Specific antibody - DNA interaction: A novel strategy for fight dna recognition

Biochemistry

Volumn 42, Issue 20, 2003, Pages 6218-6227

  Di Pietro, Santiago M ^a,c   Centeno, Juan M ^a   Cerutti, M Laura ^a   Lodeiro, M Fernanda ^a   Ferreiro, Diego U ^a   Alonso, Leonardo G ^a   Schwarz, Frederick P ^b   Goldbaum, Fernando A ^a   De Prat Gay, Gonzalo ^a  

^a UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^b NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENES; INTERFACES (MATERIALS); MOLECULES; SPECIFIC HEAT; STRUCTURAL ANALYSIS;

MONOCLONAL ANTIBODIES;

ANTIBODIES;

ANTIGEN; DNA; DNA ANTIBODY; DNA BASE; DNA FRAGMENT; DOUBLE STRANDED DNA; MONOCLONAL ANTIBODY; PROTEIN; WATER;

ANTIGEN RECOGNITION; ARTICLE; BINDING AFFINITY; BINDING KINETICS; BINDING SITE; CONFORMATIONAL TRANSITION; DIFFUSION; DNA DENATURATION; DNA SEQUENCE; ELECTRICITY; ENERGY; HEAT; MOLECULAR STABILITY; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; SOLUTE; SPECTROSCOPY; STRUCTURE ANALYSIS; THERMODYNAMICS; TRANSCRIPTION REGULATION;

ANIMALS; ANTIBODIES, ANTINUCLEAR; ANTIBODIES, MONOCLONAL; ANTIGEN-ANTIBODY REACTIONS; BASE SEQUENCE; BINDING SITES; DNA; DNA, VIRAL; DNA-BINDING PROTEINS; KINETICS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; ONCOGENE PROTEINS, VIRAL; PAPILLOMAVIRIDAE; THERMODYNAMICS;

EID: 0038075395     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi026866u     Document Type: Article

References (43)

1. Luscombe, N. M., Laskowski, R. A., and Thornton, J. M. (2001) Nucleic Acids Res. 29, 2860-2874.
2. Garvie, C. W., and Wolberger, C. (2001) Mol. Cell 8, 937-946.
3. Blackburn, G. M., and Gait, M. J. (1996) in Nucleic acids in chemistry and biology, Oxford University Press, New York.
4. Braden, B. C., and Poljak, R. J. (1995) FASEB J. 9, 9-16.
5. Davies, D. R., and Cohen, G. H. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 7-12.
6. Stollar, B. D. (1986) CRC Crit. Rev. Biochem. 20, 1-36.
7. Stollar, B. D. (1994) FASEB J. 8, 337-342.
8. Stollar, B. D., Zon, G., and Pastor, R. W. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 4469-4473.
9. Stevens, S. Y., and Glick, G. D. (1999) Biochemistry 38, 560- 568.
10. Ackroyd, P. C., Cleary, J., and Glick, G. D. (2001) Biochemistry 40, 2911-2922.
11. Cerutti, M. L., Centeno, J. M., Goldbaum, F. A., and de Prat-Gay, G. (2001) J. Biol. Chem. 276, 12769-12773.
12. Rozenberg, H., Rabinovich, D., Frolow, F., Hegde, R. S., and Shakked, Z. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 15194- 15199.
13. Hegde, R. S., Grossman, S. R., Laimins, L. A., and Sigler, P. B. (1992) Nature 359, 505-512.
14. Johnson, W. C. J. (1996) Determination of the conformation of nucleic acids by electronic CD, in Circular Dichroism and the conformational analysis of biomolecules (Fasman, G. D., Ed.) Vol. 12, pp 433-468, Plenum Press, New York.
15. Xu, D., Evans, K. O., and Nordlund, T. M. (1994) Biochemistry 33, 9592-9599.
16. Record, M. T., Jr., Lohman, M. L., and De Haseth, P. (1976) J. Mol. Biol. 107, 145-158.
17. Ladbury, J. E., and Chowdhry, B. Z. (1996) Chem. Biol. 3, 791-801.
18. Plum, G. E., and Breslauer, K. J. (1995) Curr. Opin. Struct. Biol. 5, 682-690.
19. Ha, J.-H., Spolar, R. S., and Record, M. T., Jr. (1989) J. Mol. Biol. 209, 801-816.
20. Spolar, R. S., and Record, M. T., Jr. (1994) Science 263, 777-784.
21. Sturtevant, J. M. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 2236-2240.
22. Gomez, J., and Freire, E. (1995) J. Mol. Biol. 252, 337-350.
23. Hegde, R. S., and Androphy, E. J. (1998) J. Mol. Biol. 284, 1479-1489.
24. Record, M. T., Jr., Ha, J. H., and Fisher, M. A. (1991) Methods Enzymol. 208, 291-343.
25. O'Brien, R., DeDecker, B., Fleming, K. G., Sigler, P. B., and Ladbury, J. E. (1998) J. Mol. Biol. 279, 117-125.
26. Record, M. T., Jr., Zhang, W., and Anderson, C. F. (1998) Adv. Protein Chem. 51, 281-353.
27. Krishnan, M. R., Jou, N., and Marion, T. N. (1996) J. Immunol. 157, 2430-2439.
28. Radic, M. Z., and Weigert, M. (1994) Annu. Rev. Immunol. 12, 487-520.
29. Swanson, P. C., Ackroyd, C., and Glick, G. D. (1996) Biochemistry 35, 1624-1633.
30. Janin, J. (1997) Structure 5, 473-479.
31. Chalikian, T. V., Volker, J., Plum, G. E., and Breslauer, K. J. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 7853-7858.
32. Myers, J. K., Pace, C. N., and Scholtz, J. M. (1995) Protein Sci. 4, 2138-2148.
33. Foote, J., and Eisen, H. N. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 1254-1256.
34. Travers, A. (1993) DNA-protein interactions, Chapman & Hall, London.
35. Mok, Y. K., de Prat Gay, G., Butler, P. J., and Bycroft, M. (1996) Protein Sci. 5, 310-319.
36. Cantor, C. R., Warshaw, M. M., and Shapiro, H. (1970) Biopolymers 9, 1059-1077.
37. de Prat Gay, G., and Fersht, A. R. (1994) Biochemistry 33, 1957-1963.
38. Schwarz, F. P., Tello, D., Goldbaum, F. A., Mariuzza, R. A., and Poljak, R. J. (1995) Eur. J. Biochem. 228, 388-394.
39. Gray, D. M. (1996) Circular Dichroism of protein-DNA interactions, in Circular Dichroism and the conformational analysis of biomolecules (Fasman, G. D., Ed.) Vol. 12, Chapter 13, pp 469-500, Plenum Press, New York.
40. Ferreiro, D. U., et al. (2000) Biochemistry 39, 14692-14701.
41. de Prat Gay, G., Ruiz-Sanz, J., and Fersht, A. R. (1994) Biochemistry 33, 7964-7970.
42. Herron, J. N., et al (1991) Proteins: Struct., Funct., Genet. 11, 159-175.
43. Tanner, J. J., Komissarov, A. A., and Deutscher, S. L. (2001) J. Mol. Biol. 314, 807-822.