-
1
-
-
0028832822
-
Understanding, improving and using Green Fluorescent Proteins
-
Cubitt AB, Heim R, Adams SR, Boyd AE, Gross LA, Tsien RY. Understanding, improving and using Green Fluorescent Proteins. Trends Biochem Sci 1995;20:448-455.
-
(1995)
Trends Biochem Sci
, vol.20
, pp. 448-455
-
-
Cubitt, A.B.1
Heim, R.2
Adams, S.R.3
Boyd, A.E.4
Gross, L.A.5
Tsien, R.Y.6
-
2
-
-
0029847806
-
Crystal structure of the Aequorea Victoria Green Fluorescent Protein
-
Ormö M, Cubitt AB, Kallio K, Gross LA, Tsien RY, Remington SJ. Crystal structure of the Aequorea Victoria Green Fluorescent Protein. Science 1996;273:1392-1395.
-
(1996)
Science
, vol.273
, pp. 1392-1395
-
-
Ormö, M.1
Cubitt, A.B.2
Kallio, K.3
Gross, L.A.4
Tsien, R.Y.5
Remington, S.J.6
-
3
-
-
0029780351
-
The molecular structure of Green Fluorescent Protein
-
Yang F, Moss LG, Phillips GN Jr. The molecular structure of Green Fluorescent Protein. Nat Biotech 1996;14:1246-1251.
-
(1996)
Nat Biotech
, vol.14
, pp. 1246-1251
-
-
Yang, F.1
Moss, L.G.2
Phillips G.N., Jr.3
-
4
-
-
0030953638
-
Structural basis for dual excitation and photoisomerization of the Aequorea Victoria Green Fluorescent Protein
-
Brejc K, Sixma TK, Kitts PA, Kain SR, Tsien RY, Ormö M, Remington SJ. Structural basis for dual excitation and photoisomerization of the Aequorea Victoria Green Fluorescent Protein. Proc Natl Acad Sci USA 1997;94:2306-2311.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 2306-2311
-
-
Brejc, K.1
Sixma, T.K.2
Kitts, P.A.3
Kain, S.R.4
Tsien, R.Y.5
Ormö, M.6
Remington, S.J.7
-
5
-
-
0031134224
-
The structural basis for spectral variations in Green Fluorescent Protein
-
Palm GJ, Zdanov A, Gaitanaris GA, Stauber R, Pavlakis GN, Wlodawer A. The structural basis for spectral variations in Green Fluorescent Protein. Nat Struct Biol 1997;4:361-365.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 361-365
-
-
Palm, G.J.1
Zdanov, A.2
Gaitanaris, G.A.3
Stauber, R.4
Pavlakis, G.N.5
Wlodawer, A.6
-
6
-
-
0033609034
-
Structural and spectral response of Green Fluorescent Protein variants to changes in pH
-
Elsliger MA, Wachter RM, Hanson GT, Kallio K, Remington SJ. Structural and spectral response of Green Fluorescent Protein variants to changes in pH. Biochemistry 1999;38:5296-5301.
-
(1999)
Biochemistry
, vol.38
, pp. 5296-5301
-
-
Elsliger, M.A.1
Wachter, R.M.2
Hanson, G.T.3
Kallio, K.4
Remington, S.J.5
-
7
-
-
0033065308
-
Shedding light on the dark and weakly fluorescent states of Green Fluorescent Proteins
-
Weber W, Helms V, McCammon JA, Langhoff PW. Shedding light on the dark and weakly fluorescent states of Green Fluorescent Proteins. Proc Natl Acad Sci USA 1999;96:6177-6182.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 6177-6182
-
-
Weber, W.1
Helms, V.2
McCammon, J.A.3
Langhoff, P.W.4
-
8
-
-
0031587905
-
Protonation effects on the chromophore of Green Fluorescent Protein. Quantum chemical study of the absorption spectrum
-
Voityuk AA, Michel-Beyerle ME, Rosch N. Protonation effects on the chromophore of Green Fluorescent Protein. Quantum chemical study of the absorption spectrum. Chem Phys Lett 1997;272:162-167.
-
(1997)
Chem Phys Lett
, vol.272
, pp. 162-167
-
-
Voityuk, A.A.1
Michel-Beyerle, M.E.2
Rosch, N.3
-
9
-
-
0031663369
-
The Green Fluorescent Protein
-
Tsien RY. The Green Fluorescent Protein. Annu Rev Biochem 1998;67:509-544.
-
(1998)
Annu Rev Biochem
, vol.67
, pp. 509-544
-
-
Tsien, R.Y.1
-
10
-
-
0032532156
-
Structural basis of spectral shifts in the yellow-emission variants of Green Fluorescent Protein
-
Wachter RM, Elsliger MA, Kallio K, Hanson GT, Remington SJ. Structural basis of spectral shifts in the yellow-emission variants of Green Fluorescent Protein. Structure 1998;6:1267-1277.
-
(1998)
Structure
, vol.6
, pp. 1267-1277
-
-
Wachter, R.M.1
Elsliger, M.A.2
Kallio, K.3
Hanson, G.T.4
Remington, S.J.5
-
11
-
-
0001350436
-
Effects of threonine 203 replacements on excited-state dynamics and fluorescence properties of the Green Fluorescent Protein (GFP)
-
Kummer AD, Wiehler J, Rehaber H, Kompa C, Steipe B, Michel-Beyerle ME. Effects of threonine 203 replacements on excited-state dynamics and fluorescence properties of the Green Fluorescent Protein (GFP). J Phys Chem B 2000;104:4791-4798.
-
(2000)
J Phys Chem B
, vol.104
, pp. 4791-4798
-
-
Kummer, A.D.1
Wiehler, J.2
Rehaber, H.3
Kompa, C.4
Steipe, B.5
Michel-Beyerle, M.E.6
-
12
-
-
0032398645
-
Dramatic reduction in fluorescence quantum yield in mutants of Green Fluorescent Protein due to fast internal conversion
-
Kummer AD, Kompa C, Lossau H, Pollinger-Dammer F, Michel- Beyerle ME, Silva CM, Bylina EJ, Coleman WJ, Yang MM, Youvan DC. Dramatic reduction in fluorescence quantum yield in mutants of Green Fluorescent Protein due to fast internal conversion. Chem Phys 1998;237:183-193.
-
(1998)
Chem Phys
, vol.237
, pp. 183-193
-
-
Kummer, A.D.1
Kompa, C.2
Lossau, H.3
Pollinger-Dammer, F.4
Michel-Beyerle, M.E.5
Silva, C.M.6
Bylina, E.J.7
Coleman, W.J.8
Yang, M.M.9
Youvan, D.C.10
-
13
-
-
0003712431
-
Amber 6.0
-
Case D, Pearlman D, Caldwell J, Cheatham T III, Ross W, Simmerling C, Darden T, Merz K, Stanton R, Cheng A, Vincent J, Crowley M, Tsui V, Radmer R, Duan Y, Pitera J, Massova I, Seibel G, Singh U, Weiner P, Kollman PA. Amber 6.0. 1999.
-
(1999)
-
-
Case, D.1
Pearlman, D.2
Caldwell, J.3
Cheatham T. III4
Ross, W.5
Simmerling, C.6
Darden, T.7
Merz, K.8
Stanton, R.9
Cheng, A.10
Vincent, J.11
Crowley, M.12
Tsui, V.13
Radmer, R.14
Duan, Y.15
Pitera, J.16
Massova, I.17
Seibel, G.18
Singh, U.19
Weiner, P.20
Kollman, P.A.21
more..
-
14
-
-
0035851459
-
Green Fluorescent Proteins as optically controllable elements in bioelectronics
-
Cinelli R, AG, Pellegrini V, Ferrari A, Faraci P, Nifosi R, Tyagi M, Giacca M, Beltram F. Green Fluorescent Proteins as optically controllable elements in bioelectronics. Appl Phys Lett 2001;79:3353-3355.
-
(2001)
Appl Phys Lett
, vol.79
, pp. 3353-3355
-
-
Cinelli, R.1
Pellegrini, V.2
Ferrari, A.3
Faraci, P.4
Nifosi, R.5
Tyagi, M.6
Giacca, M.7
Beltram, F.8
-
15
-
-
0030832226
-
On/off blinking and switching behaviour of single molecules of Green Fluorescent Protein
-
Dickson RM, Cubitt AB, Tsien RY, Moerner WE. On/off blinking and switching behaviour of single molecules of Green Fluorescent Protein. Nature 1997;388:355-358.
-
(1997)
Nature
, vol.388
, pp. 355-358
-
-
Dickson, R.M.1
Cubitt, A.B.2
Tsien, R.Y.3
Moerner, W.E.4
-
17
-
-
0037142745
-
Green Fluorescent Proteins: Empirical force field for the neutral and deprotonated forms of the chromophore. Molecular dynamics simulations of the Wild Type and S65T mutant
-
Reuter N, Lin H, Thiel W. Green Fluorescent Proteins: Empirical force field for the neutral and deprotonated forms of the chromophore. Molecular dynamics simulations of the Wild Type and S65T mutant. J Phys Chem B 2002;106:6310-6321.
-
(2002)
J Phys Chem B
, vol.106
, pp. 6310-6321
-
-
Reuter, N.1
Lin, H.2
Thiel, W.3
-
18
-
-
0032506222
-
Dynamics of fluorescence fluctuations in Green Fluorescent Protein observed by fluorescence correlation spectroscopy
-
Haupts U, Maiti S, Schwille P, Webb WW. Dynamics of fluorescence fluctuations in Green Fluorescent Protein observed by fluorescence correlation spectroscopy. Proc Natl Acad Sci USA 1998;95:13573-13578.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 13573-13578
-
-
Haupts, U.1
Maiti, S.2
Schwille, P.3
Webb, W.W.4
-
19
-
-
0034602653
-
Fluorescence correlation spectroscopy reveals fast optical excitation-driven intramolecular dynamics of Yellow Fluorescent Proteins
-
Schwille P, Kummer S, Heikal AA, Moerner WE, Webb WW. Fluorescence correlation spectroscopy reveals fast optical excitation-driven intramolecular dynamics of Yellow Fluorescent Proteins. Proc Natl Acad Sci USA 2000;97:151-156.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 151-156
-
-
Schwille, P.1
Kummer, S.2
Heikal, A.A.3
Moerner, W.E.4
Webb, W.W.5
-
20
-
-
0034691034
-
Real-time light driven dynamics of the fluorescence emission in single Green Fluorescent Protein molecules
-
Garcia-Parajo MF, Segers-Nolten GM, Veerman JA, Greve J, van Hulst NF. Real-time light driven dynamics of the fluorescence emission in single Green Fluorescent Protein molecules. Proc Natl Acad Sci USA 2000;97:7237-7242.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 7237-7242
-
-
Garcia-Parajo, M.F.1
Segers-Nolten, G.M.2
Veerman, J.A.3
Greve, J.4
Van Hulst, N.F.5
-
21
-
-
0001218498
-
The fluorescence dynamics of single molecules of Green Fluorescent Protein
-
Peterman E: JG, Brasselet S, Moerner WE. The fluorescence dynamics of single molecules of Green Fluorescent Protein. J Phys Chem A 1999;103:10553-10560.
-
(1999)
J Phys Chem A
, vol.103
, pp. 10553-10560
-
-
Peterman, E.1
Brasselet, S.2
Moerner, W.E.3
-
22
-
-
0141974612
-
-
Accelrys Inc.
-
InsightII, Accelrys Inc. 2001.
-
(2001)
InsightII
-
-
-
23
-
-
0033954256
-
The Protein Data Bank
-
Berman H, Westbrook J, Feng Z, Gilliland G, Bhat T, Weissig H, Shindyalov I, Bourne P. The Protein Data Bank. Nucleic Acids Res 2000;28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.5
Weissig, H.6
Shindyalov, I.7
Bourne, P.8
-
24
-
-
0032374089
-
Characterization of the photoconversion of Green Fluorescent Protein with FTIR spectroscopy
-
van Thor JJ, Pierik AJ, Nugteren-Roodzant I, Xie A, Hellingwerf KJ. Characterization of the photoconversion of Green Fluorescent Protein with FTIR spectroscopy. Biochemistry 1998;37:16915-16921.
-
(1998)
Biochemistry
, vol.37
, pp. 16915-16921
-
-
Van Thor, J.J.1
Pierik, A.J.2
Nugteren-Roodzant, I.3
Xie, A.4
Hellingwerf, K.J.5
-
25
-
-
0037066871
-
Chromophore protonation states and the proton shuttle mechanism in Green Fluorescent Protein: Inferences drawn from ab initio theoretical studies of chemical structures and vibrational spectra
-
Yoo H, Boatz JA, Helms V, McCammon JA, Langhoff PW. Chromophore protonation states and the proton shuttle mechanism in Green Fluorescent Protein: inferences drawn from ab initio theoretical studies of chemical structures and vibrational spectra. J Phys Chem B 2001;105:2850-2857.
-
(2001)
J Phys Chem B
, vol.105
, pp. 2850-2857
-
-
Yoo, H.1
Boatz, J.A.2
Helms, V.3
McCammon, J.A.4
Langhoff, P.W.5
-
26
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell AD Jr, Bashford D, Bellott RL, Dunbrack RL Jr, Evanseck JD, Field MJ, Fischer S, Gao J, Guo H, Ha S, Joseph- McCarthy D, Kuchnir L, Kuczera K, Lau F. TK, Mattos C, Michnick S, Ngo T, Nguyen DT, Prodhom B, Reiher WE III, Roux B, Schlenkrich M, Smith JC, Stote R, Straub J, Watanabe M, Wiorkiewiez-Kuczera J, Yin D, Karplus M. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J Phys Chem B 1998;102:3586-3616.
-
(1998)
J Phys Chem B
, vol.102
, pp. 3586-3616
-
-
MacKerell A.D., Jr.1
Bashford, D.2
Bellott, R.L.3
Dunbrack R.L., Jr.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-McCarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.Tk.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher W.E. III20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewiez-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
27
-
-
3042524904
-
A well-behaved electrostatic potential based method using charge restraints for determining atom-centered charges
-
Bayly C, Cieplak P, Cornell W, Kollman P. A well-behaved electrostatic potential based method using charge restraints for determining atom-centered charges. J Phys Chem 1993;97:10269-10280.
-
(1993)
J Phys Chem
, vol.97
, pp. 10269-10280
-
-
Bayly, C.1
Cieplak, P.2
Cornell, W.3
Kollman, P.4
-
28
-
-
7044239742
-
Free energy calculations: Applications to chemical and biochemical phenomena
-
Kollman PA. Free energy calculations: applications to chemical and biochemical phenomena. Chem Rev 1993;93:2395-2417.
-
(1993)
Chem Rev
, vol.93
, pp. 2395-2417
-
-
Kollman, P.A.1
-
30
-
-
0032828143
-
Molecular basis for pH sensitivity and proton transfer in Green Fluorescent Protein: Protonation and conformational substates from electrostatic calculations
-
Scharnagl C, Raupp-Kossmann R, Fischer SF. Molecular basis for pH sensitivity and proton transfer in Green Fluorescent Protein: protonation and conformational substates from electrostatic calculations. Biophys J 1999;77:1839-1857.
-
(1999)
Biophys J
, vol.77
, pp. 1839-1857
-
-
Scharnagl, C.1
Raupp-Kossmann, R.2
Fischer, S.F.3
-
31
-
-
0037205576
-
Excited-state dynamics in the Enhanced Green Fluorescent Protein mutant probed by picosecond time-resolved single photon counting spectroscopy
-
Cotlet M, Hofkens J, Maus M, Gensch T, Van der Auweraer M, Michiels J, Dirix G, Van Guyse M, Vanderleyden J, Visser AJWG, De Schryver FC. Excited-state dynamics in the Enhanced Green Fluorescent Protein mutant probed by picosecond time-resolved single photon counting spectroscopy. J Phys Chem B 2001;105:4999-5006.
-
(2001)
J Phys Chem B
, vol.105
, pp. 4999-5006
-
-
Cotlet, M.1
Hofkens, J.2
Maus, M.3
Gensch, T.4
Van der Auweraer, M.5
Michiels, J.6
Dirix, G.7
Van Guyse, M.8
Vanderleyden, J.9
Visser, A.J.W.G.10
De Schryver, F.C.11
-
32
-
-
0037456453
-
Photoreversible dark state in a tristable green fluorescent protein variant
-
Nifosi R, Ferrari A, Arcangeli C, Tozzini V, Pellegrini V, Beltram F. Photoreversible dark state in a tristable green fluorescent protein variant. J Phys Chem B 2003;107:1679-1684.
-
(2003)
J Phys Chem B
, vol.107
, pp. 1679-1684
-
-
Nifosi, R.1
Ferrari, A.2
Arcangeli, C.3
Tozzini, V.4
Pellegrini, V.5
Beltram, F.6
-
33
-
-
0032607587
-
Understanding structure-function relationships in the Aequorea Victoria Green Fluorescent Protein
-
Cubitt AB, Woollenweber LA, Heim R. Understanding structure-function relationships in the Aequorea Victoria Green Fluorescent Protein. Methods Cell Biol 1999;58:19-30.
-
(1999)
Methods Cell Biol
, vol.58
, pp. 19-30
-
-
Cubitt, A.B.1
Woollenweber, L.A.2
Heim, R.3
-
34
-
-
0034710922
-
Molecular spectroscopy and dynamics of intrinsically fluorescent proteins: Coral red (dsred) and yellow (citrine)
-
Heikal AA, Hess ST, Baird GS, Tsien RY, Webb WW. Molecular spectroscopy and dynamics of intrinsically fluorescent proteins: coral red (dsred) and yellow (citrine). Proc Natl Acad Sci USA. 2000;97:11996-12001.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 11996-12001
-
-
Heikal, A.A.1
Hess, S.T.2
Baird, G.S.3
Tsien, R.Y.4
Webb, W.W.5
|