메뉴 건너뛰기




Volumn 161, Issue 2, 1998, Pages 199-208

Human immunodeficiency virus, DNA and statistics

Author keywords

Coalescence theory; Human immunodeficiency virus; Phylogenetic analysis; Statistical models

Indexed keywords


EID: 0039988644     PISSN: 09641998     EISSN: None     Source Type: Journal    
DOI: 10.1111/1467-985X.00099     Document Type: Article
Times cited : (2)

References (37)
  • 1
    • 0027958857 scopus 로고
    • In vivo distribution and cytopathology of variants of human immunodeficiency virus type 1 showing restricted sequence variability in the V3 loop
    • Donaldson, Y. K., Bell, J. E., Holmes, E. C., Hughes, E. S., Brown, H. K. and Simmonds, P. (1994) In vivo distribution and cytopathology of variants of human immunodeficiency virus type 1 showing restricted sequence variability in the V3 loop. J. Virol, 68, 5991-6005.
    • (1994) J. Virol , vol.68 , pp. 5991-6005
    • Donaldson, Y.K.1    Bell, J.E.2    Holmes, E.C.3    Hughes, E.S.4    Brown, H.K.5    Simmonds, P.6
  • 2
    • 0001027766 scopus 로고
    • Statistical inference of phylogenies
    • Felsenstein, J. (1983) Statistical inference of phylogenies. J. R. Statist. Soc. A, 146, 246-272.
    • (1983) J. R. Statist. Soc. A , vol.146 , pp. 246-272
    • Felsenstein, J.1
  • 3
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: Inference and reliability
    • _ (1988) Phylogenies from molecular sequences: inference and reliability. Ann. Rev. Genet., 22, 521-565.
    • (1988) Ann. Rev. Genet. , vol.22 , pp. 521-565
  • 4
    • 0031026942 scopus 로고    scopus 로고
    • Networks and viral evolution
    • Fitch, W. M. (1997) Networks and viral evolution. J. Mol. Evoln, 44, S65-S75.
    • (1997) J. Mol. Evoln , vol.44
    • Fitch, W.M.1
  • 5
    • 0028913008 scopus 로고
    • The uses of evolutionary biology
    • Futuyma, D. J. (1995) The uses of evolutionary biology. Science, 267, 41-42.
    • (1995) Science , vol.267 , pp. 41-42
    • Futuyma, D.J.1
  • 6
    • 0031041347 scopus 로고    scopus 로고
    • A likelihood method for the detection of selection and recombination using nucleotide sequences
    • Grassly, N. C. and Holmes, E. C. (1997) A likelihood method for the detection of selection and recombination using nucleotide sequences. Mol. Biol. Evoln, 14, 239-247.
    • (1997) Mol. Biol. Evoln , vol.14 , pp. 239-247
    • Grassly, N.C.1    Holmes, E.C.2
  • 8
    • 0029834661 scopus 로고    scopus 로고
    • Inferring complex phylogenies
    • Hillis, D. M. (1996) Inferring complex phylogenies. Nature, 383, 130-131.
    • (1996) Nature , vol.383 , pp. 130-131
    • Hillis, D.M.1
  • 9
    • 0028925649 scopus 로고
    • Assessing molecular phylogenies
    • Hillis, D. M. and Huelsenback, J. P. (1995) Assessing molecular phylogenies. Science, 267, 255-256.
    • (1995) Science , vol.267 , pp. 255-256
    • Hillis, D.M.1    Huelsenback, J.P.2
  • 11
    • 0040733900 scopus 로고    scopus 로고
    • Molecular phylogenies and the genetic structure of viral populations
    • (ed. S. Stearns). Oxford: Oxford University Press. To be published
    • Holmes, E. C. (1998) Molecular phylogenies and the genetic structure of viral populations. In Evolution in Health & Disease (ed. S. Stearns). Oxford: Oxford University Press. To be published.
    • (1998) Evolution in Health & Disease
    • Holmes, E.C.1
  • 13
    • 0026647419 scopus 로고
    • Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient
    • Holmes, E. C., Zhang, L. Q., Simmonds, P., Ludlam, C. A. and Leigh Brown, A. J. (1992) Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient. Proc. Natn. Acad. Sci. USA, 89, 4835-4839.
    • (1992) Proc. Natn. Acad. Sci. USA , vol.89 , pp. 4835-4839
    • Holmes, E.C.1    Zhang, L.Q.2    Simmonds, P.3    Ludlam, C.A.4    Leigh Brown, A.J.5
  • 14
    • 0025635705 scopus 로고
    • Retroviral recombination and reverse transcription
    • Hu, W. S and Temin, H. M. (1990) Retroviral recombination and reverse transcription. Science, 250, 1227-1233.
    • (1990) Science , vol.250 , pp. 1227-1233
    • Hu, W.S.1    Temin, H.M.2
  • 15
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • (eds D. Futuyma and J. Antonovics), Oxford: Oxford University Press
    • Hudson, R. R. (1990) Gene genealogies and the coalescent process. In Oxford Surveys in Evolutionary Biology (eds D. Futuyma and J. Antonovics), vol. 7, pp. 1-44. Oxford: Oxford University Press.
    • (1990) Oxford Surveys in Evolutionary Biology , vol.7 , pp. 1-44
    • Hudson, R.R.1
  • 16
    • 0030902563 scopus 로고    scopus 로고
    • Phylogenetic methods come of age: Testing hypotheses in an evolutionary context
    • Huelsenback, J. P. and Rannala, B. (1997) Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science, 276, 227-232.
    • (1997) Science , vol.276 , pp. 227-232
    • Huelsenback, J.P.1    Rannala, B.2
  • 17
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (ed. H. N. Munro), New York: Academic Press
    • Jukes, T. H. and Cantor, C. R. (1969) Evolution of protein molecules. In Mammalian Protein Metabolism III (ed. H. N. Munro), pp. 21-132. New York: Academic Press.
    • (1969) Mammalian Protein Metabolism III , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 19
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evoln, 16, 111-120.
    • (1980) J. Mol. Evoln , vol.16 , pp. 111-120
    • Kimura, M.1
  • 20
    • 0002556819 scopus 로고
    • On the genealogy of large populations
    • Kingman, J. F. C. (1982) On the genealogy of large populations. J. Appl. Probab. A, 19, 27-43.
    • (1982) J. Appl. Probab. A , vol.19 , pp. 27-43
    • Kingman, J.F.C.1
  • 21
    • 0027436702 scopus 로고
    • Increasing antigenic and genetic diversity of the V3 variable domain of the human immunodeficiency virus envelope protein in the course of the AIDS epidemic
    • Kuiken, C. L., Zwart, G., Baan, E., Coutinho, R. A., van den Hoek, J. A. R. and Goudsmit, J. (1993) Increasing antigenic and genetic diversity of the V3 variable domain of the human immunodeficiency virus envelope protein in the course of the AIDS epidemic. Proc. Natn. Acad. Sci. USA, 90, 9061-9065.
    • (1993) Proc. Natn. Acad. Sci. USA , vol.90 , pp. 9061-9065
    • Kuiken, C.L.1    Zwart, G.2    Baan, E.3    Coutinho, R.A.4    Van Den Hoek, J.A.R.5    Goudsmit, J.6
  • 22
    • 0004732896 scopus 로고    scopus 로고
    • Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population
    • Leigh Brown, A. J. (1997) Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population. Proc. Natn. Acad. Sci. USA, 94, 1862-1865.
    • (1997) Proc. Natn. Acad. Sci. USA , vol.94 , pp. 1862-1865
    • Leigh Brown, A.J.1
  • 23
    • 0031054436 scopus 로고    scopus 로고
    • HIV-1: Gambling on the evolution of drug resistance?
    • Leigh Brown, A. J. and Richman, D. D. (1997) HIV-1: gambling on the evolution of drug resistance? Nat. Med., 3, 268-271.
    • (1997) Nat. Med. , vol.3 , pp. 268-271
    • Leigh Brown, A.J.1    Richman, D.D.2
  • 26
    • 0023740248 scopus 로고
    • Rates and dates of divergence between AIDS virus nucleotide sequences
    • Li, W.-H., Tanimura, M. and Sharp, P. M. (1988) Rates and dates of divergence between AIDS virus nucleotide sequences. Mol. Biol. Evoln, 5, 313-330.
    • (1988) Mol. Biol. Evoln , vol.5 , pp. 313-330
    • Li, W.-H.1    Tanimura, M.2    Sharp, P.M.3
  • 27
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • Lockhart, P. J., Steel, M. A., Hendy, M. D. and Penny, D. (1994) Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evoln, 11, 605-612.
    • (1994) Mol. Biol. Evoln , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 28
    • 0029973141 scopus 로고    scopus 로고
    • Recombination leads to the rapid emergence of HIV-1 dually resistant mutants under selective drug pressure
    • Moutouh, L., Corbeil, J. and Richman, D. D. (1996) Recombination leads to the rapid emergence of HIV-1 dually resistant mutants under selective drug pressure. Proc. Natn. Acad. Sci. USA, 93, 6106-6111.
    • (1996) Proc. Natn. Acad. Sci. USA , vol.93 , pp. 6106-6111
    • Moutouh, L.1    Corbeil, J.2    Richman, D.D.3
  • 29
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M. and Gojobori, T. (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evoln, 3, 418-426.
    • (1986) Mol. Biol. Evoln , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 31
    • 0029967721 scopus 로고    scopus 로고
    • HIV-1 dynamics in vivo: Virion clearance rate, infected cell life-span, and viral generation time
    • Perelson, A. S., Neumann, A. U., Markowitz, M., Leonard, J. M. and Ho, D. D. (1996) HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time. Science, 271, 1582-1586.
    • (1996) Science , vol.271 , pp. 1582-1586
    • Perelson, A.S.1    Neumann, A.U.2    Markowitz, M.3    Leonard, J.M.4    Ho, D.D.5
  • 33
    • 0029654007 scopus 로고
    • Cross-species transmission and recombination of "AIDS" viruses
    • Sharp, P. M., Robertson, D. L. and Hahn, B. H. (1995) Cross-species transmission and recombination of "AIDS" viruses. Phil. Trans. R. Soc. Lond. B, 349, 41-47.
    • (1995) Phil. Trans. R. Soc. Lond. B , vol.349 , pp. 41-47
    • Sharp, P.M.1    Robertson, D.L.2    Hahn, B.H.3
  • 34
    • 0027312156 scopus 로고
    • Rates of amino acid change in the envelope protein correlate with pathogenicity of primate lentiviruses
    • Shpaer, E. G. and Mullins, J. I. (1993) Rates of amino acid change in the envelope protein correlate with pathogenicity of primate lentiviruses. J. Mol. Evoln, 37, 57-65.
    • (1993) J. Mol. Evoln , vol.37 , pp. 57-65
    • Shpaer, E.G.1    Mullins, J.I.2
  • 36
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima, F. (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics, 105, 437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 37
    • 0027132974 scopus 로고
    • Maximum likelihood estimation of phylogeny from DNA sequences when substitutions rates differ over sites
    • Yang, Z. (1993) Maximum likelihood estimation of phylogeny from DNA sequences when substitutions rates differ over sites. Mol. Biol. Evoln, 10, 1396-1401.
    • (1993) Mol. Biol. Evoln , vol.10 , pp. 1396-1401
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.