-
1
-
-
0035546157
-
Gene expression and molecular evolution
-
Akashi H. 2001. Gene expression and molecular evolution. Curr Opin Genet Dev 11: 660-666.
-
(2001)
Curr. Opin. Genet. Dev.
, vol.11
, pp. 660-666
-
-
Akashi, H.1
-
3
-
-
0035986891
-
Integrating genomics, bioinformatic and classical genetics to study the effects of recombination on genome evolution
-
Birdsell JA. 2002. Integrating genomics, bioinformatic and classical genetics to study the effects of recombination on genome evolution. Mol Biol Evol 19: 1181-1197.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1181-1197
-
-
Birdsell, J.A.1
-
4
-
-
0032931770
-
G+C content variation along and among Saccharomyces cerevisiae chromosomes
-
Bradnam KR, Soighe C, Sharp PM, Wolfe KH. 1999. G+C content variation along and among Saccharomyces cerevisiae chromosomes. Mol Biol Evol 16: 666-675.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 666-675
-
-
Bradnam, K.R.1
Soighe, C.2
Sharp, P.M.3
Wolfe, K.H.4
-
5
-
-
0024299511
-
Transcription-dependent DNA supercoiling in yeast DNA topoisomerase mutants
-
Brill SJ, Sternglanz R. 1988. Transcription-dependent DNA supercoiling in yeast DNA topoisomerase mutants. Cell 54: 403-411.
-
(1988)
Cell
, vol.54
, pp. 403-411
-
-
Brill, S.J.1
Sternglanz, R.2
-
6
-
-
0028359630
-
Conformational information in DNA: Its role in the interaction with DNA topoisomerase I and nucleosomes
-
Caserta M, Camilloni G, Venditti S, Venditti P, Di Mauro E. 1994. Conformational information in DNA: its role in the interaction with DNA topoisomerase I and nucleosomes. J Cell Biochem 55: 93-97.
-
(1994)
J. Cell Biochem.
, vol.55
, pp. 93-97
-
-
Caserta, M.1
Camilloni, G.2
Venditti, S.3
Venditti, P.4
Di Mauro, E.5
-
7
-
-
0030042250
-
Inactivation of topoisomerases affects transcription-dependent chromatin transitions in rDNA but not in a gene transcribed by RNA polymerase II
-
Cavalli G, Bachmann D, Thoma F. 1996. Inactivation of topoisomerases affects transcription-dependent chromatin transitions in rDNA but not in a gene transcribed by RNA polymerase II. EMBOJ 15: 590-597.
-
(1996)
EMBOJ
, vol.15
, pp. 590-597
-
-
Cavalli, G.1
Bachmann, D.2
Thoma, F.3
-
8
-
-
0031439267
-
The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability
-
Chávez S, Aguilera A. 1997. The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability. Genes Dev 11: 3459-3470.
-
(1997)
Genes Dev.
, vol.11
, pp. 3459-3470
-
-
Chávez, S.1
Aguilera, A.2
-
9
-
-
0034329461
-
A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae
-
Chávez S, Beilharz T, Rondón AG, et al. 2000. A protein complex containing Tho2, Hpr1, Mft1 and a novel protein, Thp2, connects transcription elongation with mitotic recombination in Saccharomyces cerevisiae. EMBOJ 19: 5824-5834.
-
(2000)
EMBOJ
, vol.19
, pp. 5824-5834
-
-
Chávez, S.1
Beilharz, T.2
Rondón, A.G.3
-
10
-
-
0034808138
-
Hpr1 is preferentially required for transcription of either long or G+C-rich DNA sequences in Saccharomyces cerevisiae
-
Chávez S, García-Rubio M, Prado F, Aguilera A. 2001. Hpr1 is preferentially required for transcription of either long or G+C-rich DNA sequences in Saccharomyces cerevisiae. Mol Cell Biol 21: 7054-7064.
-
(2001)
Mol. Cell Biol.
, vol.21
, pp. 7054-7064
-
-
Chávez, S.1
García-Rubio, M.2
Prado, F.3
Aguilera, A.4
-
11
-
-
0034666040
-
Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae
-
Coghlan A, Wolfe KH. 2000. Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae. Yeast 16: 1131-1145.
-
(2000)
Yeast
, vol.16
, pp. 1131-1145
-
-
Coghlan, A.1
Wolfe, K.H.2
-
12
-
-
0033780450
-
A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
-
Cohen BA, Mitra RD, Hughes JD, Church GM. 2000. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nature Genet 26: 183-186.
-
(2000)
Nature Genet.
, vol.26
, pp. 183-186
-
-
Cohen, B.A.1
Mitra, R.D.2
Hughes, J.D.3
Church, G.M.4
-
13
-
-
0035827260
-
Coordination between transcription and pre-mRNA processing
-
Cramer P, Srebrow A, Kadener S, et al. 2001. Coordination between transcription and pre-mRNA processing. FEBS Lett 498: 179-182.
-
(2001)
FEBS Lett.
, vol.498
, pp. 179-182
-
-
Cramer, P.1
Srebrow, A.2
Kadener, S.3
-
15
-
-
0032694167
-
A sampling of the yeast proteome
-
Futcher B, Latter GI, Monardo P, McLaughlin CS, Garrels JJ. 1999. A sampling of the yeast proteome. Mol Cell Biol 19: 7357-7368.
-
(1999)
Mol. Cell Biol.
, vol.19
, pp. 7357-7368
-
-
Futcher, B.1
Latter, G.I.2
Monardo, P.3
McLaughlin, C.S.4
Garrels, J.J.5
-
16
-
-
0035156427
-
A new hyperrecombination mutation identifies a novel yeast gene, THP1, connecting transcription elongation with mitotic recombination
-
Gallardo M, Aguilera A. 2001. A new hyperrecombination mutation identifies a novel yeast gene, THP1, connecting transcription elongation with mitotic recombination. Genetics 157: 79-89.
-
(2001)
Genetics
, vol.157
, pp. 79-89
-
-
Gallardo, M.1
Aguilera, A.2
-
17
-
-
0034633494
-
Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae
-
Gerton JL, DeRisi J, Shroff R, et al. 2000. Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae. Proc Natl Acad Sci USA 97: 11 383-11 390.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
-
-
Gerton, J.L.1
DeRisi, J.2
Shroff, R.3
-
18
-
-
0030012885
-
Preference for guanosine at first codon position in highly expressed Escherichia coli genes. A relationship with translational efficiency
-
Gutiérrez G, Márquez L, Marín A. 1996. Preference for guanosine at first codon position in highly expressed Escherichia coli genes. A relationship with translational efficiency. Nucleic Acids Res 24: 2525-2527.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2525-2527
-
-
Gutiérrez, G.1
Márquez, L.2
Marín, A.3
-
19
-
-
0034659241
-
RNA polymerase II and the integration of nuclear events
-
Hirose Y, Manley JL. 2000. RNA polymerase II and the integration of nuclear events. Genes Dev 14: 1415-1429.
-
(2000)
Genes Dev.
, vol.14
, pp. 1415-1429
-
-
Hirose, Y.1
Manley, J.L.2
-
20
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
Holstege FC, Jennings EG, Wyrick JJ, et al. 1998. Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95: 717-728.
-
(1998)
Cell
, vol.95
, pp. 717-728
-
-
Holstege, F.C.1
Jennings, E.G.2
Wyrick, J.J.3
-
21
-
-
0019949369
-
Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes
-
Ikemura T. 1982. Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. J Mol Biol 158: 573-597.
-
(1982)
J. Mol. Biol.
, vol.158
, pp. 573-597
-
-
Ikemura, T.1
-
22
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
Ikemura T. 1985. Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 2: 13-34.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 13-34
-
-
Ikemura, T.1
-
23
-
-
0034653294
-
Analysis of the yeast transcriptome with structural and functional categories: Characterizing highly expressed proteins
-
Jansen R, Gerstein M. 2000. Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins. Nucleic Acids Res 28: 1481-1488.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1481-1488
-
-
Jansen, R.1
Gerstein, M.2
-
24
-
-
0033573938
-
Global response of Saccharomyces cerevisiae to an alkylating agent
-
Jelinsky SA, Samson LD. 1999. Global response of Saccharomyces cerevisiae to an alkylating agent. Proc Natl Acad Sci USA 96: 1486-1491.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 1486-1491
-
-
Jelinsky, S.A.1
Samson, L.D.2
-
25
-
-
0036645687
-
The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability
-
Jimeno S, Rondón AG, Luna R, Aguilera A. 2002. The yeast THO complex and mRNA export factors link RNA metabolism with transcription and genome instability. EMBO J 21: 3526-3535.
-
(2002)
EMBO J.
, vol.21
, pp. 3526-3535
-
-
Jimeno, S.1
Rondón, A.G.2
Luna, R.3
Aguilera, A.4
-
26
-
-
0025939524
-
Positive DNA supercoiling generates a chromatin conformation characteristic of highly active genes
-
Lee MS, Garrard WT. 1991. Positive DNA supercoiling generates a chromatin conformation characteristic of highly active genes. Proc Natl Acad Sci USA 88: 9675-9679.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 9675-9679
-
-
Lee, M.S.1
Garrard, W.T.2
-
27
-
-
0034507632
-
Transcription of eukaryotic protein-coding genes
-
Lee TI, Young RA. 2000. Transcription of eukaryotic protein-coding genes. Ann Rev Genet 34: 77-137.
-
(2000)
Ann. Rev. Genet.
, vol.34
, pp. 77-137
-
-
Lee, T.I.1
Young, R.A.2
-
28
-
-
0026709809
-
Evolution of codon usage patterns: The extent and nature of divergence between Candida albicans and Saccharomyces cerevisiae
-
Lloyd AT, Sharp PM. 1992. Evolution of codon usage patterns: the extent and nature of divergence between Candida albicans and Saccharomyces cerevisiae. Nucleic Acids Res 20: 5289-5295.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5289-5295
-
-
Lloyd, A.T.1
Sharp, P.M.2
-
30
-
-
0024022672
-
Transcription by RNA polymerase II induces changes of DNA topology in yeast
-
Osborne BI, Guarente L. 1988. Transcription by RNA polymerase II induces changes of DNA topology in yeast. Genes Dev 2: 766-772.
-
(1988)
Genes Dev.
, vol.2
, pp. 766-772
-
-
Osborne, B.I.1
Guarente, L.2
-
31
-
-
0034978556
-
Highly expressed genes in yeast evolve slowly
-
Pál C, Papp B, Hurst LD. 2001. Highly expressed genes in yeast evolve slowly. Genetics 158: 927-931.
-
(2001)
Genetics
, vol.158
, pp. 927-931
-
-
Pál, C.1
Papp, B.2
Hurst, L.D.3
-
32
-
-
0032955585
-
Relationship between transcriptional and translational control of gene expression in Saccharomyces cerevisiae: A multiple regression analysis
-
Pavesi A. 1999. Relationship between transcriptional and translational control of gene expression in Saccharomyces cerevisiae: a multiple regression analysis. J Mol Evol 48: 133-141.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 133-141
-
-
Pavesi, A.1
-
33
-
-
0021929387
-
Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence
-
Peck LJ, Wang JC. 1985. Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence. Cell 40: 129-137.
-
(1985)
Cell
, vol.40
, pp. 129-137
-
-
Peck, L.J.1
Wang, J.C.2
-
34
-
-
0025369195
-
Effect of transcription of yeast chromatin on DNA topology in vivo
-
Pederson DS, Morse RH. 1990. Effect of transcription of yeast chromatin on DNA topology in vivo. EMBO J 9: 1873-1881.
-
(1990)
EMBO J.
, vol.9
, pp. 1873-1881
-
-
Pederson, D.S.1
Morse, R.H.2
-
35
-
-
0010173139
-
A novel yeast gene, THO2, is involved in RNA pol II transcription and provides new evidence for transcriptional elongation-associated recombination
-
Piruat JI, Aguilera A. 1998. A novel yeast gene, THO2, is involved in RNA pol II transcription and provides new evidence for transcriptional elongation-associated recombination. EMBO J 17: 4859-4872.
-
(1998)
EMBO J.
, vol.17
, pp. 4859-4872
-
-
Piruat, J.I.1
Aguilera, A.2
-
36
-
-
0030959070
-
Recombination between DNA repeats in yeast hpr1 delta cells is linked to transcription elongation
-
Prado F, Piruat JI, Aguilera A. 1997. Recombination between DNA repeats in yeast hpr1 delta cells is linked to transcription elongation. EMBO J 16: 2826-2835.
-
(1997)
EMBO J.
, vol.16
, pp. 2826-2835
-
-
Prado, F.1
Piruat, J.I.2
Aguilera, A.3
-
37
-
-
0027161465
-
Regional base composition variation along yeast chromosome III: Evolution of chromosome primary structure
-
Sharp PM, Lloyd AT. 1993. Regional base composition variation along yeast chromosome III: evolution of chromosome primary structure. Nucleic Acids Res 21: 179-183.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 179-183
-
-
Sharp, P.M.1
Lloyd, A.T.2
-
38
-
-
0037118052
-
TREX is a conserved complex coupling transcription with messenger RNA export
-
Strässer K, Masuda S, Manson P, et al. 2002. TREX is a conserved complex coupling transcription with messenger RNA export. Nature 417: 304-307.
-
(2002)
Nature
, vol.417
, pp. 304-307
-
-
Strässer, K.1
Masuda, S.2
Manson, P.3
-
39
-
-
0029664913
-
The [(G/C)3NN]n motif: A common DNA repeat that excludes nucleosomes
-
Wang YH, Griffith JD. 1996. The [(G/C)3NN]n motif: a common DNA repeat that excludes nucleosomes. Proc Natl Acad Sci USA 93: 8863-8867.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 8863-8867
-
-
Wang, Y.H.1
Griffith, J.D.2
-
40
-
-
0031453850
-
Genome-wide expression monitoring in Saccharomyces cerevisiae
-
Wodicka L, Dong H, Mittmann M, Ho MH, Lockhart DJ. 1997. Genome-wide expression monitoring in Saccharomyces cerevisiae. Nature Biotechnol 15: 1359-1367.
-
(1997)
Nature Biotechnol.
, vol.15
, pp. 1359-1367
-
-
Wodicka, L.1
Dong, H.2
Mittmann, M.3
Ho, M.H.4
Lockhart, D.J.5
-
41
-
-
0033604609
-
Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast
-
Wyrick JJ, Holstege FC, Jennings EG, et al. 1999. Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast. Nature 402: 418-421.
-
(1999)
Nature
, vol.402
, pp. 418-421
-
-
Wyrick, J.J.1
Holstege, F.C.2
Jennings, E.G.3
-
42
-
-
0036532201
-
Deciphering gene expression regulatory networks
-
Wyrick JJ, Young, RA. 2002. Deciphering gene expression regulatory networks. Curr Opin Genet Dev 12: 130-136.
-
(2002)
Curr. Opin. Genet. Dev.
, vol.12
, pp. 130-136
-
-
Wyrick, J.J.1
Young, R.A.2
-
43
-
-
0035827261
-
Nuclear export of mRNA
-
Zenklusen D, Stutz F. 2001. Nuclear export of mRNA. FEBS Lett 498: 150-156.
-
(2001)
FEBS Lett.
, vol.498
, pp. 150-156
-
-
Zenklusen, D.1
Stutz, F.2
|