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Volumn 16, Issue 5, 1999, Pages 666-675

G + C content variation along and among Saccharomyces cerevisiae chromosomes

Author keywords

Chromosome; G+C content; Genome; Isochore; Yeast

Indexed keywords

ARTICLE; BASE PAIRING; DNA SEQUENCE; FUNGAL GENETICS; GENE SEQUENCE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; SACCHAROMYCES CEREVISIAE;

EID: 0032931770     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026149     Document Type: Article
Times cited : (43)

References (46)
  • 1
    • 0028351792 scopus 로고
    • Sequence comparison of the ARG4 chromosomal regions from the two related yeasts, Saccharomyces cerevisiae and Saccharomyces douglasii
    • ADJIRI, A., R. CHANET, C. MEZARD, and F. FABRE. 1994. Sequence comparison of the ARG4 chromosomal regions from the two related yeasts, Saccharomyces cerevisiae and Saccharomyces douglasii. Yeast 10:309-317.
    • (1994) Yeast , vol.10 , pp. 309-317
    • Adjiri, A.1    Chanet, R.2    Mezard, C.3    Fabre, F.4
  • 2
    • 0031010660 scopus 로고    scopus 로고
    • Clustering of meiotic double-strand breaks on yeast chromosome III
    • USA
    • BAUDAT, F., and A. NICOLAS. 1997. Clustering of meiotic double-strand breaks on yeast chromosome III. Proc. Natl. Acad. Sci. USA 94:5213-5218.
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 5213-5218
    • Baudat, F.1    Nicolas, A.2
  • 3
    • 0020024572 scopus 로고
    • Codon selection in yeast
    • BENNETZEN, J. L., and B. D. HALL. 1982. Codon selection in yeast. J. Biol. Chem. 257:3026-3031.
    • (1982) J. Biol. Chem. , vol.257 , pp. 3026-3031
    • Bennetzen, J.L.1    Hall, B.D.2
  • 4
    • 0029587471 scopus 로고
    • The human genome: Organization and evolutionary history
    • BERNARDI, G. 1995. The human genome: organization and evolutionary history. Annu. Rev. Genet. 29:445-476.
    • (1995) Annu. Rev. Genet. , vol.29 , pp. 445-476
    • Bernardi, G.1
  • 5
    • 8544270084 scopus 로고    scopus 로고
    • The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII
    • BOWMAN, S., C. CHURCHER, K. BADCOCK et al. (22 co-authors). 1997. The nucleotide sequence of Saccharomyces cerevisiae chromosome XIII. Nature 387:90-93.
    • (1997) Nature , vol.387 , pp. 90-93
    • Bowman, S.1    Churcher, C.2    Badcock, K.3
  • 6
    • 0023803187 scopus 로고
    • Different base/base mispairs are corrected with different efficiencies and specificities in monkey kidney cells
    • BROWN, T. C., and J. JIRICNY. 1988. Different base/base mispairs are corrected with different efficiencies and specificities in monkey kidney cells. Cell 54:705-711.
    • (1988) Cell , vol.54 , pp. 705-711
    • Brown, T.C.1    Jiricny, J.2
  • 7
    • 0029054927 scopus 로고
    • The nucleotide sequence of chromosome I from Saccharomyces cerevisiae
    • USA
    • BUSSEY, H., D. B. KABACK, W. ZHONG et al. (13 co-authors). 1995. The nucleotide sequence of chromosome I from Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 92: 3809-3813.
    • (1995) Proc. Natl. Acad. Sci. , vol.92 , pp. 3809-3813
    • Bussey, H.1    Kaback, D.B.2    Zhong, W.3
  • 8
    • 8544273658 scopus 로고    scopus 로고
    • The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI
    • BUSSEY, H., R. K. STORMS, A. AHMED et al. (89 co-authors). 1997. The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Nature 387:103-105.
    • (1997) Nature , vol.387 , pp. 103-105
    • Bussey, H.1    Storms, R.K.2    Ahmed, A.3
  • 10
    • 0031858914 scopus 로고    scopus 로고
    • SGD: Saccharomyces genome database
    • CHERRY, J. M., C. ADLER, C. BALL et al. (12 co-authors). 1998. SGD: Saccharomyces Genome Database. Nucleic Acids Res. 26:73-79.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 73-79
    • Cherry, J.M.1    Adler, C.2    Ball, C.3
  • 11
    • 8544273659 scopus 로고    scopus 로고
    • The nucleotide sequence of Saccharomyces cerevisiae chromosome IX
    • CHURCHER, C., S. BOWMAN, K. BADCOCK et al. (27 co-authors). 1997. The nucleotide sequence of Saccharomyces cerevisiae chromosome IX. Nature 387:84-87.
    • (1997) Nature , vol.387 , pp. 84-87
    • Churcher, C.1    Bowman, S.2    Badcock, K.3
  • 12
    • 8544272476 scopus 로고    scopus 로고
    • The nucleotide sequence of Saccharomyces cerevisiae chromosome V
    • DIETRICH, F. S., J. MULLIGAN, K. HENNESSY et al. (39 co-authors). 1997. The nucleotide sequence of Saccharomyces cerevisiae chromosome V. Nature 387:78-81.
    • (1997) Nature , vol.387 , pp. 78-81
    • Dietrich, F.S.1    Mulligan, J.2    Hennessy, K.3
  • 13
    • 0029894792 scopus 로고    scopus 로고
    • The yeast genome project: What did we learn?
    • DUJON, B. 1996. The yeast genome project: what did we learn? Trends Genet. 12:263-270.
    • (1996) Trends Genet. , vol.12 , pp. 263-270
    • Dujon, B.1
  • 14
    • 8544251255 scopus 로고    scopus 로고
    • The nucleotide sequence of Saccharomyces cerevisiae chromosome XV
    • DUJON, B., K. ALBERMANN, M. ALDEA et al. (97 co-authors). 1997. The nucleotide sequence of Saccharomyces cerevisiae chromosome XV. Nature 387(Suppl.):98-102.
    • (1997) Nature , vol.387 , Issue.SUPPL. , pp. 98-102
    • Dujon, B.1    Albermann, K.2    Aldea, M.3
  • 15
    • 0028301199 scopus 로고
    • Complete DNA sequence of yeast chromosome XI
    • DUJON, B., D. ALEXANDRAKI, B. ANDRE et al. (108 co-authors). 1994. Complete DNA sequence of yeast chromosome XI. Nature 369:371-378.
    • (1994) Nature , vol.369 , pp. 371-378
    • Dujon, B.1    Alexandraki, D.2    Andre, B.3
  • 16
    • 0026787672 scopus 로고
    • The role of DNA replication and isochores in generating mutation and silent substitution rate variance in mammals
    • EYRE-WALKER, A. 1992. The role of DNA replication and isochores in generating mutation and silent substitution rate variance in mammals. Genet. Res. 60:61-67.
    • (1992) Genet. Res. , vol.60 , pp. 61-67
    • Eyre-Walker, A.1
  • 17
    • 0028586779 scopus 로고
    • Complete DNA sequence of yeast chromosome II
    • FELDMANN, H., M. AIGLE, G. ALJINOVIC et al. (97 co-authors). 1994. Complete DNA sequence of yeast chromosome II. EMBO J. 13:5795-5809.
    • (1994) EMBO J. , vol.13 , pp. 5795-5809
    • Feldmann, H.1    Aigle, M.2    Aljinovic, G.3
  • 18
    • 0023192595 scopus 로고
    • Correlation between molecular clock ticking, codon usage fidelity of DNA repair, chromosome banding and chromatin compactness in germline cells
    • FILIPSKI, J. 1987. Correlation between molecular clock ticking, codon usage fidelity of DNA repair, chromosome banding and chromatin compactness in germline cells. FEBS Lett. 217:184-186.
    • (1987) FEBS Lett. , vol.217 , pp. 184-186
    • Filipski, J.1
  • 19
    • 9244222739 scopus 로고    scopus 로고
    • Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X
    • GALIBERT, F., D. ALEXANDRAKI, A. BAUR et al. (57 co-authors). 1996. Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X. EMBO J. 15:2031-2049.
    • (1996) EMBO J. , vol.15 , pp. 2031-2049
    • Galibert, F.1    Alexandraki, D.2    Baur, A.3
  • 20
    • 0031589946 scopus 로고    scopus 로고
    • The yeast genome directory
    • GOFFEAU, A., R. AERT, M. L. AGOSTINI-CARBONE et al. (633 co-authors). 1997. The Yeast Genome Directory. Nature 387(Suppl.):5-105.
    • (1997) Nature , vol.387 , Issue.SUPPL. , pp. 5-105
    • Goffeau, A.1    Aert, R.2    Agostini-Carbone, M.L.3
  • 21
    • 0028324520 scopus 로고
    • Saccharomyces carlsbergensis contains two functional MET2 alleles similar to homologues from S. Cerevisiae and S. monacensis
    • HANSEN, J., and M. C. KIELLAND-BRANDT. 1994. Saccharomyces carlsbergensis contains two functional MET2 alleles similar to homologues from S. cerevisiae and S. monacensis. Gene 140:33-40.
    • (1994) Gene , vol.140 , pp. 33-40
    • Hansen, J.1    Kielland-Brandt, M.C.2
  • 22
    • 0019824131 scopus 로고
    • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system
    • IKEMURA, T. 1981. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: a proposal for a synonymous codon choice that is optimal for the E. coli translational system. J. Mol. Biol. 151:389-409.
    • (1981) J. Mol. Biol. , vol.151 , pp. 389-409
    • Ikemura, T.1
  • 23
    • 0025744599 scopus 로고
    • Evident diversity of codon usage patterns of human genes with respect to chromosome banding patterns and chromosome numbers; relation between nucleotide sequence data and cytogenetic data
    • IKEMURA, T., and K. WADA. 1991. Evident diversity of codon usage patterns of human genes with respect to chromosome banding patterns and chromosome numbers; relation between nucleotide sequence data and cytogenetic data. Nucleic Acids Res. 19:4333-4339.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4333-4339
    • Ikemura, T.1    Wada, K.2
  • 24
    • 8544263798 scopus 로고    scopus 로고
    • The nucleotide sequence of Saccharomyces cerevisiae chromosome IV
    • JACQ, C., J. ALT-MORBE, B. ANDRE et al. (136 co-authors). 1997. The nucleotide sequence of Saccharomyces cerevisiae chromosome IV. Nature 387:75-78.
    • (1997) Nature , vol.387 , pp. 75-78
    • Jacq, C.1    Alt-Morbe, J.2    Andre, B.3
  • 25
    • 0028073797 scopus 로고
    • Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII
    • JOHNSTON, M., S. ANDREWS, R. BRINKMAN et al. (35 co-authors). 1994. Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII. Science 265:2077-2082.
    • (1994) Science , vol.265 , pp. 2077-2082
    • Johnston, M.1    Andrews, S.2    Brinkman, R.3
  • 26
    • 8544265296 scopus 로고    scopus 로고
    • The nucleotide sequence of Saccharomyces cerevisiae chromosome XII
    • JOHNSTON, M., L. HILLIER, L. RILES et al. (57 co-authors). 1997. The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Nature 387:87-90.
    • (1997) Nature , vol.387 , pp. 87-90
    • Johnston, M.1    Hillier, L.2    Riles, L.3
  • 27
    • 0030886877 scopus 로고    scopus 로고
    • Systematic base composition variation around the genome of Mycoplasma genitalium, but not Mycoplasma pneumoniae
    • KERR, A. R. W., J. F. PEDEN, and P. M. SHARP. 1997. Systematic base composition variation around the genome of Mycoplasma genitalium, but not Mycoplasma pneumoniae. Mol. Microbiol. 25:1177-1179.
    • (1997) Mol. Microbiol. , vol.25 , pp. 1177-1179
    • Kerr, A.R.W.1    Peden, J.F.2    Sharp, P.M.3
  • 28
    • 84975862989 scopus 로고    scopus 로고
    • Prokaryotic genome evolution as assessed by multivariate analysis of codon usage patterns
    • MCINERNEY, J. O. 1997. Prokaryotic genome evolution as assessed by multivariate analysis of codon usage patterns. Microb. Comp. Genom. 2:1-10.
    • (1997) Microb. Comp. Genom. , vol.2 , pp. 1-10
    • McInerney, J.O.1
  • 29
    • 0026761411 scopus 로고
    • Genetic and physical maps of Saccharomyces cerevisiae, edition 11
    • edition 11
    • MORTIMER, R. K., C. R. CONTOPOULOU, and J. S. KING. 1992. Genetic and physical maps of Saccharomyces cerevisiae, edition 11. Yeast 8:817-902.
    • (1992) Yeast , vol.8 , pp. 817-902
    • Mortimer, R.K.1    Contopoulou, C.R.2    King, J.S.3
  • 30
    • 0022504637 scopus 로고
    • Genealogy of principal strains of the yeast genetic stock center
    • MORTIMER, R. K., and J. R. JOHNSTON. 1986. Genealogy of principal strains of the yeast genetic stock center. Genetics 113:35-43.
    • (1986) Genetics , vol.113 , pp. 35-43
    • Mortimer, R.K.1    Johnston, J.R.2
  • 31
    • 0029016299 scopus 로고
    • Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae
    • MURAKAMI, Y., M. NAITOU, H. HAGIWARA et al. (13 co-authors). 1995. Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae. Nat. Genet. 10:261-268.
    • (1995) Nat. Genet. , vol.10 , pp. 261-268
    • Murakami, Y.1    Naitou, M.2    Hagiwara, H.3
  • 32
    • 0029031109 scopus 로고
    • Size is important, but
    • OLIVER, S. 1995. Size is important, but. Nat. Genet. 10:253-254.
    • (1995) Nat. Genet. , vol.10 , pp. 253-254
    • Oliver, S.1
  • 33
    • 0026572003 scopus 로고
    • The complete DNA sequence of yeast chromosome III
    • OLIVER, S. G., Q. J. VAN DER AART, M. L. AGOSTONI-CARBONE et al. (147 co-authors). 1992. The complete DNA sequence of yeast chromosome III. Nature 357:38-46.
    • (1992) Nature , vol.357 , pp. 38-46
    • Oliver, S.G.1    Van Der Aart, Q.J.2    Agostoni-Carbone, M.L.3
  • 34
    • 8544270083 scopus 로고    scopus 로고
    • The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications
    • PHILIPPSEN, P., K. KLEINE, R. POHLMANN et al. (88 co-authors). 1997. The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications. Nature 387(Suppl.):93-98.
    • (1997) Nature , vol.387 , Issue.SUPPL. , pp. 93-98
    • Philippsen, P.1    Kleine, K.2    Pohlmann, R.3
  • 35
    • 0032516073 scopus 로고    scopus 로고
    • Extent of genomic rearrangement after genome duplication in yeast
    • USA
    • SEOIGHE, C., and K. H. WOLFE. 1998. Extent of genomic rearrangement after genome duplication in yeast. Proc. Natl. Acad. Sci. USA 95:4447-4452.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 4447-4452
    • Seoighe, C.1    Wolfe, K.H.2
  • 37
    • 0025988205 scopus 로고
    • Synonymous codon usage in Saccharomyces cerevisiae
    • SHARP, P. M., and E. COWE. 1991. Synonymous codon usage in Saccharomyces cerevisiae. Yeast 7:657-678.
    • (1991) Yeast , vol.7 , pp. 657-678
    • Sharp, P.M.1    Cowe, E.2
  • 38
    • 0027161465 scopus 로고
    • Regional base composition variation along yeast chromosome III: Evolution of chromosome primary structure
    • SHARP, P. M., and A. T. LLOYD. 1993. Regional base composition variation along yeast chromosome III: evolution of chromosome primary structure. Nucleic Acids Res. 21:179-183.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 179-183
    • Sharp, P.M.1    Lloyd, A.T.2
  • 40
    • 0023046874 scopus 로고
    • Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
    • SHARP, P. M., T. M. TUOHY, and K. R. MOSURSKI. 1986. Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. Nucleic Acids Res. 14:5125-5143.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 5125-5143
    • Sharp, P.M.1    Tuohy, T.M.2    Mosurski, K.R.3
  • 41
    • 8544241709 scopus 로고    scopus 로고
    • The nucleotide sequence of Saccharomyces cerevisiae chromosome VII
    • TETTELIN, H., M. L. AGOSTINI-CARBONE, K. ALBERMANN et al. (115 co-authors). 1997. The nucleotide sequence of Saccharomyces cerevisiae chromosome VII. Nature 387:81-84.
    • (1997) Nature , vol.387 , pp. 81-84
    • Tettelin, H.1    Agostini-Carbone, M.L.2    Albermann, K.3
  • 42
    • 0032483372 scopus 로고    scopus 로고
    • Segregation of transcription and replication sites into higher order domains
    • WEI, X., J. SAMARABANDU, R. S. DEVDHAR, A. J. SIEGEL, R. ACHARYA, and R. BEREZNEY. 1998. Segregation of transcription and replication sites into higher order domains. Science 281:1502-1506.
    • (1998) Science , vol.281 , pp. 1502-1506
    • Wei, X.1    Samarabandu, J.2    Devdhar, R.S.3    Siegel, A.J.4    Acharya, R.5    Berezney, R.6
  • 43
    • 0028932055 scopus 로고
    • Mutations affecting donor preference during mating type interconversion in Saccharomyces cerevisiae
    • WEILER, K. S., L. SZETO, and J. R. BROACH. 1995. Mutations affecting donor preference during mating type interconversion in Saccharomyces cerevisiae. Genetics 139:1495-1510.
    • (1995) Genetics , vol.139 , pp. 1495-1510
    • Weiler, K.S.1    Szeto, L.2    Broach, J.R.3
  • 44
    • 0032555671 scopus 로고    scopus 로고
    • Direct allelic variation scanning of the yeast genome
    • WINZELER, E. A., D. R. RICHARDS, A. R. CONWAY et al. (11 co-authors). 1998. Direct allelic variation scanning of the yeast genome. Science 281:1194-1197.
    • (1998) Science , vol.281 , pp. 1194-1197
    • Winzeler, E.A.1    Richards, D.R.2    Conway, A.R.3
  • 45
    • 0024497416 scopus 로고
    • Mutation rates differ among regions of the mammalian genome
    • WOLFE, K. H., P. M. SHARP, and W. H. LI. 1989. Mutation rates differ among regions of the mammalian genome. Nature 337:283-285.
    • (1989) Nature , vol.337 , pp. 283-285
    • Wolfe, K.H.1    Sharp, P.M.2    Li, W.H.3
  • 46
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • WOLFE, K. H., and D. C. SHIELDS. 1997. Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387:708-713.
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2


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