Iron-responsive genes of phanerochaete chrysosporium isolated by differential display reverse transcription polymerase chain reaction

Environmental Microbiology

Volumn 5, Issue 9, 2003, Pages 777-786

  Assmann, Eliana Maria ^a   Ottoboni, Laura Maria Mariscal ^a   Ferraz, André ^b   Rodríguez, Jaime ^c   De Mello, Maricilda Palandi ^a  

^a UNIVERSITY OF CAMPINAS   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

^c UNIVERSITY OF CONCEPCIÓN   (Chile)

Author keywords

[No Author keywords available]

Indexed keywords

BLOTTING, NORTHERN; ELECTROPHORESIS, AGAR GEL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FUNGAL PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; HSP70 HEAT-SHOCK PROTEINS; IRON; IRON-REGULATORY PROTEINS; MEMBRANE PROTEINS; MEMBRANE TRANSPORT PROTEINS; MOLECULAR SEQUENCE DATA; MULTIENZYME COMPLEXES; PEROXIDASES; PHANEROCHAETE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, FUNGAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SIDEROPHORES; TRANSCRIPTION, GENETIC;

CHRYSOSPORIUM; FUNGI; PHANEROCHAETE; PHANEROCHAETE CHRYSOSPORIUM; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE;

EID: 0041350474     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.2003.00475.x     Document Type: Article

References (51)

1. Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
2. Angerer, A., Klupp, B., and Braun, V. (1992) Iron transport systems of Serratia marcescens. J Bacteriol 174: 1378-1387.
3. Barnett, M.J., Fisher, R.F., Jones, T., Komp, C., Abola, A.P., Barloy-Hubler, F., et al. (2001) Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid. Proc Natl Acad Sci USA 98: 9883-9888.
4. Blaiseau, P.-L., Lesuisse, E., and Camadro, J.-M. (2001) Aft2p, a novel iron-regulated transcription activator that modulates, with Aft1p, intracellular iron use and resistance to oxidative stress in yeast. J Biol Chem 276: 34221-34226.
5. Braun, V., and Killmann, H. (1999) Bacterial solutions to the iron-supply problem. TIBS 24: 104-109.
6. Chen, J., Rappsilber, J., Chiang, Y.C., Russell, P., Mann, M., and Denis, C.L. (2001) Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex. J Mol Biol 314: 683-694.
7. Conesa, A., Punt, P.J., and van den Hondel, C.A. (2002) Fungal peroxidases: molecular aspects and applications. J Biotechnol 93: 143-158.
8. Crosa, J.H. (1997) Signal transduction and transcriptional and posttranscriptional control of iron-regulated genes in bacteria. Microbiol Mol Biol Rev 61: 319-336.
9. Crosa, J.H., and Walsh, C.T. (2002) Genetics and assembly line enzymology of siderophore biosynthesis in bacteria. Microbiol Mol Biol Rev 66: 223-249.
10. Dancis, A., Klausner, R.D., Hinnebusch, A.G., and Barriocanal, J.G. (1990) Genetic evidence that ferric reductase is required for iron uptake in Saccharomyces cerevisiae. Mol Cell Biol 10: 2294-2301.
11. Dugourd, D., Martin, C., Rioux, C.R., Jacques, M., and Harel, J. (1999) Characterization of a periplasmic ATP-binding cassette iron import system of Brachyspira (Serpulina). Hyodysenteriae J Bacteriol 181: 6948-6957.
12. Ferraz, A., Parra, C., Freer, J., Baeza, J., and Rodriguez, J. (2001) Occurrence of iron-reducing compounds in biodelignified 'palo podrido' wood samples. Int Biodet Biodegradat 47: 203-208.
13. Georgatsou, E., and Alexandraki, D. (1994) Two distinctly regulated genes are required for ferric reduction, the first step of iron uptake in Saccharomyces cerevisiae. Mol Cell Biol 14: 3065-3073.
14. Gong, S., Bearden, S.W., Geoffroy, V.A., Fetherston, J.D., and Perry, R.D. (2001) Characterization of the Yersinia pestis Yfu ABC inorganic iron transport system. Infect Immun 67: 2829-2837.
15. Goodell, B., Jellison, J., Liu, J., Daniel, G., Paszczynski, A., Fekete, F. et al. (1997) Low molecular weight chelators and phenolic compounds isolated from wood decay fungi and their role in the fungal biodegradation of wood. J Biotechnol 53: 133-152.
16. Hacohen, N., Kramer, S., Sutherland, D., Hiromi, Y., and Krasnow, M.A. (1998) Sprouty encodes a novel antagonist of FGF signaling that patterns apical branching of the Drosophila airways. Cell 92: 253-263.
17. Hammel, K.E., Kapich, A.N., Jensen, K.A., and Ryan, Z.C. (2002) Reactive oxygen species as agents of wood decay by fungi. Enzyme Microbial Technol 30: 445-453.
18. Harmsen, M.C., Schuren, F.H., Moukha, S.M., van Zuilien, C.M., Punt, P.J., and Wessels, J.G.H. (1992) Sequence analysis of the glyceraldehyde-3-phosphate dehydrogenase genes from the basidiomycetes Schizophyllum commune, Phanerochaete chrysosporium and Agaricus bisporus. Curr Genet 22: 447-454.
19. Hernández-Macedo, M.L., Ferraz, A., Rodríguez, J., Ottoboni, L.M., and De Mello, M.P. (2002) Iron-regulated proteins in Phanerochaete chrysosporium and Lentinula edodes: differential analysis by sodium dodecyl sulfate polyacrylamide gel electrophoresis and two-dimensional polyacrylamide gel electrophoresis profiles. Electrophoresis 23: 655-661.
20. Hershko, A., and Ciechanover, A. (1998) The ubiquitin system. Annu Rev Biochem 67: 425-479.
21. Howard, D.H. (1999) Acquisition, transport, and storage of iron by pathogenic fungi. Clin Microbiol Rev 12: 394-404.
22. Impagnatiello, M.A., Weitzer, S., Gannon, G., Compagni, A., Cotten, M., and Christofori, G. (2001) Mammalian sprouty-1 and -2 are membrane-anchored phosphoprotein inhibitors of growth factor signaling in endothelial cells. J Cell Biol 52: 1087-1098.
23. Jensen, K.A., Houtman, C.J., Ryan, Z.C., and Hammel, K.E. (2001) Pathways for extracellular Fenton chemistry in the brown rot basidiomycete Gloeophyllum trabeum. Appl Environ Microbiol 67: 2705-2711.
24. Kim, Y., Yun, C.-W., and Philpott, C.C. (2002) Ferrichrome induces endosome to plasma membrane cycling of the ferrichrome transporter, Arn1p. Saccharomyces cerevisiae. EMBO J 21: 3632-3642.
25. Kirk, T.K., and Farell, R.L. (1987) Enzymatic 'combustion': the microbial degradation of lignin. Annu Rev Microbiol 41: 456-506.
26. Kurihara, H., Wariishi, H., and Tanaka, H. (2002) Chemical stress-responsive genes from the lignin-degrading fungus Phanerochaete chrysosporium exposed to dibenzo-p-dioxin. FEMS Microbiol Lett 212: 217-220.
27. Liang, P., and Pardee, A.B. (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257: 967-971.
28. Mademidis, A., Killmann, H., Kraas, W., Flechsler, I., Jung, G., and Braun, V. (1997) ATP-dependent ferric hydroxamate transport system in Escherichia coli: periplasmic FhuD interacts with a periplasmic and with a transmembrane/cytoplasmic region of the integral membrane protein FhuB, as revealed by competitive peptide mapping. Mol Microbiol 26: 1109-1123.
29. Marger, M.D., and Saier, M.H. (1993) A major superfamily of transmembrane facilitators that catalyse uniport, symport and antiport. Trends Biochem Sci 18: 13-20.
30. Mei, B., Budde, A.D., and Leong, S.A. (1993) sid1, a gene initiating siderophore biosynthesis in Ustilago maydis: molecular characterization, regulation by iron, and role in phytopathogenicity. Proc Natl Acad Sci USA 90: 903-907.
31. Milagres, A.M.F., Arantes, V., Medeiros, C.L., and Machuca, A. (2002) Production of metal chelating compounds by white and brown-rot fungi and their comparative abilities for pulp bleaching. Enzyme Microbial Technol 30: 562-565.
32. Moeck, G.S., and Coulton, J.W. (1998) TonB-dependent iron acquisition: mechanisms of siderophore-mediated active transport. Mol Microbiol 28: 675-681.
33. Omura, S., Ikeda, H., Ishikawa, J., Hanamoto, A., Takahashi, C., Shinose, M., et al. (2001) Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc Natl Acad Sci USA 98: 12215-12220.
34. Paszczynski, A., Crawford, R., Funk, D., and Goodell, B. (1999) De novo synthesis of 4,5-dimethoxycatechol and 2, 5-dimethoxyhydroquinone by the brown rot fungus Gloeophyllum trabeum. Appl Environ Microbiol 65: 674-679.
35. Paulino, L.C., De Mello, M.P., and Ottoboni, L.M. (2002) Differential gene expression in response to copper in Acidithiobacillus ferrooxidans analyzed by RNA arbitrarily primed polymerase chain reaction. Electrophoresis 23: 520-527.
36. Ramos, P.C., Hockendorff, J., Johnson, E.S., Varshavsky, A., and Dohmen, R.J. (1998) Ump1p is required for proper maturation of the 20S proteasome and becomes its substrate upon completion of the assembly. Cell 92: 489-499.
37. Reddy, C.A., and D'Souza, T.M. (1994) Physiology and molecular biology of the lignin peroxidases of Phanerochaete chrysosporium. FEMS Microbiol Rev 13: 137-152.
38. Richardson, P.T., and Park, S.F. (1995) Enterochelin acquisition in Campylobacter coli: characterization of components of a binding-protein-dependent transport system. Microbiology 141: 3181-3191.
39. Rodríguez, J., Ferraz, A., and De Mello, M.P. (2003) Role of metals in wood biodegradation. In ACS Symposium Series 845: Wood Deterioration and Preservation: Advances in our Changing World. Goodell, B., Nicholas, D.D. and Schultz, T.P. (eds). American Chemical Society Washington D.C., Portland: Oxford University Press, pp. 154-174.
40. Schilke, B., Voisine, C., Beinert, H., and Craig, E. (1999) Evidence for a conserved system for iron metabolism in the mitochondria of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 96: 10206-10211.
41. Sokolovsky, V., Kaldenhoff, R., Ricci, M., and Russo, V.E.A. (1995) Fast and reliable mini-prep RNA extraction from Neurospora crassa. [WWW document]. URL http://www.fgsc.net/fgn37/sokol.html.
42. Staszczak, M. (2002) Proteasomal degradation pathways in Trametes versicolor and Phlebia radiata. Enzyme Microbial Technol 30: 537-541.
43. Tanaka, H., Itakura, S., Hirano, T., and Enoki, A. (1996) An extracellular substance from the white-rot basidiomycete Phanerochaete chrysosporium for reducing molecular oxygen and ferric iron. Holzforschung 50: 541-548.
44. Voisard, C., Wang, J., McEvoy, J.L., Xu, P., and Leong, S.A. (1993) urbs1, a gene regulating siderophore biosynthesis in Ustilago maydis, encodes a protein similar to the erythroid transcription factor GATA-1. Mol Cell Biol 13: 7091-7100.
45. Wolfger, H., Mamnun, Y.M., and Kuchler, K. (2001) Fungal ABC proteins: pleiotropic drug resistance, stress response and cellular detoxification. Res Microbiol 152: 375-389.
46. Wyckoff, E.E., Valle, A.M., Smith, S.L., and Payne, S.M. (1999) A multifunctional ATP-binding cassette transporter system from Vibrio cholerae transports vibriobactin and enterobactin. J Bacteriol 181: 7588-7596.
47. Yamaguchi-Iwai, Y., Ueta, R., Fukunaka, A., and Sasaki, R. (2002) Subcellular localization of Aft1 transcription factor responds to iron status in Saccharomyces cerevisiae. J Biol Chem 277: 18914-18918.
48. Yuan, W.M., Gentil, G.D., Budde, A.D., and Leong, S.A. (2001) Characterization of the Ustilago maydis sid2 gene, encoding a multidomain peptide synthetase in the ferrichrome biosynthetic gene cluster. J Bacteriol 183: 4040-4051.
49. Yun, C.-W., Ferea, T., Rashford, J., Ardon, O., Brown, P.O., Botstein, D., et al. (2000) Desferrioxamine-mediated iron uptake in Saccharomyces cerevisiae. Evidence for two pathways of iron uptake. J Biol Chem 275: 10709-10715.
50. Yun, C.-W., Bauler, M., Moore, R.E., Klebba, P.E., and Philpott, C.C. (2001) The role of the FRE family of plasma membrane reductases in the uptake of siderophore-iron in Saccharomyces cerevisiae. J Biol Chem 276: 10218-10223.
51. Zwiers, L.H., and De Waard, M.A. (2000) Characterization of the ABC transporter genes MgAtr1 and MgAtr2 from the wheat pathogen Mycosphaerella graminicola. Fungal Genet Biol 30: 115-125.