The Caenorhabditis elegans mRNA 5′-capping enzyme: In vitro and in vivo characterization

Journal of Biological Chemistry

Volumn 278, Issue 16, 2003, Pages 14174-14184

  Takagi, Toshimitsu ^a,b   Walker, Amy K ^a   Sawa, Chika ^a   Diehn, Felix ^a,c   Takase, Yasutaka ^a,d   Blackwell, T Keith ^a   Buratowski, Stephen ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

^b MERCK RESEARCH LABORATORIES   (United States)

^c MAYO CLINIC   (United States)

^d EISAI CO LTD   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CHEMICAL ACTIVATION; DNA SEQUENCES; MUTAGENESIS; NUCLEIC ACIDS; PROTONS;

CAPPING ENZYMES;

ENZYMES;

ENZYME; GUANYLYLTRANSFERASE; MESSENGER RNA; MRNA CAPPING ENZYME; PHOSPHATASE; RNA TRIPHOSPHATASE; TRANSFERASE; UNCLASSIFIED DRUG; COMPLEMENTARY DNA; MESSENGER RIBONUCLEIC ACID GUANYLYLTRANSFERASE; NUCLEOTIDYLTRANSFERASE; RECOMBINANT PROTEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; CAENORHABDITIS ELEGANS; CARBOXY TERMINAL SEQUENCE; EUKARYOTE; GENE EXPRESSION; MOLECULAR CLONING; MUTAGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN STRUCTURE; RNA CAPPING; SACCHAROMYCES CEREVISIAE; AMINO ACID SEQUENCE; ANIMAL; BINDING SITE; CELL NUCLEUS; CHEMISTRY; DATA BASE; DOSE RESPONSE; ENZYMOLOGY; EXPRESSED SEQUENCE TAG; FLUORESCENCE MICROSCOPY; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION; GENETICS; HUMAN; IN VITRO STUDY; METABOLISM; MOLECULAR GENETICS; MOUSE; OPEN READING FRAME; PH; PHENOTYPE; PHYSIOLOGY; PROTEIN TERTIARY STRUCTURE; RNA INTERFERENCE; SEQUENCE HOMOLOGY; SITE DIRECTED MUTAGENESIS;

CAENORHABDITIS; CAENORHABDITIS ELEGANS; EUKARYOTA; METAZOA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CAENORHABDITIS ELEGANS; CELL NUCLEUS; CLONING, MOLECULAR; DATABASES; DNA, COMPLEMENTARY; DOSE-RESPONSE RELATIONSHIP, DRUG; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION TEST; HUMANS; HYDROGEN-ION CONCENTRATION; MICE; MICROSCOPY, FLUORESCENCE; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; NUCLEOTIDYLTRANSFERASES; OPEN READING FRAMES; PHENOTYPE; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; RNA INTERFERENCE; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0038190936     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M212101200     Document Type: Article

References (84)

1. Furuichi, Y., and Shatkin, A. J. (2000) Adv. Virus Res. 55, 135-184
2. Shuman, S. (2000) Prog. Nucleic Acid Res. Mol. Biol. 66, 1-40
3. Takagi, T., Moore, C. R., Diehn, F., and Buratowski, S. (1997) Cell 89, 867-873
4. Denu, J. M., Stuckey, J. A., Saper, M. A., and Dixon, J. E. (1996) Cell 87, 361-364
5. Fauman, E. B., and Saper, M. A. (1996) Trends Biochem. Sci. 21, 413-417
6. Barford, D., Das, A. K., and Egloff, M.-P. (1998) Annu. Rev. Biophys. Biomol. Struct. 27, 133-164
7. Denu, J. M., and Dixon, J. E. (1998) Curr. Opin. Chem. Biol. 2, 633-641
8. Takagi, T., Taylor, G. S., Kusakabe, T., Charbonneau, H., and Buratowski, S. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 9808-9812
9. Fresco, L. D., and Buratowski, S. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 6624-6628
10. Cho, E.-J., Rodriguez, C. R., Takagi, T., and Buratowski, S. (1998) Genes Dev. 12, 3482-3487
11. Takase, Y., Takagi, T., Komarnitsky, P. B., and Buratowski, S. (2000) Mol. Cell. Biol. 24, 9307-9316
12. Gietz, D., St. Jean, A., Woods, R. A., and Schiestl, R. (1992) Nucleic Acids Res. 20, 1425
13. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidmankkkk, J. G., Smit, J. A., and Struhl, K. (eds) (1991) Current Protocols in Molecular Biology, John Wiley & Sons, Inc., New York
14. Guthrie, C., and Fink, G. (1991) Methods Enzymol. 194, 1-933
15. Kunkel, T. A., Roberts, J. D., and Zakour, R. A. (1987) Methods Enzymol. 154, 367-382
16. Vieira, J., and Messing, J. (1987) Methods Enzymol. 153, 3-11
17. Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K., and Pease, L. R. (1989) Gene (Amst.) 77, 51-59
18. Rodriguez, C. R., Takagi, T., Cho, E.-J., and Buratowski, S. (1999) Nucleic Acids Res. 27, 2181-2188
19. Studier, F. W., Rosenberg, A. H., Dunn, J. J., and Dubendorff, J. W. (1990) Methods Enzymol. 185, 60-89
20. Matsuo, H., Moriguchi, T., Takagi, T., Kusakabe, T., Buratowski, S., Sekine, M., Kyogoku, Y., and Wagner, G. (2000) J. Am. Chem. Soc. 122, 2417-2421
21. Kusakabe, T., and Richardson, C. C. (1997) J. Biol. Chem. 272, 5943-5951
22. Ichetovkin, I. E., Abramochkin, G., and Shrader, T. E. (1997) J. Biol. Chem. 272, 33009-33014
23. Shim, E. Y., Walker, A. K., Shi, Y., and Blackwell, T. K. (2002) Genes Dev. 16, 2135-2146
24. Shim, E. Y., Walker, A. K., and Blackwell, T, K. (2002) J. Biol. Chem. 277, 30413-30416
25. Bellier, S., Dubois, M. F., Nishida, E., and Almouzni, G., and Bensaude, O. (1997) EMBO J. 16, 6250-6252
26. Schroeder, S. C., Schwer, B., Shuman, S., and Bentley, D. (2000) Genes Dev. 14, 2435-2440
27. Walker, A. K., Rothman, J. H., Shi, Y., and Blackwell, T. K. (2001) EMBO J. 20, 5269-5279
28. Wang, S. P., Deng, L., Ho, C. K., and Shuman, S. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 9573-9578
29. Yue, Z., Maldonado, E., Pillutla, R., Cho, H., Reinberg, D., and Shatkin, A. J. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 12898-12903
30. McCracken, S., Fong, N., Rosonina, E., Yankulov, K., Brothers, G., Siderovski, D., Hessel, A., Foster, S., Amgen EST Project, Shuman, S., and Bentley, D. L. (1997) Genes Dev. 11, 3306-3318
31. Tsukamoto, T., Shibagaki, Y., Murakoshi, T., Suzuki, M., Nakamura, A., Gotoh, H., and Mizumoto, K. (1998) Biochem. Biophys. Res. Commun. 243, 101-108
32. Yamada-Okabe, T., Doi, R., Shimmi, O., Arisawa, M., and Yamada-Okabe, H. (1998) Nucleic Acids Res. 26, 1700-1706
33. Yokoska, J., Tsukamoto, T., Miura, K., Shiokawa, K., and Mizumoto, K. (2000) Biochem. Biophys. Res. Commun. 268, 617-624
34. Hakansson, K., Doherty, A. J., Shuman, S., and Wigley, D. B. (1997) Cell 89, 545-554
35. Hakansson, K., and Wigley, D. B. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 1505-1510
36. Shuman, S., and Schwer, B. (1995) Mol. Microbiol. 17, 405-410
37. Itoh, N., Yamada, H., Kaziro, Y., and Mizumoto, K. (1987) J. Biol. Chem. 262, 1989-1995
38. Shibagaki, Y., Itoh, N., Yamada, H., Nagata, S., and Mizumoto, K. (1992) J. Biol. Chem. 267, 9521-9528
39. Tsukamoto, T., Shibagaki, Y., Imajoh-Ohmi, S., Murakoshi, T., Suzuki, M., Nakamura, A., Gotoh, H., and Mizumoto, K. (1997) Biochem. Biophys. Res. Commun. 239, 116-122
40. Lima, C. D., Wang, L. K., and Shuman, S. (1999) Cell 99, 533-543
41. Ho, C. K., Sriskanda, V., McCracken, S., Bentley, D., Schwer, B., and Shuman, S. (1998) J. Biol. Chem. 273, 9577-9585
42. Field, J., Nikawa, J.-I., Broek, D., MacDonald, B., Rodgers, L., Wilson, I. A., Lerner, R. A., and Wigler, M. (1988) Mol. Cell. Biol. 8, 2159-2165
43. Cho, E.-J., Takagi, T., Moore, C. R., and Buratowski, S. (1997) Genes Dev. 11, 3319-3326
44. Ho, C. K., and Shuman, S. (1999) Mol. Cell 3, 405-411
45. Pei, Y., Hausmann, S., Ho, C. K., Schwer, B., and Shuman, S. (2001) J. Biol. Chem. 276, 28075-28082
46. Takagi, T., Cho, E.-J., Janoo, R. T. K., Polodny, V., Takase, Y., Keogh, M.-C., Woo, S.-A., Fresco-Cohen, L. D., Hoffman, C. S., and Buratowski, S. (2002) Eukaryot. Cell 1, 448-457
47. Zhang, Z.-Y., Wang, Y., Wu, L., Fauman, E. B., Stuckey, J. A., Schubert, H. L., Saper, M. A., and Dixon, J. E. (1994) Biochemistry 33, 15266-15270
48. Zhang, Z.-Y., Wang, Y., and Dixon, J. E. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 1624-1627
49. Hengge, A. C., Sowa, G. A., Wu, L., and Zhang, Z.-Y. (1995) Biochemistry 34, 13982-13987
50. Denu, J. M., Zhou, G., Guo, Y., and Dixon, J. E. (1995) Biochemistry 34, 3396-3403
51. Wen, Y., Yue, Z., and Shatkin, A. J. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 12226-12231
52. Changela, A., Ho, C. K., Martins, A., Shuman, S., and Mondragon, A. (2001) EMBO J. 20, 2575-2586
53. Martins, A., and Shuman, S. (2000) J. Biol. Chem. 275, 35070-35076
54. Denu, J. M., Lohse, D. L., Vijayalakshmi, J., Saper, M. A., and Dixon, J. E. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 2493-2498
55. Deshpande, T., Takagi, T., Hao, L., Buratowski, S., and Charbonneau, H. (1999) J. Biol. Chem. 274, 16590-16594
56. Fire, A., Xu, S., Montogomery, M. K., Kostas, S. A., Driver, S. E., and Mello, C. C. (1998) Nature 391, 806-811
57. Powell-Coffman, J. A., Knight, J., and Wood, W. B. (1996) Dev. Biol. 178, 472-483
58. Hirose, Y., and Manley, J. L. (2000) Genes Dev. 14, 1415-1429
59. Fong, N., and Bentley, D. L. (2001) Genes Dev. 15, 1783-1795
60. Komarnitsky, P., Cho, E.-J., and Buratowski, S. (2000) Genes Dev. 14, 2452-2460
61. Cho, E.-J., Kobor, M. S., Kim, M., Greenblatt, J., and Buratowski, S. (2001) Genes Dev. 15, 3319-3329
62. Price, D. H. (2000) Mol. Cell. Biol. 20, 2629-2634
63. Seydoux, G., and Dunn, M. A. (1997) Development 124, 2191-2201
64. Ho, C. K., Schwer, B., and Shuman, S. (1998) Mol. Cell. Biol. 18, 5189-5198
65. Gross, C. H., and Shuman, S. (1998) J. Virol. 72, 7057-7063
66. Maehama, T., Taylor, G. S., and Dixon, J. E. (2001) Annu. Rev. Biochem. 70, 247-279
67. Mukhopadhyay, R., and Rosen, B. P. (2001) J. Biol. Chem. 276, 34738-34742
68. Vankatesan, S., and Moss, B. (1980) J. Biol. Chem. 255, 2835-2842
69. Wang, D., Furuichi, Y., and Shatkin, A. J. (1982) Mol. Cell. Biol. 2, 993-1001
70. Wang, D., and Shatkin, A. J. (1984) Nucleic Acids Res. 23, 2303-2315
71. Mizumoto, K., Kaziro, Y., and Lipman, F. (1982) Proc. Natl. Acad. Sci. U. S. A. 79, 1693-1697
72. Itoh, N., Mizumoto, K., and Kaziro, Y. (1984) J. Biol. Chem. 259, 13930-13936
73. Cramer, P., Bushnell, D. A., and Kornberg, R. D. (2001) Science 292, 1863-1876
74. Jove, R., and Manley, J. L. (1984) J. Biol. Chem. 259, 8513-8521
75. Rasmussen, E. B., and Lis, J. T. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 7923-7927
76. Hausmann, S., Ho, C. K., Schwer, B., and Shuman, S. (2001) J. Biol. Chem. 276, 36116-36124
77. Chiu, Y.-L., Coronel, E., Ho, C. K., Shuman, S., and Rana, T. M. (2001) J. Biol. Chem. 276, 12959-12966
78. Altschul, S. F., Thoma, L. M., Alejandro, A. S., Jinghui, Z., Zheng, Z., Webb, M., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
79. Yuan, Y., Li, D.-M., and Sun, H. (1998) J. Biol. Chem. 273, 20347-20353
80. Sheng, Z., and Charbonneau, H. (1993) J. Biol. Chem. 268, 4728-4733
81. Sikorski, R. S., and Hieter, P. (1989) Genetics 122, 19-27
82. Victor, M., Bei, Y., Gay, F., Calvo, D., Mello, C., and Shi, Y. (2002) EMBO Rep. 3, 50-55
83. Bregman, D. B. X., Du, L., van der Zee, S., and Warren, S. L. (1995) J. Cell Biol. 129, 287-298
84. Patturajan, M., Schulte, R. J., Sefton, B. M., Berezney, R., Vincent M., Bensaude, O., Warren, S. L., and Corden, J. L. (1998) J. Biol. Chem. 273, 4689-4694