Phosphoinositide recognition domains

Traffic

Volumn 4, Issue 4, 2003, Pages 201-213

  Lemmon, Mark A ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

Endosome; FYVE; Headgroup; Membrane; PH; Phox; Pleckstrin; PX; Targeting

Indexed keywords

BINDING PROTEIN; CYTOSKELETON PROTEIN; EPSIN; MEMBRANE LIPID; PHOSPHATIDYLINOSITIDE; PHOSPHATIDYLINOSITOL 3 KINASE; PLECKSTRIN; ZINC FINGER PROTEIN;

BILAYER MEMBRANE; BINDING AFFINITY; CYTOSKELETON; ENDOCYTOSIS; INTRACELLULAR MEMBRANE; INTRACELLULAR TRANSPORT; MEMBRANE TRANSPORT; NONHUMAN; NUCLEOTIDE SEQUENCE; OLIGOMERIZATION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN LIPID INTERACTION; PROTEIN LOCALIZATION; REVIEW; STRUCTURAL HOMOLOGY;

EID: 0038281249     PISSN: 13989219     EISSN: None     Source Type: Journal    
DOI: 10.1034/j.1600-0854.2004.00071.x     Document Type: Review

References (78)

1. Hurley JH, Meyer T. Subcellular targeting by membrane lipids. Curr Opin Cell Biol 2001;13:146-152.
2. Cho W. Membrane targeting by C1 and C2 domains. J Biol Chem 2001;276:32407-32410.
3. Murray D, Honig B. Electrostatic control of the membrane targeting of C2 domains. Mol Cell 2002;9:145-154.
4. Cullen PJ, Cozier GE, Banting G, Mellor H. Modular phosphoinositide-binding domains - their role in signalling and membrane trafficking. Curr Biol 2001;11:R882-R893.
5. Rameh LE, Tolias KF, Duckworth BC, Cantley LC. A new pathway for synthesis of phosphatidylinositol-4,5-bisphosphate. Nature 1997; 390: 192-196.
6. Dove SK, Cooke FT, Douglas MR, Sayers LG, Parker PJ, Michell RH. Osmotic stress activates phosphatidylinositol-3,5-bisphosphate synthesis. Nature 1997;390:187-192.
7. Stephens LR, Jackson TR, Hawkins PT. Agonist-stimulated synthesis of phosphatidylinositol 3,4,5-trisphosphate: a new intracellular signaling system? Biochim Biophys Acta 1993;1179:27-75.
8. 3: complex roles at the cell surface. Cell 2000;100:603-606.
9. Lemmon MA, Ferguson KM. Signal-dependent membrane targeting by pleckstrin homology (PH) domains. Biochem J 2000; 350:1-18.
10. Isakoff SJ, Cardozo T, Andreev J, Li Z, Ferguson KM, Abagyan R, Lemmon MA, Aronheim A, Skolnik EY. Identification and analysis of PH domain-containing targets of phosphatidylinositol 3-kinase using a novel in vivo assay in yeast. EMBO J 1998;17:5374-5387.
11. Dowler S, Currie RA, Downes CP, Alessi DR. DAPP1: a dual adaptor for phosphotyrosine and 3-phosphoinositides. Biochem J 1999; 342:7-12.
12. Kavran JM, Klein DE, Lee A, Falasca M, Isakoff SJ, Skolnik EY, Lemmon MA. Specificity and promiscuity in phosphoinositide binding by pleckstrin homology domains. J Biol Chem 1998;273: 30497-30508.
13. Baraldi E, Djinovic Carugo K, Hyvönen M, Lo Surdo P, Riley AM, Potter BV, O'Brien R, Ladbury JE, Saraste M. Structure of the PH domain from Bruton's tyrosine kinase in complex with inositol 1, 3,4, 5-tetrakisphosphate. Structure 1999; 7: 449-460.
14. Ferguson KM, Kavran JM, Sankaran VG, Fournier E, Isakoff SJ, Skolnik EY, Lemmon MA. Structural basis for discrimination of 3-phosphoinositides by pleckstrin homology domains. Mol Cell 2000;6:373-384.
15. Lietzke SE, Bose S, Cronin T, Klarlund J, Chawla A, Czech MP, Lambright DG. Structural basis of 3-phosphoinositide recognition by pleckstrin homology domains. Mol Cell 2000;6:385-394.
16. Thomas C, Deak M, Alessi D, van Aalten D. High-resolution structure of the pleckstrin homology domain of protein kinase b/akt bound to phosphatidylinositol(3,4,5)-trisphosphate. Curr Biol 2002;12:1256-1262.
17. Klarlund JK, Guilherme A, Holik JJ, Virbasius A, Czech MP. Signaling by 3,4,5-phosphoinositide through proteins containing pleckstrin and Sec7 homology domains. Science 1997;275:1927-1930.
18. Kojima T, Fukuda M, Watanabe Y, Hamazato F, Mikoshiba K. Characterization of the pleckstrin homology domain of Btk as an inositol polyphosphate and phosphoinositide binding domain. Biochem Biophys Res Commun 1997;236:333-339.
19. Banfic H, Tang X-W, Batty IH, Downes CP, Chen C-S, Rittenhouse SE. A novel integrin-activated pathway forms PKB/Akt-stimulatory phosphatidylinositol 3,4-bisphosphate via phosphatidylinositol 3-phosphate in platelets. J Biol Chem 1998;273:13-16.
20. Van der Kaay J, Beck M, Gray A, Downes CP. Distinct phosphatidylinositol 3-kinase lipid products accumulate upon oxidative and osmotic stress and lead to different cellular responses. J Biol Chem 1999; 274:35963-35968.
21. Thomas CC, Dowler S, Deak M, Alessi DR, van Aalten DM. Crystal structure of the phosphatidylinositol 3,4-bisphosphate-binding pleckstrin homology (PH) domain of tandem PH-domain-containing protein 1 (TAPP1): molecular basis of lipid specificity. Biochem J 2001; 358:287-294.
22. Dowler S, Currie RA, Campbell DG, Deak M, Kular G, Downes CP, Alessi DR. Identification of pleckstrin-homology-domain-containing proteins with novel phosphoinositide-binding specificities. Biochem J 2000; 351:19-31.
23. 2 and the multi-PDZ-domain-containing protein MUPP1 in vivo. Biochem J 2002; 361:525-536.
24. Kanai F, Liu H, Field SJ, Akbary H, Matsuo T, Brown GE, Cantley LC, Yaffe MB. The PX domains of p47phox and p40phox bind to lipid products of PI(3)K. Nat Cell Biol 2001;3:675-678.
25. Karathanassis D, Stahelin RV, Bravo J, Perisic O, Pacold CM, Cho W, Williams RL. Binding of the PX domain of p47 (phox) to phosphatidylinositol 3,4-bisphosphate and phosphatidic acid is masked by an intramolecular interaction. EMBO J 2002;19:5057-5068.
26. Gillooly DJ, Morrow IC, Lindsay M, Gould R, Bryant NJ, Gaullier JM, Parton RG, Stenmark H. Localization of phosphatidylinositol 3-phosphate in yeast and mammalian cells. EMBO J 2000;19:4577-4588.
27. Corvera S. Phosphatidylinositol 3-kinase and the control of endosome dynamics: new players defined by structural motifs. Traffic 2001; 2:859-866.
28. Odorizzi G, Babst M, Emr SD. Phosphoinositide signaling and the regulation of membrane trafficking in yeast. Trends Biochem Sci 2000;25:229-235.
29. Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, et al. The sequence of the human genome. Science 2001;291:1304-1351.
30. Bravo J, Karathanassis D, Pacold CM, Pacold ME, Ellson CD, Anderson KE, Butler PJ, Lavenir I, Perisic O, Hawkins PT, Stephens L, Williams RL. The crystal structure of the PX domain from p40 (phox) bound to phosphatidylinositol 3-phosphate. Mol Cell 2001;8:829-839.
31. Dumas JJ, Merithew E, Sudharshan E, Rajamani D, Hayes S, Lawe D, Corvera S, Lambright DG. Multivalent endosome targeting by homodimeric EEA1. Mol Cell 2001;8:947-958.
32. Misra S, Miller GJ, Hurley JH. Recognizing phosphatidylinositol 3-phosphate. Cell 2001;107:559-562.
33. Stenmark H, Aasland R, Driscoll PC. The phosphatidylinositol 3-phosphate-binding FYVE finger. FEBS Letts 2002;513:77-84.
34. Misra S, Hurley JH. Crystal structure of a phosphatidylinositol 3-phosphate-specific membrane-targeting motif, the FYVE domain of Vps27p. Cell 1999;97:657-666.
35. Stenmark H, Aasland R, Toh BH, D'Arrigo A. Endosomal localization of the autoantigen EEA1 is mediated by a zinc-binding FYVE finger. J Biol Chem 1996;271:24048-24054.
36. Sankaran VG, Klein DE, Sachdeva MM, Lemmon MA. High-affinity binding of FYVE domains to phosphatidylinositol-3-phosphate requires intact phospholipid, but not FYVE domain oligomerization. Biochemistry 2001;40:8581-8587.
37. Kutateladze T, Overduin M. Structural mechanism of endosome docking by the FYVE domain. Science 2001;291:1793-1796.
38. Stahelin RV, Long F, Diraviyam K, Bruzik KS, Murray D, Cho W. Phosphatidylinositol 3-phosphate induces the membrane penetration of the FYVE domains of Vps27p and Hrs. J Biol Chem 2002;277:26379-26388.
39. Hayes S, Chawla A, Corvera S. TGF beta receptor internalization into EEA1-enriched early endosomes: role in signaling to Smad2. J Cell Biol 2002;158:1239-1249.
40. Ridley SH, Ktistakis N, Davidson K, Anderson KE, Manifava M, Ellson CD, Lipp P, Boatman M, Coadwell J, Nazarian A, Erdjument-Bromage H, Tempst P, Cooper MA, Thuring JW, Lim ZY et al. FENS-1 and DFCP1 are FYVE domain-containing proteins with distinct functions in the endosomal and Golgi compartments. J Cell Sci 2001;114:3991-4000.
41. Ponting CP. Novel domains in NADPH oxidase subunits, sorting nexins, and PtdIns 3-kinases: binding partners of SH3 domains? Protein Sci 1996;5:2353-2357.
42. Cheever ML, Sato TK, de Beer T, Kutateladze TG, Emr SD, Overcuin M. Phox domain interaction with PtdIns(3) P targets the Vam7 t-SNARE to vacuole membranes. Nat Cell Biol 2001;3:613-618.
43. Ellson CD, Gobert-Gosse S, Anderson KE, Davidson K, Erdjument-Bromage H, Tempst P, Thuring JW, Cooper MA, Lim ZY, Holmes AB, Gaffney PR, Coadwell J, Chilvers ER, Hawkins PT, Stephens LR. PtdIns(3) P regulates the neutrophil oxidase complex by binding to the PX domain of p40phox. Nat Cell Biol 2001;3:679-682.
44. Song X, Xu W, Zhang A, Huang G, Liang X, Virbasius JV, Czech MP, Zhou GW. Phox homology domains specifically bind phosphatidylinositol phosphates. Biochemistry 2001;40:8940-8944.
45. Xu Y, Hortsman H, Seat L, Wong SH, Hong W. SNX3 regulates endosomal function through its PX-domain-mediated interaction with PtdIns(3)P. Nat Cell Biol 2001;3:658-666.
46. Yu JW, Lemmon MA. All phox homology (PX) domains from Saccharomyces cerevisiae specifically recognize phosphatidylinositol-3-phosphate. J Biol Chem 2001;276:44179-44184.
47. Kurten RC, Eddington AD, Chowdhury P, Smith RD, Davidson AD, Shank BB. Self-assembly and binding of a sorting nexin to sorting endosomes. J Cell Sci 2001;114:1743-1756.
48. Teasdale RD, Loci D, Houghton F, Karlsson L, Gleeson PA. A large family of endosome-localized proteins related to sorting nexin 1. Biochem J 2001;358:7-16.
49. Burda P, Padilla SM, Sarkar S, Emr SD. Retromer function in endosome-to-Golgi retrograde transport is regulated by the yeast Vps34 PtdIns 3-kinase. J Cell Sci 2002;115:3889-3900.
50. Sato TK, Overduin M, Emr SD. Location, location, location: membrane targeting directed by PX domains. Science 2001;294:1881-1885.
51. Seaman MNJ, McCaffery JM, Emr SD. A membrane coat complex essential for endosome-to-Golgi retrograde transport in yeast. J Cell Biol 1998;142:665-681.
52. Lemmon MA, Ferguson KM, O'Brien R, Sigler PB, Schlessinger J. Specific and high-affinity binding of inositol phosphates to an isolated pleckstrin homology domain. Proc Natl Acad Sci USA 1995;92:10472-10476.
53. Snyder JT, Rossman KL, Baumeister MA, Pruitt WM, Siderovski DP, Der CJ, Lemmon MA, Sondek J. Quantitative analysis of the effect of phosphoinositide interactions on the function of Dbl family proteins. J Biol Chem 2001;276:45868-45875.
54. 2 regulation of surface membrane traffic. Curr Opin Cell Biol 2001;13:493-499.
55. Hirose K, Kadowaki S, Tanabe M, Takeshima H, Iino M. Spatiotemporal dynamics of inositol 1,4,5-trisphosphate that underlies complex Ca2+ mobilization patterns. Science 1999;284:1527-1530.
56. 2 concentration monitored in living cells. Curr Biol 1998;8:343-346.
57. Cifuentes ME, Delaney T, Rebecchi MJ. D-myo-inositol 1,4,5-trisphosphate inhibits binding of phospholipase C-δ1 to bilayer membranes. J Biol Chem 1994;269:1945-1994.
58. Kanematsu T, Takeya H, Watanabe Y, Ozaki S, Yoshida M, Koga T, Iwanaga S, Hirata M. Putative inositol 1,4,5-trisphosphate binding proteins in rat brain cytosol. J Biol Chem 1992;267:6518-6525.
59. Jost M, Simpson F, Kavran JM, Lemmon MA, Schmid SL. Phosphatidylinositol-4,5-bisphosphate is required for endocytic coated vesicle formation. Curr Biol 1998;8:1399-1402.
60. Gaidarov I, Keen JH. Phosphoinositide-AP-2 interactions required for targeting to plasma membrane clathrin-coated pits. J Cell Biol 1999;146:755-764.
61. Collins BM, McCoy AJ, Kent HM, Evans PR, Owen DJ. Molecular architecture and functional model of the endocytic AP2 complex. Cell 2002;109:523-535.
62. Rohde G, Wenzel D, Haucke V. A phosphatidylinositol (4,5)-bisphosphate binding site within μ2-adaptin regulates clathrin-mediated endocytosis. J Cell Biol 2002;158:209-214.
63. 2 and clathrin by AP180 in the nucleation of clathrin lattices on membranes. Science 2001; 291:1051-1055.
64. Ford MG, Mills IG, Peter BJ, Vallis Y, Praefcke GJ, Evans PR, McMahon HT. Curvature of clathrin-coated pits driven by epsin. Nature 2002;419:361-366.
65. Kay BK, Yamabhai M, Wendland B, Emr SD. Identification of a novel domain shared by putative components of the endocytic and cytoskeletal machinery. Protein Sci 1999;8:435-458.
66. Itoh T, Koshiba S, Kigawa T, Kikuchi A, Yokoyama S, Takenawa T. Role of the ENTH domain in phosphatidylinositol-4,5-bisphosphate binding and endocytosis. Science 2001;291:1047-1051.
67. Hyman J, Chen H, Di Fiore PP, De Camilli P, Brünger AT. Epsin 1 undergoes nucleocytosolic shuttling and its eps15 interactorNH(2)-terminal homology (ENTH) domain, structurally similar to Armadillo and HEAT repeats, interacts with the transcription factor promyelocytic leukemia Zn(2)+ finger protein (PLZF). J Cell Biol 2000; 149:537-546.
68. Hurley JH, Wendland B. Endocytosis: driving membranes around the bend. Cell 2002;111:143-146.
69. Santagata S, Boggon TJ, Baird CL, Gomez CA, Zhao J, Shan WS, Myszka DG, Shapiro L. G-protein signaling through tubby proteins. Science 2001; 292:2041-2050.
70. Raucher D, Stauffer T, Chen W, Shen K, Guo S, York JD, Sheetz MP, Meyer T. Phosphatidylinositol 4,5-bisphosphate functions as a second messenger that regulates cytoskeleton-plasma membrane adhesion. Cell 2000; 100:221-228.
71. 2 influences cytoskeletal protein activity at the plasma membrane. J Cell Sci 2000;113:3685-3695.
72. Yin HL, Janmey PA. Phosphoinositide regulation of the actin cytoskeleton. Annu Rev Physiol 2003;65:91-929.
73. Rohatgi R, Ma L, Miki H, Lopez M, Kirchhausen T, Takenawa T, Kirschner MW. The interaction between N-WASP and the Arp2/3 complex links Cdc42-dependent signals to actin assembly. Cell 1999;97:221-231.
74. Niggli V. Structural properties of lipid-binding sites in cytoskeletal proteins. Trends Biochem Sci 2001;26:604-611.
75. 2 rafts. EMBO J 2001;20:4332-4336.
76. 2 and proteins: interactions, organization, and information flow. Annu Rev Biophys Biomol Struct 2002;31:151-175.
77. Hamada K, Shimizu T, Matsui T, Tsukita S, Hakoshima T. Structural basis of the membrane-targeting and unmasking mechanisms of the radixin FERM domain. EMBO J 2000;19:4449-4462.
78. Levine TP, Munro S. Targeting of Golgi-specific pleckstrin homology domains involves both PtdIns 4-kinase-dependent, and independent, components. Curr Biol 2002;12:695-704.