Characterization of the nitric oxide reductase-encoding region in Rhodobacter sphaeroides 2.4.3

Journal of Bacteriology

Volumn 179, Issue 11, 1997, Pages 3534-3540

  Bartnikas, Thomas B ^a,b   Tosques, Ivan E ^a   Laratta, William P ^a   Shi, Jiarong ^a   Shapleigh, James P ^a  

^a Department of Obstetrics Gynecology   (United States)

^b WASHINGTON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; NITRIC OXIDE REDUCTASE; NITRITE REDUCTASE;

AMINO ACID SEQUENCE; ARTICLE; DENITRIFICATION; DNA FLANKING REGION; ENZYME ANALYSIS; GENE CLUSTER; GENE EXPRESSION; GENE ISOLATION; GENETIC ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PRIORITY JOURNAL; PROMOTER REGION; RHODOBACTER SPHAEROIDES; SEQUENCE ANALYSIS; STRUCTURAL GENE;

RHODOBACTER SPHAEROIDES; RHODOPSEUDOMONAS;

EID: 0030984912     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.179.11.3534-3540.1997     Document Type: Article

References (44)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Arai, H., Y. Igarashi, and T. Kodama. 1995. Expression of the nir and nor genes for denitrification of Pseudomonas aeruginosa requires a novel CRP-FNR-related transcriptional regulator, DNR, in addition to ANR. FEBS Lett. 371:73-76.
3. Arai, H., Y. Igarashi, and T. Kodama. 1995. The structural genes for nitric oxide reductase from Pseudomonas aeruginosa. Biochim. Biophys. Acta 1261: 279-284.
4. Arai, H., I. Yasuo, and T. Kodama. 1994. Structure and ANR-dependent expression of the nir genes for denitrification from Pseudomonas aeruginosa. Biosci. Biotechnol. Biochem. 58:1286-1291.
5. Bartnikas, T. B., J. Shi, W. P. Laratta, and J. P. Shapleigh. Characterization and localization of hemN in Rhodobacter sphaeroides: close proximity of hemN to other genes essential for anaerobic electron transport. Submitted for publication.
6. Birnboim, H. C., and J. Doly. 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7:1513-1523.
7. Chung, C. T., S. L. Niemela, and R. H. Miller. 1989. One-step transformation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc. Natl. Acad. Sci. USA 86:2172-2175.
8. De Boer, A. P. N., W. N. M. Reijnders, J. Van der Oost, A. H. Stouthamer, and R. J. M. Van Spanning. 1996. Mutational analysis of the nor gene cluster which encodes nitric oxide reductase from Paracoccus denitrificans. Eur. J. Biochem., 242:592-600.
9. Dermastia, M., T. Turk, and T. C. Hollocher. 1991. Nitric oxide reductase. J. Biol. Chem. 266:10899-10905.
10. Gennis, R. B., B. Ludwig, and R. Casey. 1982. Purification and characterization of the cytochrome c oxidase from Rhodopseudomonas sphaeroides. Eur. J. Biochem. 125:189-195.
11. Goretski, J., O. C. Zafiriou, and T. C. Hollocher. 1990. Steady-state nitric oxide concentrations during denitrification. J. Biol. Chem. 265:11535-11538.
12. Hill, J., V. C. Goswitz, M. Calhoun, J. A. Garcia-Horsman, L. Lemieux, J. O. Alben, and R. B. Gennis. 1992. Demonstration by FTIR that the bo-type quinol oxidase of Escherichia coli contains a heme-copper binuclear center similar to that in cytochrome c oxidase and that proper assembly of the binuclear center requires the cyoE gene product. Biochemistry 31:11435-11440.
13. Iwata, S., C. Ostermeier, B. Ludwig, and H. Michel. 1995. Structure at 2.8Å resolution of cytochrome c oxidase from Paracoccus denitrificans. Nature 376:660-669.
14. Jones, A. M., and T. C. Hollocher. 1993. Nitric oxide reductase of Achromobacter cyclolastes. Biochim. Biophys. Acta 1144:359-366.
15. Jungst, A., and W. G. Zumft. 1992. Interdependence of respiratory NO reduction and nitrite reduction revealed by mutagenesis of nirQ, a novel gene in the denitrification gene cluster of Pseudomonas stutzen. FEBS Lett. 314:308-314.
16. Kastrau, D. H. W., B. Heiss, P. M. H. Kroneck, and W. G. Zumft. 1994. Nitric oxide reductase from Pseudomonas stutzeri, a novel cytochrome bc complex. Eur. J. Biochem. 222:293-303.
17. Keen, N. T., S. Tamaki, D. Kobayashi, and D. Trollinger. 1988. Improved broad-host-range plasmids for DNA cloning in Gram-negative bacteria. Gene 70:191-197.
18. Koike, I., and A. Hattori, 1975. Energy yield of denitrification: an estimate from growth yield in continuous cultures of Pseudomonas aeruginosa under nitrate, nitrite and nitrous oxide limited conditions. J. Gen. Microbiol. 88:11-19.
19. Kokotek, W., and W. Lotz. 1989. Construction of a lacZ-kanamycin-resistance cassette, useful for site-directed mutagenesis and as a promoter probe. Gene 84:467-471.
20. Kwiatkowski, A., and J. P. Shapleigh. 1996. Requirement of nitric oxidi for induction of genes whose products are involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3. J. Biol. Chem. 271:24382-24388.
21. Maier, T., A. Jacobi, M. Sauter, and A. Bock, 1993. The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-hinding protein. J. Bacteriol. 175:630-635.
22. Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harhor Laboratory Press, Cold Spring Harbor, N.Y.
23. Manoil, C. 1990. Analysis of protein localization by use of gene fusion with complementary properties. J. Bacteriol. 172:1035-1042.
24. +3 and their applications to cellular NO determinations. Anal. Chem. 68:3124-3128.
25. Penfold, R. J., and J. M. Pemberton. 1992. An improved suicide vector for construction of chromosomal insertion mutations in bacteria. Gene 118:145-146.
26. Saraste, M., and J. Castresana. 1994. Cytochrome oxidase evolved by tinkering with denitrification enzymes. FEBS Lett. 341:1-4.
27. Shapleigh, J. P., K. J. P. Davies, and W. J. Payne. 1987. Detergent inhibition of nitric oxide reductase. Biochim. Biophys. Acta 911:334-340.
28. 3-type cytochrome c oxidase of Rhodobacter sphaeroides. Mol. Microbiol. 6:635-642.
29. Shapleigh, J. P., and W. J. Payne. 1985. Nitric oxide-dependent proton translocation in various denitrifiers. J. Bacteriol. 163:837-840.
30. Simon, R., U. Priefer, and A. Pühler. 1983. A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in Gram negative bacteria. Bio/Technology 1:784-791.
31. Solio, M., E. Carafoli, and B. Ludwig. 1982. The cytochrome c oxidase of Paracoccus denitrificans pumps protons in a reconstituted system. J. Biol. Chem. 257:1579-1582.
32. Spiro, S. 1994. The FNR family of transcriptional regulators. Antonie Leeuwenhoek. 66:23-36.
33. Toffanin, A., Q. Wu, M. Maskus, S. Casella, H. D. Abruña, and J. P. Shapleigh. 1996. Characterization of the gene encoding nitrite reductase and the physiological consequences of its expression in the nondenitrifying Rhizobium "lmlysari" strain HCNTl. Appl. Environ. Microbiol. 62:4019-4025.
34. Tosques, I. E., A. V. Kwiatkowski, J. Shi, and J. P. Shapleigh. 1997. Characterization and regulation of the gene encoding nitrite reductase in Rhodobacter sphaeroides 2.4.3. J. Bacteriol. 179:1090-1095.
35. Tosques, I. E., J. Shi, and J. P. Shapleigh. 1996. Cloning and characterization of nnrR. whose product is required for the expression of proteins involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3. J. Baeteriol. 178:4958-4964.
36. van der Oost, J., A. P. N. de Boer, J.-W. L. De Gier, W. G. Zumft, A. B. Stouthamer, and R. J. M. van Spanning. 1994. The heme-copper oxidase family consists of three distinct types of oxidases and is related to nitric oxide reductase. FEMS Microbiol. Lett. 121:1-9.
37. Van Spanning, R. J. M., A. DeBoer, P. N., W. N. M. Reijnders, S. Spiro, H. V. Westerhoff, A. H. Stouthamer, and J. Van der Oust. 1995. Nitrite and nitric oxide reduction in Paracoccus denitrificans is under the control of NnrR, a regulatory protein that belongs to the FNR family of transcriptional activators. FEBS Lett. 360:151-159.
38. Wang, Y., and J. P. Shapleigh. Unpublished data.
39. Wing, H. J., S. M. Williams, and S. J. W. Busby. 1995. Spacing requirement for transcription activation by Escherichia coli FNR protein. J. Bacteriol. 177:6704-6710.
40. Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
41. Yokoyama, K., N. R. Hayashi, H. Arai, S. Y. Chung, Y. Igarashi, and T. Kodama. 1995. Genes encoding RubisCO in Pseudomonas hydrogenothermophila are followed by a novel cbbQ gene similar to nirQ of the denitrification gene cluster from Pseudomonas species. Gene 153:75-79.
42. Zumft, W. G. 1993. The biological role of nitric oxide in bacteria. Arch. Microbiol. 160:253-264.
43. Zumft, W. G. 1992. The denitrifying prokaryotcs, p. 5.54-582. In A. Balows. H. G. Trüper, M. Dworkin. W. Harder, and K.-H. Schleifer (ed.), The prokaryotes. Springer Verlag, Berlin, Germany.
44. Zumft, W. G., C. Braun, and H. Cuypers. 1994. Nitric oxide reductase from Pseudomonas stutzeri: primary structure and gene organization of a novel bacterial cytochrome bc complex. Eur. J. Biochem. 219:481-490.