-
1
-
-
0029023343
-
NUPARM and NUCGEN: Software for analysis and generation of sequence dependent nucleic acid structures
-
Bansal, M., D. Bhattacharya, and B. Ravi. 1995. NUPARM and NUCGEN: software for analysis and generation of sequence dependent nucleic acid structures. Comput. Appl. Biosci. 11:281-287.
-
(1995)
Comput. Appl. Biosci.
, vol.11
, pp. 281-287
-
-
Bansal, M.1
Bhattacharya, D.2
Ravi, B.3
-
4
-
-
0011156533
-
Molecular simulation studies on the d(CGCGAATTCGCG) duplex: Hydration, ion atmosphere, structure and dynamics
-
Beveridge, D. L., P. Subramanian, B. Jeyaram, S. Swaminathan, and G. Ravishanker. 1990. Molecular simulation studies on the d(CGCGAATTCGCG) duplex: hydration, ion atmosphere, structure and dynamics. J. Biomol. Struct. Dyn. 3:79-112.
-
(1990)
J. Biomol. Struct. Dyn.
, vol.3
, pp. 79-112
-
-
Beveridge, D.L.1
Subramanian, P.2
Jeyaram, B.3
Swaminathan, S.4
Ravishanker, G.5
-
5
-
-
0024543897
-
A self-consistent formulation for analysis and generation of non-uniform DNA structures
-
Bhattacharya, D., and M. Bansal. 1989. A self-consistent formulation for analysis and generation of non-uniform DNA structures. J. Biomol. Struct. Dyn. 6:635-653.
-
(1989)
J. Biomol. Struct. Dyn.
, vol.6
, pp. 635-653
-
-
Bhattacharya, D.1
Bansal, M.2
-
6
-
-
0033801089
-
Localisation and dynamics of sodium counterions around DNA in solution from molecular dynamics simulation
-
Bonvin, M. J. J. A. 2000. Localisation and dynamics of sodium counterions around DNA in solution from molecular dynamics simulation. Eur. Biophys. J. 29:57-60.
-
(2000)
Eur. Biophys. J.
, vol.29
, pp. 57-60
-
-
Bonvin, M.J.J.A.1
-
7
-
-
0026654185
-
Crystal structure of a Berenil-d(CGCAAATTGCG) complex an example of drug-DNA recognition based on sequence-dependent structural features
-
Brown, D. G., M. R. Sanderson, E. Garman, and S. Neidle. 1992. Crystal structure of a Berenil-d(CGCAAATTGCG) complex an example of drug-DNA recognition based on sequence-dependent structural features. J. Mol. Biol. 226:481-490.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 481-490
-
-
Brown, D.G.1
Sanderson, M.R.2
Garman, E.3
Neidle, S.4
-
8
-
-
0025272657
-
Crystal structure of a Berenil-dodecanucleotide complex: The role of water in sequence-specific ligand binding
-
Brown, D. G., M. R. Sanderson, J. V. Skelly, T. C. Jenkins, T. Brown, E. Garman, D. I. Stuart, and S. Neidle. 1990. Crystal structure of a Berenil-dodecanucleotide complex: the role of water in sequence-specific ligand binding. EMBO J. 9:1329-1334.
-
(1990)
EMBO J.
, vol.9
, pp. 1329-1334
-
-
Brown, D.G.1
Sanderson, M.R.2
Skelly, J.V.3
Jenkins, T.C.4
Brown, T.5
Garman, E.6
Stuart, D.I.7
Neidle, S.8
-
9
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., P. D. Adams, G. M. Clore, W. L. Delano, P. Gros, R. W. Grosse-Kunstleve, J. S. Jiang, J. Kuszeroski, M. Nilges, N. S. Pannu, R. J. Read, T. Simonson, and G. L. Warren. 1998. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. 54:905-921.
-
(1998)
Acta Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszeroski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Simonson, T.12
Warren, G.L.13
-
10
-
-
0023666166
-
The unusual conformation adopted by the adenine tracts in kinetoplast DNA
-
Burkhoff, A. M., and T. D. Tullius. 1987. The unusual conformation adopted by the adenine tracts in kinetoplast DNA. Cell. 48:935-943.
-
(1987)
Cell
, vol.48
, pp. 935-943
-
-
Burkhoff, A.M.1
Tullius, T.D.2
-
11
-
-
0026512120
-
The role of a minor groove spine of hydration in stabilizing poly(dA). poly(dT) against fluctuational interbase H-bond disruption in the premelting temperature regime
-
Chen, Y. Z., and E. W. Prohofsky. 1992. The role of a minor groove spine of hydration in stabilizing poly(dA). poly(dT) against fluctuational interbase H-bond disruption in the premelting temperature regime. Nucleic Acids Res. 20:415-419.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 415-419
-
-
Chen, Y.Z.1
Prohofsky, E.W.2
-
12
-
-
0034714010
-
1 Å crystal structures of B-DNA reveal sequence-specific binding and groove specific bending of DNA by magnesium and calcium
-
Chiu, T. K., and R. E. Dickerson. 2000. 1 Å crystal structures of B-DNA reveal sequence-specific binding and groove specific bending of DNA by magnesium and calcium. J. Mol. Biol. 301:915-945.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 915-945
-
-
Chiu, T.K.1
Dickerson, R.E.2
-
13
-
-
0033600794
-
Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-A-A-T-T-C-G-C-G
-
Chiu, T. K., M. Kaczor-Greskowiak, and R. E. Dickerson. 1999. Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-A-A-T-T-C-G-C-G. J. Mol. Biol. 292:598-608.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 598-608
-
-
Chiu, T.K.1
Kaczor-Greskowiak, M.2
Dickerson, R.E.3
-
14
-
-
0029857504
-
Isohelicity and phasing in drug-DNA sequence recognition: Crystal structure of a Tris (benzimidazole)-oligonucleotide complex
-
Clark, G. R., E. J. Gray, and S. Neidle. 1996a. Isohelicity and phasing in drug-DNA sequence recognition: crystal structure of a Tris (benzimidazole)-oligonucleotide complex. Biochemistry. 35:13745-13752.
-
(1996)
Biochemistry
, vol.35
, pp. 13745-13752
-
-
Clark, G.R.1
Gray, E.J.2
Neidle, S.3
-
15
-
-
0030471389
-
Designer DNA-binding drugs: The crystal structure of a meta-hydroxy analogue of Hoechst 33258 bound to d(CGCGAATTCGCG)2
-
Clark, G. R., C. J. Squire, E. J. Gray, W. Leupin, and S. Neidle. 1996b. Designer DNA-binding drugs: the crystal structure of a meta-hydroxy analogue of Hoechst 33258 bound to d(CGCGAATTCGCG)2. Nucleic Acids Res. 24:4882-4889.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4882-4889
-
-
Clark, G.R.1
Squire, C.J.2
Gray, E.J.3
Leupin, W.4
Neidle, S.5
-
16
-
-
0023494886
-
A bifurcated hydrogen-bonded conformation in the d(A.T) basepairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin
-
Coll, M., C. A. Frederick, A. H. Wang, and A. Rich. 1987. A bifurcated hydrogen-bonded conformation in the d(A.T) basepairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin. Proc. Natl. Acad. Sci. USA. 84:8385-8389.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 8385-8389
-
-
Coll, M.1
Frederick, C.A.2
Wang, A.H.3
Rich, A.4
-
17
-
-
0025690307
-
Attraction, phasing and neighbour effects of histone octamers on curved DNA
-
Constanz, G., E. Di Mauro, G. Salina, and R. Negri. 1990. Attraction, phasing and neighbour effects of histone octamers on curved DNA. J. Mol. Biol. 216:363-374.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 363-374
-
-
Constanz, G.1
Di Mauro, E.2
Salina, G.3
Negri, R.4
-
18
-
-
0029011701
-
A second generation force field for the simulations of proteins, nucleic acids and organic molecules
-
Cornell, W. D., P. Cieplak, C. I. Bayly, I. R. Gould, K. M. Merz, Jr., D. M. Ferguson, D. C. Spellmeyer, T. Fox, J. W. Caldwell, and P. A. Kollman. 1995. A second generation force field for the simulations of proteins, nucleic acids and organic molecules. J. Am. Chem. Soc. 117: 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz K.M., Jr.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
19
-
-
0028357259
-
Three-dimensional crystal structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor-groove-binding drug Hoechst 33258
-
Cristina Vega, M., I. Garcia Saez, J. Aymami, R. Eritja, G. A. Van der Marel, J. H. Van Boom, A. Rich, and M. Coll. 1994. Three-dimensional crystal structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor-groove-binding drug Hoechst 33258. Eur. J. Biochem. 222:721-726.
-
(1994)
Eur. J. Biochem.
, vol.222
, pp. 721-726
-
-
Cristina Vega, M.1
Garcia Saez, I.2
Aymami, J.3
Eritja, R.4
Van der Marel, G.A.5
Van Boom, J.H.6
Rich, A.7
Coll, M.8
-
20
-
-
33846823909
-
Particle mesh Ewald - An N.logn method for Ewald sums in large systems
-
Darden, T., D. York, and L. Pedersen. 1993. Particle mesh Ewald - an N.logn method for Ewald sums in large systems. J. Chem. Phys. 98: 10089-10092.
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
21
-
-
0034681195
-
Sequence-specific binding of counterions to B-DNA
-
Denisov, V. P., and B. Halle. 2000. Sequence-specific binding of counterions to B-DNA. Proc. Natl. Acad. Sci. USA. 97:629-633.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 629-633
-
-
Denisov, V.P.1
Halle, B.2
-
22
-
-
0019843568
-
Structure of a B-DNA dodecamer. III. Geometry of hydration
-
Drew, H. R., and R. E. Dickerson. 1981. Structure of a B-DNA dodecamer. III. Geometry of hydration. J. Mol. Biol. 151:535-556.
-
(1981)
J. Mol. Biol.
, vol.151
, pp. 535-556
-
-
Drew, H.R.1
Dickerson, R.E.2
-
23
-
-
0031551574
-
Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: Conformation and hydration
-
Duan, Y., P. Wilkosz, M. Crowley, and J. M. Rosenberg. 1997. Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: conformation and hydration. J. Mol. Biol. 272:553-572.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 553-572
-
-
Duan, Y.1
Wilkosz, P.2
Crowley, M.3
Rosenberg, J.M.4
-
25
-
-
0026707681
-
Crystal structure of a pentamidine oligonucleotide complex: Implications for DNA-binding properties
-
Edwards, K. J., T. C. Jenkins, and S. Neidle. 1992. Crystal structure of a pentamidine oligonucleotide complex: implications for DNA-binding properties. Biochemistry. 31:7104-7109.
-
(1992)
Biochemistry
, vol.31
, pp. 7104-7109
-
-
Edwards, K.J.1
Jenkins, T.C.2
Neidle, S.3
-
26
-
-
0032544507
-
Two distinct modes of protein-induced bending in DNA
-
Review
-
El Hassan, M. A., and C. R. Calladine. 1998. Two distinct modes of protein-induced bending in DNA. J. Mol. Biol. 282:331-343 (Review.).
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 331-343
-
-
El Hassan, M.A.1
Calladine, C.R.2
-
27
-
-
0032851951
-
Sodium and chloride ions as part of the DNA solvation shell
-
Feig, M., and M. B. Pettit. 1999. Sodium and chloride ions as part of the DNA solvation shell. Biophys. J. 77:1769-1781.
-
(1999)
Biophys. J.
, vol.77
, pp. 1769-1781
-
-
Feig, M.1
Pettit, M.B.2
-
28
-
-
0033385861
-
Three-centre C-H...O hydrogen bonds in the DNA minor groove: Analysis of oligonucleotide crystal structures
-
Ghosh, A., and M. Bansal. 1999a. Three-centre C-H...O hydrogen bonds in the DNA minor groove: analysis of oligonucleotide crystal structures. Acta Crystallogr. D. 55:2005-2012.
-
(1999)
Acta Crystallogr. D
, vol.55
, pp. 2005-2012
-
-
Ghosh, A.1
Bansal, M.2
-
29
-
-
0033579558
-
C-H.O hydrogen bonds in minor groove of A-tracts in DNA double helices
-
Ghosh, A., and M. Bansal. 1999b. C-H.O hydrogen bonds in minor groove of A-tracts in DNA double helices. J. Mol. Biol. 294:1149-1158.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 1149-1158
-
-
Ghosh, A.1
Bansal, M.2
-
30
-
-
0029565563
-
Structure of a dicationic monoimidazole lexitropsin bound to DNA
-
Goodsell, D. S., H. L. Ng, M. L. Kopka, J. W. Lown, and R. E. Dickerson. 1995. Structure of a dicationic monoimidazole lexitropsin bound to DNA. Biochemistry. 34:16654-16661.
-
(1995)
Biochemistry
, vol.34
, pp. 16654-16661
-
-
Goodsell, D.S.1
Ng, H.L.2
Kopka, M.L.3
Lown, J.W.4
Dickerson, R.E.5
-
31
-
-
0034327565
-
Flexible structure of DNA: Ion dependence of minor-groove structure and dynamics
-
Hamelberg, D., L. McFaill-Isom, L. D. Williams, and W. D. Wilson. 2000. Flexible structure of DNA: ion dependence of minor-groove structure and dynamics. J. Am. Chem. Soc. 120:10513-10520.
-
(2000)
J. Am. Chem. Soc.
, vol.120
, pp. 10513-10520
-
-
Hamelberg, D.1
McFaill-Isom, L.2
Williams, L.D.3
Wilson, W.D.4
-
32
-
-
0034802485
-
Influence of dynamic positions of cations on the structure of the DNA minor groove: Sequence-dependent effects
-
Hamelberg, D., L. D. Williams, and W. D. Wilson. 2001. Influence of dynamic positions of cations on the structure of the DNA minor groove: sequence-dependent effects. J. Am. Chem. Soc. 123:7745-7755.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 7745-7755
-
-
Hamelberg, D.1
Williams, L.D.2
Wilson, W.D.3
-
33
-
-
0035964383
-
Locating monovalent cations in the grooves of B-DNA
-
Howerton, S. B., C. C. Sines, D. Vanderveer, and L. D. Williams. 2001. Locating monovalent cations in the grooves of B-DNA. Biochemistry. 40:10023-10031.
-
(2001)
Biochemistry
, vol.40
, pp. 10023-10031
-
-
Howerton, S.B.1
Sines, C.C.2
Vanderveer, D.3
Williams, L.D.4
-
34
-
-
0030763137
-
Localisation of divalent metal ions in the minor groove of DNA A-tracts
-
Hud, N. V., and J. Feigon. 1997. Localisation of divalent metal ions in the minor groove of DNA A-tracts. J. Am. Chem. Soc. 119:5756-5757.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 5756-5757
-
-
Hud, N.V.1
Feigon, J.2
-
35
-
-
0033605083
-
Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending
-
Hud, N. V., V. Sklenar, and J. Feigon. 1999. Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending. J. Mol. Biol. 286:651-660.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 651-660
-
-
Hud, N.V.1
Sklenar, V.2
Feigon, J.3
-
36
-
-
0000356656
-
A graphics model building and refinement system for macromolecules
-
Jones, T. A. 1978. A graphics model building and refinement system for macromolecules. J. Appl. Crystallogr. 11:268-272.
-
(1978)
J. Appl. Crystallogr.
, vol.11
, pp. 268-272
-
-
Jones, T.A.1
-
37
-
-
0020692923
-
Ordered water structure around a B-DNA dodecamer - A quantitative study
-
Kopka, M. L., A. V. Fratini, H. R. Drew, and R. E. Dickerson. 1983. Ordered water structure around a B-DNA dodecamer - a quantitative study. J. Mol. Biol. 163:129-146.
-
(1983)
J. Mol. Biol.
, vol.163
, pp. 129-146
-
-
Kopka, M.L.1
Fratini, A.V.2
Drew, H.R.3
Dickerson, R.E.4
-
38
-
-
0021834118
-
Binding of an antitumor drug to DNA. Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G
-
Kopka, M. L., C. Yoon, D. Goodsell, P. Pjura, and R. E. Dickerson. 1985. Binding of an antitumor drug to DNA. Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G. J. Mol. Biol. 183:553-563.
-
(1985)
J. Mol. Biol.
, vol.183
, pp. 553-563
-
-
Kopka, M.L.1
Yoon, C.2
Goodsell, D.3
Pjura, P.4
Dickerson, R.E.5
-
39
-
-
0024828309
-
The structure of DAPI bound to DNA
-
Larsen, T., D. S. Goodsell, D. Cascio, K. Grzeskowiak, and R. E. Dickerson. 1989. The Structure of DAPI bound to DNA. J. Biomol. Struct. Dyn. 7:477-491.
-
(1989)
J. Biomol. Struct. Dyn.
, vol.7
, pp. 477-491
-
-
Larsen, T.1
Goodsell, D.S.2
Cascio, D.3
Grzeskowiak, K.4
Dickerson, R.E.5
-
40
-
-
0029928846
-
A crystallographic and spectroscopic study of the complex between d(CGCGAATTCGCG)2 and 2,5-bis(4-guanylphenyl)-furan, an analogue of berenil. Structural origins of enhanced DNA-binding affinity
-
Laughton, C. A., F. Tanious, C. M. Nunn, D. W. Boykin, W. D. Wilson, and S. Neidle. 1996. A crystallographic and spectroscopic study of the complex between d(CGCGAATTCGCG)2 and 2,5-bis(4-guanylphenyl)-furan, an analogue of berenil. Structural origins of enhanced DNA-binding affinity. Biochemistry. 35:5655-5661.
-
(1996)
Biochemistry
, vol.35
, pp. 5655-5661
-
-
Laughton, C.A.1
Tanious, F.2
Nunn, C.M.3
Boykin, D.W.4
Wilson, W.D.5
Neidle, S.6
-
41
-
-
0027058824
-
NMR observation of individual molecules of hydration water bound to DNA duplexes: Direct evidence for a spine of hydration water present in aqueous solution
-
Liepinsh, E., G. Otting, and K. Wuthrich. 1992. NMR observation of individual molecules of hydration water bound to DNA duplexes: direct evidence for a spine of hydration water present in aqueous solution. Nucleic Acids Res. 20:6549-6553.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 6549-6553
-
-
Liepinsh, E.1
Otting, G.2
Wuthrich, K.3
-
42
-
-
0032568852
-
On the potential role of the amino nitrogen atom as a hydrogen bond acceptor in macromolecule
-
Luisi, B., M. Orozco, J. Sponer, F. J. Luque, and Z. Shakked. 1998. On the potential role of the amino nitrogen atom as a hydrogen bond acceptor in macromolecule. J. Mol. Biol. 279:1123-1136.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 1123-1136
-
-
Luisi, B.1
Orozco, M.2
Sponer, J.3
Luque, F.J.4
Shakked, Z.5
-
43
-
-
0034671291
-
DNA structure: What's in charge?
-
McConnell, K. J., and D. L. Beveridge. 2000. DNA structure: what's in charge? J. Mol. Biol. 304:803-820.
-
(2000)
J. Mol. Biol.
, vol.304
, pp. 803-820
-
-
McConnell, K.J.1
Beveridge, D.L.2
-
44
-
-
0035900536
-
Molecular dynamics simulations of B′-DNA: Sequence effects on A-tract-induced bending and flexibility
-
McConnell, K. J., and D. L. Beveridge. 2001. Molecular dynamics simulations of B′-DNA: sequence effects on A-tract-induced bending and flexibility. J. Mol. Biol. 314:23-40.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 23-40
-
-
McConnell, K.J.1
Beveridge, D.L.2
-
46
-
-
0345363149
-
Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing
-
Minasov, G., V. Tereshko, and M. Egli. 1999. Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing. J. Mol. Biol. 291:83-99.
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 83-99
-
-
Minasov, G.1
Tereshko, V.2
Egli, M.3
-
47
-
-
0019323773
-
Highly structured water network in crystals of a deoxydi-nucleoside-drug complex
-
Neidle, S., H. M. Berman, and H. S. Shieh. 1980. Highly structured water network in crystals of a deoxydi-nucleoside-drug complex. Nature. 288:129-133.
-
(1980)
Nature
, vol.288
, pp. 129-133
-
-
Neidle, S.1
Berman, H.M.2
Shieh, H.S.3
-
48
-
-
0023513912
-
The structure of an oligo(dA). oligo(dT) tract and its biological implications
-
Nelson, H. C. M., J. T. Finch, B. F. Luisi, and A. Klug. 1987. The structure of an oligo(dA). oligo(dT) tract and its biological implications. Nature. 330:221-226.
-
(1987)
Nature
, vol.330
, pp. 221-226
-
-
Nelson, H.C.M.1
Finch, J.T.2
Luisi, B.F.3
Klug, A.4
-
49
-
-
0029008592
-
Sequence-dependent drug binding to the minor groove of DNA: Crystal structure of the DNA dodecamer d(CGCAAATTTGCG)2 cornplexed with propamidine
-
Nunn, C. M., and S. Neidle. 1995. Sequence-dependent drug binding to the minor groove of DNA: crystal structure of the DNA dodecamer d(CGCAAATTTGCG)2 cornplexed with propamidine. J. Med. Chem. 38:2317-2325.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 2317-2325
-
-
Nunn, C.M.1
Neidle, S.2
-
50
-
-
0025885778
-
Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G
-
Quintana, J. R., A. A. Lipanov, and R. E. Dickerson. 1991. Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry. 30:10294-10306.
-
(1991)
Biochemistry
, vol.30
, pp. 10294-10306
-
-
Quintana, J.R.1
Lipanov, A.A.2
Dickerson, R.E.3
-
51
-
-
0031755274
-
Hydration of phosphate group in double-helical DNA
-
Schneider, B., K. Patel, and H. M. Berman. 1998. Hydration of phosphate group in double-helical DNA. Biophys. J. 75:2422-2434.
-
(1998)
Biophys. J.
, vol.75
, pp. 2422-2434
-
-
Schneider, B.1
Patel, K.2
Berman, H.M.3
-
52
-
-
84965102253
-
RNA double-helical fragments at atomic resolution
-
Seeman, N. C., J. M. Rosenberg, F. L. Suddath, J. J. P. Kim, and A. Rich. 1976. RNA double-helical fragments at atomic resolution. J. Mol. Biol. 104:109-114.
-
(1976)
J. Mol. Biol.
, vol.104
, pp. 109-114
-
-
Seeman, N.C.1
Rosenberg, J.M.2
Suddath, F.L.3
Kim, J.J.P.4
Rich, A.5
-
53
-
-
0031552364
-
X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature
-
Shatzky-Schwartz, M., N. Arbuckle, M. Eisenstein, D. Rabinovich, A. Bareket-Samish, T. E. Haran, B. F. Luisi, and Z. Shakked. 1997. X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature. J. Mol. Biol. 267:595-623.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 595-623
-
-
Shatzky-Schwartz, M.1
Arbuckle, N.2
Eisenstein, M.3
Rabinovich, D.4
Bareket-Samish, A.5
Haran, T.E.6
Luisi, B.F.7
Shakked, Z.8
-
54
-
-
0033618122
-
Molecular dynamics on A-tract structure and flexibility
-
Sherer, E. C., S. A. Harris, R. Soliva, M. Orozco, and C. A. Laughton. 1999. Molecular dynamics on A-tract structure and flexibility. J. Am. Chem. Soc. 121:5981-5991.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 5981-5991
-
-
Sherer, E.C.1
Harris, S.A.2
Soliva, R.3
Orozco, M.4
Laughton, C.A.5
-
55
-
-
0030873459
-
Molecular dynamics simulations of the d(T.A.T) triple helix
-
Shields, G. C., C. A. Laughton, and M. Orozco. 1997. Molecular dynamics simulations of the d(T.A.T) triple helix. J. Am. Chem. Soc. 119:7463-7469.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 7463-7469
-
-
Shields, G.C.1
Laughton, C.A.2
Orozco, M.3
-
56
-
-
0032387836
-
Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations
-
Shui, X., C. C. Sines, L. McFail-Isom, G. G. Hu, and L. D. Williams. 1998. Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations. Biochemistry. 37:16877-16887.
-
(1998)
Biochemistry
, vol.37
, pp. 16877-16887
-
-
Shui, X.1
Sines, C.C.2
McFail-Isom, L.3
Hu, G.G.4
Williams, L.D.5
-
57
-
-
0034606447
-
DNA minor groove interactions and the biological activity of 2,5-bis-[4-(N-alkylamidino)phenyl] furans
-
Simpson, I. J., M. Lee, A. Kumar, D. W. Boykin, and S. Neidle. 2000. DNA minor groove interactions and the biological activity of 2,5-bis-[4-(N-alkylamidino)phenyl] furans. Bioorg. Med. Chem. Lett. 10:2593-2597.
-
(2000)
Bioorg. Med. Chem. Lett.
, vol.10
, pp. 2593-2597
-
-
Simpson, I.J.1
Lee, M.2
Kumar, A.3
Boykin, D.W.4
Neidle, S.5
-
58
-
-
0034669632
-
Cations mediate B-DNA conformational heterogeneity
-
Sines, C. C., L. McFail-Isom, S. B. Howerton, D. Vanderveer, and L. D. Williams. 2000. Cations mediate B-DNA conformational heterogeneity. J. Am. Chem. Soc. 122:11048-11056.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 11048-11056
-
-
Sines, C.C.1
McFail-Isom, L.2
Howerton, S.B.3
Vanderveer, D.4
Williams, L.D.5
-
60
-
-
0027219319
-
Molecular structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor groove binding drug netropsin
-
Tabernero, L., N. Verdaguer, M. Coll, I. Fita, G. A. Van der Marel, J. H. Van Boom, A. Rich, and J. Aymami. 1993. Molecular structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor groove binding drug netropsin. Biochemistry. 32:8403-8410.
-
(1993)
Biochemistry
, vol.32
, pp. 8403-8410
-
-
Tabernero, L.1
Verdaguer, N.2
Coll, M.3
Fita, I.4
Van der Marel, G.A.5
Van Boom, J.H.6
Rich, A.7
Aymami, J.8
-
61
-
-
0033585580
-
The Dickerson-Drew B-DNA dodecamer revisited at atomic resolution
-
Tereshko, V., G. Minasov, and M. Egli. 1999a. The Dickerson-Drew B-DNA dodecamer revisited at atomic resolution. J. Am. Chem. Soc. 121:470-471.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 470-471
-
-
Tereshko, V.1
Minasov, G.2
Egli, M.3
-
62
-
-
0033594498
-
A "hydrat-ion" spine in a B-DNA minor groove
-
Tereshko, V., G. Minasov, and M. Egli. 1999b. A "hydrat-ion" spine in a B-DNA minor groove. J. Am. Chem. Soc. 121:3590-3595.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 3590-3595
-
-
Tereshko, V.1
Minasov, G.2
Egli, M.3
-
63
-
-
0028357259
-
Three-dimensional crystal structure of the A-tract DNA dodecamer d(CGCAAATTFGCG) complexed with the minor-groove-binding drug Hoechst 33258
-
Vega, M. C., I. Garcia-Saez, J. Aymami, R. Eritja, G. A. Van Der Marel, J. H. VanBoom, A. Rich, and M. Coll. 1994. Three-dimensional crystal structure of the A-tract DNA dodecamer d(CGCAAATTFGCG) complexed with the minor-groove-binding drug Hoechst 33258. Eur. J. Biochem. 222:721-726.
-
(1994)
Eur. J. Biochem.
, vol.222
, pp. 721-726
-
-
Vega, M.C.1
Garcia-Saez, I.2
Aymami, J.3
Eritja, R.4
Van Der Marel, G.A.5
VanBoom, J.H.6
Rich, A.7
Coll, M.8
-
64
-
-
0034005285
-
Delocalized monovalent cations sequester within the AT-tract minor groove of [d(CGCGAATTCGCG)]2
-
Woods, K. K., L. McFail-Isom, C. C. Sines, S. B. Howerton, R. K. Stephens, and L. D. Williams. 2000. Delocalized monovalent cations sequester within the AT-tract minor groove of [d(CGCGAATTCGCG)]2. J. Am. Chem. Soc. 122:1546-1547.
-
(2000)
J. Am. Chem. Soc.
, vol.122
, pp. 1546-1547
-
-
Woods, K.K.1
McFail-Isom, L.2
Sines, C.C.3
Howerton, S.B.4
Stephens, R.K.5
Williams, L.D.6
-
65
-
-
0031047279
-
Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: Fractional occupancy of electronegative pockets
-
Young, M. A., B. Jayaram, and D. L. Beveridge. 1997a. Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: fractional occupancy of electronegative pockets. J. Am. Chem. Soc. 119:59-69.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 59-69
-
-
Young, M.A.1
Jayaram, B.2
Beveridge, D.L.3
-
66
-
-
0030862276
-
A 5-nano-second molecular dynamics trajectory for B-DNA: Analysis of structure, motions, and solvation
-
Young, M. A., G. Ravishanker, and D. L. Beveridge. 1997b. A 5-nano-second molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation. Biophys. J. 73:2313-2336.
-
(1997)
Biophys. J.
, vol.73
, pp. 2313-2336
-
-
Young, M.A.1
Ravishanker, G.2
Beveridge, D.L.3
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