acids Res 23:3882-3886
16. Goldstein DB, Ruìz-Linares A, Feldman M, Cavalli-Sforza LL (1995) An evaluation of genetic distance for use with microsatellite loci. Genetics 139:463-471
17. Gomez KA, Gomez AA (1984) Statistical procedures for agricultural research. John Wiley, New York
18. Goodfellow PN (1992) Variation is now the theme. Nature 359:777-778
19. Henderson ST, Petes TD (1992) Instability of simple sequence DNA in Saccharomyces cerevisiae. Mol Cell Biol 12:2749-2757
20. Hill WG, Robertson A (1968) Linkage disequilibrium in finite populations. Theor Appl Genet 38:226-231
21. Hüttel B (1996) Mikrosatelliten in der Genomanalyse: Abundanz, Variabilität und Vererbung in der Kichererbse (Cicer arietinum L.). Ph.D. thesis, University of Frankfurt, Frankfurt/Main, Germany
22. Hüttel B, Winter P, Weigand F, Udupa SM, Muehlbauer F, Saxena MC, Kahl G (1997) Highly polymorphic allele-specific microsatellites for chickpea. Abstracts of the International Food Legume Research Conference III, Adelaide
23. Innan H, Terauchi R, Miyashita T (1997) Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana. Genetics 146:1441-1452
24. Jarret RL, Merrick LC, Holms T, Evans J, Aradhya MK (1997) Simple sequence repeats in watermelon (Citrullus lanatus (Thunb.) Matsum. and Nakai). Genome 40:433-441
25. Kazan K, Muehlbauer F (1991) Allozyme variation and phylogeny in annual species of Cicer (Leguminosae). Plant Syst Evol 175:11-21
26. Kimura M, Crow J (1964) The number of alleles that can be maintained in a finite population. Genetics 49:725-738
27. Kimura M, Ohta T (1975) Distribution of allelic frequencies in a finite population under stepwise production of neutral alleles. Proc Natl Acad Sci USA 72:2761-2764
28. Kimura M, Ohta T (1978) Stepwise mutation model and distribution of allelic frequencies in a finite population. Proc Natl Acad Sci USA 75:2868-2872
29. Labdi M, Robertson LD, Singh KB, Charrier A (1995) Genetic diversity and phylogenetic relationships among the annual Cicer species as revealed by isozyme polymorphism. Euphytica 88:181-188
30. Ladizinsky G, Adler A (1976) The origin of chickpea (Cicer arietinum L.). Euphytica 25:211-217
31. Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4:213-221
32. MacHugh DE, Shriver MD, Loftus RT, Cunningham P, Bradley G (1997) Microsatellite DNA variation and the evolution, domestication and phylogeny of taurine and zebu cattle (Bos taurus and Bos indicus). Genetics 146:1071-1086
33. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
34. Norušis MJ (1993) SPSS for Windows. Basic system user's guide, release 6.0. SPSS, Chicago
35. Ohta T, Kimura M (1969) Linkage disequilibrium due to random genetic drift. Genet Res 13:47-55
36. Ohta T, Kimura M (1973) The model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a genetic population. Genet Res 22:201-204
37. Robertson LD, Singh KB, Ocampo B (1995) A catalog of annual wild Cicer species. ICARDA, Aleppo, Syria
38. Rongwen J, Akkaya MS, Bhagwat AA, Lavi U, Cregan PB (1995) The use of microsatellite DNA markers for soybean genotype identification. Theor Appl Genet 90:43-48
39. Russell J, Fuller J, Young G, Thomas B, Taramino G, Macaulay M, Waugh R, Powell W (1997) Discriminating between barley genotypes using microsatellite markers. Genome 40:442-450
40. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
41. Schlötterer C, Tautz D (1992) Slippage synthesis of simple sequence DNA. Nucleic Acids Res 20:211-215
42. Schlötterer C, Vogel C, Tautz D (1997) Polymorphism and locus-specific effects on polymorphism at microsatellite loci in natural Drosophila melanogaster populations. Genetics 146:309-320
43. Singh KB (1987) Chickpea breeding, In: Saxena MC, Singh KB (eds) The chickpea. CAB International, Willingford, Oxon., UK, pp 127-162
44. Singh KB, Holly L, Bejiga G (1991) A catalog of kabuli chickpea germplasm. ICARDA, Aleppo, Syria
45. Strand M, Prolla TA, Liskay RM, Petes TD (1993) Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature 365:274-276
46. Tautz D, Schlötterer C (1994) Simple sequences. Curr Opin Gen Dev 4:832-837
47. Thomas MR, Cain P, Scott NS (1994) DNA typing of grapevines: a universal methodology and database for describing cultivars and evaluating genetic relatedness. Plant Mol Biol 25:939-949
48. Udupa SM, Sharma A, Sharma RP, Pai RA (1993) Narrow genetic variability in Cicer arietinum L. as revealed by RFLP analysis. J Plant Biochem Biotech 2:83-86
49. Udupa SM, Weigand F, Saxena MC, Kahl G (1998) Genotyping with RAPD and microsatellite markers resolves pathotype diversity in the ascochyta blight pathogen of chickpea. Theor Appl Genet 97:299-307
50. Valdes AM, Slatkin M, Freimer NB (1993) Allelic frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics 133:737-749
51. n polymorphisms Genomics 7:524-530
52. Weber J, Wong C (1993) Mutation of human short tandem repeats. Hum Mol Genet 2:1123-1128
53. Weising K, Beyermann B, Ramser J, Kahl G (1991) Plant DNA fingerprinting with radioactive and digoxigenated oligonucleotide probes complementary to simple repetitive DNA sequences. Electrophoresis 12:159-169
54. Weising K, Kaemmer D, Weigand F, Epplen JT, Kahl G (1992) Oligonucleotide fingerprinting reveals various probe-dependent levels of informativeness in chickpea (Cicer arietinum). Genome 35:436-442
55. Winter P, Pfaff T, Hüttel B, Sahi S, Arreguin, R, Udupa SM, Muehlbauer F, Kahl G (1997) The first codominant DNA marker map of the chickpea genome. Abstracts of the International Food Legume Research Conference III, Adelaide
56. Wolff RK, Plaeke KR, Jeffrey AJ, White R (1991) Unequal crossing over between homologous chromosomes is not the major mechanism involved in generation of new alleles at VNTR loci. Genomics 5:382-384