Gene organization for nitric oxide reduction in alcaligenes faecalis S-6

Bioscience, Biotechnology and Biochemistry

Volumn 64, Issue 4, 2000, Pages 852-857

  Kukimoto, Mutsuko ^a   Nishiyama, Makoto ^a   Tanokura, Masaru ^a   Horinouchi, Sueharu ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Alcaligenes faecalis; Cytochrome bc complex; Denitrification; Nitric oxide reductase

Indexed keywords

ALCALIGENES FAECALIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

BACTERIAL DNA; CYTOCHROME B; CYTOCHROME C; NITRIC OXIDE; NITRIC OXIDE REDUCTASE; NITRIC-OXIDE REDUCTASE; OXIDOREDUCTASE;

ALCALIGENES; AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; ENZYMOLOGY; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OXIDATION REDUCTION REACTION;

ALCALIGENES; AMINO ACID SEQUENCE; BASE SEQUENCE; CYTOCHROME B GROUP; CYTOCHROME C GROUP; DNA, BACTERIAL; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; NITRIC OXIDE; OXIDATION-REDUCTION; OXIDOREDUCTASES;

EID: 0034168650     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.64.852     Document Type: Article

References (31)

1. Kakutani, T., Beppu, T., and Arima, K., Regulation of nitrite reductase in the denitrifying bacterium Al-caligenes faecalis. Agric. Biol. Chem., 45, 23-28 (1981).
2. Kakutani, T., Watanabe, H., Arima, K., and Beppu, T., Purification and properties of a copper-containing nitrite reductase from a denitrifying bacterium, Al-caligenes faecalis. J. Biochem., 89, 453-461 (1981).
3. Kakutani, T., Watanabe, H., Arima, K., and Beppu, T., A blue protein as an inactivating factor for nitrite reductase from Alcaligenes faecalis. J. Biochem., 89, 463-472 (1981).
4. Nishiyama, M., Suzuki, J., Kukimoto, M., Ohnuki, T., Horinouchi, S., and Beppu, T., Cloning and characterization of a nitrite reductase gene from Alcaligenes faecalis and its expression in Escherichia coli. J. Gen. Microbiol., 139, 725-733 (1993).
5. Yamamoto, K., Uozumi, T., and Beppu, T., The blue copper protein gene of Alcaligenes faecalis S-6 directs secretion of blue copper protein from Escherichia coli cells. J. Bacteriol., 169, 5648-5652 (1987).
6. Kukimoto, M., Nishiyama, M., Murphy, M. E. P., Turley, S., Adman, E. T., Horinouchi, S., and Beppu, T., X-ray structure and site-directed mutagenesis of a nitrite reductase from Alcaligenes faecalis S-6: roles of two copper atoms in nitrite reduction. Biochemistry, 33, 5246-5252 (1994).
7. Kukimoto, M., Nishiyama, M., Ohnuki, T., Turley, S., Adman, E. T., Horinouchi, S., and Beppu, T., Identification of interaction site of pseudoazurin with its redox partner, copper-containing nitrite reductase from Alcaligenes faecalis S-6. Protein Eng., 8, 153-158 (1995).
8. Kukimoto, M., Nishiyama, M., Tanokura, M., Adman, E. T., and Horinouchi, S., Studies on protein-protein interaction between copper-containing nitrite reductase and pseudoazurin from Alcaligenes faecalis S-6. J. Biol. Chem., 271, 13680-13683 (1996).
9. Kukimoto, M., Nishiyama, M., Tanokura, M., Murphy, M. E. P., Adman, E. T., and Horinouchi, S., Site-directed mutagenesis of azurin from Pseudomonas aeruginosa enhances the formation of an electron-transfer complex with a copper-containing nitrite reductase from Alcaligenes faecalis S-6. FEBS Lett., 394, 87-90 (1996).
10. Ye, R. W., Aver ill, B. A., and Tiedje, J. M., Denitrification: production and consumption of nitric oxide. Appl. Environ. Microbiol., 60, 1053-1058 (1994).
11. Zumft, W. G., The biological role of nitric oxide in bacteria. Arch. Microbiol., 160, 253-264 (1993).
12. Ye, R. W., Arunakumari, A., Averill, B. A., and Tiedje, J. M., Mutants of Pseudomonas fluorescens deficient in dissimilatory nitrite reduction are also altered in nitric oxide reduction. J. Bacteriol., 174, 2560-2564 (1992).
13. Ye, R. W., Averill, B. A., and Tiedje, J. M., Characterization of Tn5 mutants deficient in dissimilatory nitrite reduction in Pseudomonas sp. strain G-179, which contains a copper nitrite reductase. J. Bacteriol., 174, 6653-6658 (1992).
14. Heiss, B., Frunzke, K., and Zumft, W. G., Formation of the N-N bond from nitric oxide by a membrane-bound cytochrome be complex of nitrate-respiring (denitrifying) Pseudomonas stutzeri. J. Bacteriol., Vol III, 3288-3297 (1989).
15. Carr, G. J. and Ferguson, S., The nitric oxide reductase of Paracoccus denitrificans. Biochem. J., 269, 423-429 (1990).
16. Dermastia, M., Turk, T., and Hollocher, T. C., Nitric oxide reductase: purification from Paracoccus denitrificans with use of a single column and some characteristics. J. Biol. Chem., 266, 10899-10905 (1992).
17. Jones, A. M. and Hollocher, T. C., Nitric oxide reductase of Achromobacter cycloclastes. Biochim. Biophys. Acta, 1144, 359-366 (1993).
18. Nakahara, K., Tanimoto, T., Hatano, K., Usuda, K., and Shoun, H., Cytochrome P-450 55A1 (P-450dNIR) acts as nitric oxide reductase employing NADH as the direct electron donor. J. Biol. Chem., 268, 8350-8355 (1993).
19. Thomas, P. E., Ryan, D., and Levin, W., An improved staining procedure for the detection of the peroxidase activity of cytochrome P-450 on sodium dodecyl sulfate polyacrylamide gels. Anal. Biochem., 75, 168-176 (1976).
20. Bedzyk, L., Wang, T., and Ye, R. W., The periplas-mic nitrate reductase in Pseudomonas sp. strain G-179 catalyzes the first step of denitrificaion. J. Bacteriol., 181, 2802-2806 (1999).
21. De Boer, A. P. N., Van der Oost, J., Reijnders, W. N. M., Westerhoff, H. V., Stouthamer, A. H., and Spanning, R. J. M., Mutational analysis of the nor gene cluster which encodes nitric-oxide reductase from Paracoccus denitrificans. Eur. J. Biochem., 242, 592-600 (1996).
22. Bartnikas, T. B., Tosques, I. E., Laratta, W. P., Shi, J., and Shapleigh, J. P., Characterization of the nitric oxide reductase-encoding region in Rhodobac-ter sphaeroides 2.4.3. J. Bacteriol., 179, 3534-3540 (1997).
23. Arai, H., Igarashi, Y., and Kodama, T., The structural genes for nitric oxide reductase from Pseudomonas aeruginosa. Biochim. Biophys. Acta, 1261, 279-284 (1995).
24. Zumft, W. G., Braun, C., and Cuypers, H., Nitric oxide reductase from Pseudomonas stutzeri: primary structure and gene organization of a novel bacterial cytochrome be complex. Eur. J. Biochem., 219, 481-490 (1994).
25. Arai, H., Igarashi, Y., and Kodama, T., Structure and ANR-dependent transcription of the nir genes for denitrification from Pseudomonas aeruginosa. Biosci. Biotechnol. Biochem., 58, 1286-1291 (1994).
26. Spiro, S. and Guest, J. R., FNR and its role in oxygen-regulated gene expression in Escherichia coli. FEMS Microbiol. Rev., 75, 399-428 (1990).
27. Vollack, K. U., Xie, J., Hartig, E., Romling, U., and Zumft, W. G., Localization of denitrification genes on the chromosomal map of Pseudomonas aeruginosa. Microbiology, 144, 441-448 (1998).
28. Spanning, R. J. M., De Boer, A. P. N., Reijnders, W. N. M., Spiro, S., Westerhoff, H. V., Stouthamer, A. H., and Van der Oost, J., Nitrite and nitric oxide reduction in Paracoccus denitrificans is under the controle of NNR, a regulatory protein that belongs to the FNR family of transcriptional activators. FEBS Lett., 360, 151-154 (1995).
29. Jlingst, A. and Zumft, W. G., Interdependence of respiratory NO reduction and nitrite reduction revealed by mutagenesis of nirQ, a novel gene in the denitrification gene cluster of Pseudomonas stutzeri. FEBS Lett., 314, 308-314 (1992).
30. Arai, H., Kodama, T., and Igarashi, Y., The role of the nirQOP genes in energy conservation during anaerobic growth of Pseudomonas aeruginosa. Biosci. Biotechnol. Biochem., 62, 1995-1999 (1998).
31. Vollack, K. U., Hartig, E., Korner, H., and Zumft, W. G., Multiple transcription factors of the FNR family in denitrifying Pseudomonas stutzeri: characterization of four fnr-like genes, regulatory responses and cognate metabolic processes. Mol. Microbiol., 31, 1681-1694 (1999).