-
1
-
-
0025773296
-
Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å
-
Pavletich N.P., Pabo C.O. Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 Å Science. 252:1991;809-817.
-
(1991)
Science
, vol.252
, pp. 809-817
-
-
Pavletich, N.P.1
Pabo, C.O.2
-
2
-
-
0032570259
-
Structure-based design of a dimeric zinc finger protein
-
Pomerantz J.L., Wolfe S.A., Pabo C.O. Structure-based design of a dimeric zinc finger protein. Biochemistry. 37:1998;965-970.
-
(1998)
Biochemistry
, vol.37
, pp. 965-970
-
-
Pomerantz, J.L.1
Wolfe, S.A.2
Pabo, C.O.3
-
3
-
-
0034661843
-
Combining structure-based design with phage display to create new Cys(2)His(2) zinc finger dimers
-
Wolfe S.A., Ramm E.I., Pabo C.O. Combining structure-based design with phage display to create new Cys(2)His(2) zinc finger dimers. Struct. Fold. Des. 8:2000;739-750.
-
(2000)
Struct. Fold. Des.
, vol.8
, pp. 739-750
-
-
Wolfe, S.A.1
Ramm, E.I.2
Pabo, C.O.3
-
4
-
-
0034964195
-
Selected peptide extension contacts hydrophobic patch on neighboring zinc finger and mediates dimerization on DNA
-
Wang B.S., Grant R.A., Pabo C.O. Selected peptide extension contacts hydrophobic patch on neighboring zinc finger and mediates dimerization on DNA. Nature. Struct. Biol. 8:2001;589-593.
-
(2001)
Nature. Struct. Biol.
, vol.8
, pp. 589-593
-
-
Wang, B.S.1
Grant, R.A.2
Pabo, C.O.3
-
5
-
-
0033578395
-
Dimerization of zinc fingers mediated by peptides evolved in vitro from random sequences
-
Wang B.S., Pabo C.O. Dimerization of zinc fingers mediated by peptides evolved in vitro from random sequences. Proc. Natl Acad. Sci. USA. 96:1999;9568-9573.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 9568-9573
-
-
Wang, B.S.1
Pabo, C.O.2
-
6
-
-
0030903688
-
Design of polydactyl zinc-finger proteins for unique addressing within complex genomesf
-
Liu Q., Segal D.J., Ghiara J.B., Barbas C.F. III. Design of polydactyl zinc-finger proteins for unique addressing within complex genomesf. Proc. Natl Acad. Sci. USA. 94:1997;5525-5530.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 5525-5530
-
-
Liu, Q.1
Segal, D.J.2
Ghiara, J.B.3
Barbas C.F. III4
-
7
-
-
0032539902
-
Getting a handhold on DNA: Design of poly-zinc finger proteins with femtomolar dissociation constants
-
Kim J.S., Pabo C.O. Getting a handhold on DNA: design of poly-zinc finger proteins with femtomolar dissociation constants. Proc. Natl Acad. Sci. USA. 95:1998;2812-2817.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 2812-2817
-
-
Kim, J.S.1
Pabo, C.O.2
-
9
-
-
0026466149
-
Determination of the base recognition positions of zinc fingers from sequence analysis
-
Jacobs G.H. Determination of the base recognition positions of zinc fingers from sequence analysis. EMBO J. 11:1992;4507-4517.
-
(1992)
EMBO J.
, vol.11
, pp. 4507-4517
-
-
Jacobs, G.H.1
-
10
-
-
0028888530
-
Building zinc fingers by selection: Toward a therapeutic application
-
Wu H., Yang W.P., Barbas C.F. III. Building zinc fingers by selection: toward a therapeutic application. Proc. Natl Acad. Sci. USA. 92:1995;344-348.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 344-348
-
-
Wu, H.1
Yang, W.P.2
Barbas C.F. III3
-
11
-
-
0032578492
-
Artificial nine zinc-finger peptide with 30 base-pair binding sites
-
Kamiuchi T., Abe E., Imanishi M., Kaji T., Nagaoka M., Sugiura Y. Artificial nine zinc-finger peptide with 30 base-pair binding sites. Biochemistry. 37:1998;13827-13834.
-
(1998)
Biochemistry
, vol.37
, pp. 13827-13834
-
-
Kamiuchi, T.1
Abe, E.2
Imanishi, M.3
Kaji, T.4
Nagaoka, M.5
Sugiura, Y.6
-
12
-
-
0034681918
-
DNA-bending finger: Artificial design of 6-zinc finger peptides with polyglycine linker and induction of DNA bending
-
Imanishi M., Hori Y., Nagaoka M., Sugiura Y. DNA-bending finger: artificial design of 6-zinc finger peptides with polyglycine linker and induction of DNA bending. Biochemistry. 39:2000;4383-4390.
-
(2000)
Biochemistry
, vol.39
, pp. 4383-4390
-
-
Imanishi, M.1
Hori, Y.2
Nagaoka, M.3
Sugiura, Y.4
-
13
-
-
0034696584
-
Determining the DNA bending angle induced by non-specific high mobility group-1 (HMG-1) proteins: A novel method
-
Tang L., Li J., Katz D.S., Feng J.A. Determining the DNA bending angle induced by non-specific high mobility group-1 (HMG-1) proteins: a novel method. Biochemistry. 39:2000;3052-3060.
-
(2000)
Biochemistry
, vol.39
, pp. 3052-3060
-
-
Tang, L.1
Li, J.2
Katz, D.S.3
Feng, J.A.4
-
14
-
-
0035814891
-
Multiconnection of identical zinc finger: Implication for DNA binding affinity and unit modulation of the three zinc finger domain
-
Nagaoka M., Kaji T., Imanishi M., Hori Y., Nomura W., Sugiura Y. Multiconnection of identical zinc finger: implication for DNA binding affinity and unit modulation of the three zinc finger domain. Biochemistry. 40:2001;2932-2941.
-
(2001)
Biochemistry
, vol.40
, pp. 2932-2941
-
-
Nagaoka, M.1
Kaji, T.2
Imanishi, M.3
Hori, Y.4
Nomura, W.5
Sugiura, Y.6
-
15
-
-
0034723158
-
DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers
-
Laity J.H., Dyson H.J., Wright P.E. DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers. J. Mol. Biol. 295:2000;719-727.
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 719-727
-
-
Laity, J.H.1
Dyson, H.J.2
Wright, P.E.3
-
16
-
-
0030751494
-
Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA
-
Foster M.P., Wuttke D.S., Radhakrishnan I., Case D.A., Gottesfeld J.M., Wright P.E. Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA. Nature Struct. Biol. 4:1997;605-608.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 605-608
-
-
Foster, M.P.1
Wuttke, D.S.2
Radhakrishnan, I.3
Case, D.A.4
Gottesfeld, J.M.5
Wright, P.E.6
-
17
-
-
0031576363
-
Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: Determinants of affinity and sequence specificity
-
Wuttke D.S., Foster M.P., Case D.A., Gottesfeld J.M., Wright P.E. Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity. J. Mol. Biol. 273:1997;183-206.
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 183-206
-
-
Wuttke, D.S.1
Foster, M.P.2
Case, D.A.3
Gottesfeld, J.M.4
Wright, P.E.5
-
18
-
-
0026718890
-
Mutations in the zinc fingers of ADR1 that change the specificity of DNA binding and transactivation
-
Thukral S.K., Morrison M.L., Young E.T. Mutations in the zinc fingers of ADR1 that change the specificity of DNA binding and transactivation. Mol. Cell. Biol. 12:1992;2784-2792.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 2784-2792
-
-
Thukral, S.K.1
Morrison, M.L.2
Young, E.T.3
-
19
-
-
0034805083
-
Significant effect of linker sequence on DNA recognition by multi-zinc finger protein
-
Nagaoka M., Nomura W., Shiraishi Y., Sugiura Y. Significant effect of linker sequence on DNA recognition by multi-zinc finger protein. Biochem. Biophys. Res. Commun. 282:2001;1001-1007.
-
(2001)
Biochem. Biophys. Res. Commun.
, vol.282
, pp. 1001-1007
-
-
Nagaoka, M.1
Nomura, W.2
Shiraishi, Y.3
Sugiura, Y.4
-
20
-
-
0027327521
-
A role in DNA binding for the linker sequences of the first three zinc fingers of TFIIIA
-
Choo Y., Klug A. A role in DNA binding for the linker sequences of the first three zinc fingers of TFIIIA. Nucl. Acids Res. 21:1993;3341-3346.
-
(1993)
Nucl. Acids Res.
, vol.21
, pp. 3341-3346
-
-
Choo, Y.1
Klug, A.2
-
21
-
-
0028143727
-
Relative contributions of the zinc fingers of transcription factor IIIA to the energetics of DNA binding
-
Clemens K.R., Zhang P., Liao X., McBryant S.J., Wright P.E., Gottesfeld J.M. Relative contributions of the zinc fingers of transcription factor IIIA to the energetics of DNA binding. J. Mol. Biol. 244:1994;23-35.
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 23-35
-
-
Clemens, K.R.1
Zhang, P.2
Liao, X.3
McBryant, S.J.4
Wright, P.E.5
Gottesfeld, J.M.6
-
22
-
-
0032004598
-
The role of zinc finger linkers in p43 and TFIIIA binding to 5S rRNA and DNA
-
Ryan R.F., Darby M.K. The role of zinc finger linkers in p43 and TFIIIA binding to 5S rRNA and DNA. Nucl. Acids Res. 26:1998;703-709.
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 703-709
-
-
Ryan, R.F.1
Darby, M.K.2
-
23
-
-
0034625057
-
Alternative splicing of Wilms' tumor suppressor protein modulates DNA binding activity through isoform-specific DNA-induced conformational changes
-
Laity J.H., Chung J., Dyson H.J., Wright P.E. Alternative splicing of Wilms' tumor suppressor protein modulates DNA binding activity through isoform-specific DNA-induced conformational changes. Biochemistry. 39:2000;5341-5348.
-
(2000)
Biochemistry
, vol.39
, pp. 5341-5348
-
-
Laity, J.H.1
Chung, J.2
Dyson, H.J.3
Wright, P.E.4
-
24
-
-
0035852739
-
Improved DNA binding specificity from polyzinc finger peptides by using strings of two-finger units
-
Moore M., Klug A., Choo Y. Improved DNA binding specificity from polyzinc finger peptides by using strings of two-finger units. Proc. Natl Acad. Sci. USA. 98:2001;1437-1441.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 1437-1441
-
-
Moore, M.1
Klug, A.2
Choo, Y.3
-
25
-
-
0030587774
-
Zif268 protein-DNA complex refined at 1.6 Å: A model system for understanding zinc finger-DNA interactions
-
Elrod-Erickson M., Rould M.A., Nekludova L., Pabo C.O. Zif268 protein-DNA complex refined at 1.6 Å: a model system for understanding zinc finger-DNA interactions. Structure. 4:1996;1171-1180.
-
(1996)
Structure
, vol.4
, pp. 1171-1180
-
-
Elrod-Erickson, M.1
Rould, M.A.2
Nekludova, L.3
Pabo, C.O.4
-
26
-
-
0032522662
-
High-resolution structures of variant Zif268-DNA complexes: Implications for understanding zinc finger-DNA recognition
-
Elrod-Erickson M., Benson T.E., Pabo C.O. High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition. Structure. 6:1998;451-464.
-
(1998)
Structure
, vol.6
, pp. 451-464
-
-
Elrod-Erickson, M.1
Benson, T.E.2
Pabo, C.O.3
-
27
-
-
0027423758
-
Crystal structure of a five-finger GLI-DNA complex: New perspectives on zinc fingers
-
Pavletich N.P., Pabo C.O. Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers. Science. 261:1993;1701-1707.
-
(1993)
Science
, vol.261
, pp. 1701-1707
-
-
Pavletich, N.P.1
Pabo, C.O.2
-
28
-
-
0029644940
-
Where freedom is given, liberties are taken
-
Kleywegt G.J., Jones T.A. Where freedom is given, liberties are taken. Structure. 3:1995;535-540.
-
(1995)
Structure
, vol.3
, pp. 535-540
-
-
Kleywegt, G.J.1
Jones, T.A.2
-
29
-
-
0001099937
-
Traitement Statistique des Erreurs dans la Determination des Structures Cristallines
-
Luzatti P.V. Traitement Statistique des Erreurs dans la Determination des Structures Cristallines. Acta Crystallog. 5:1952;802-810.
-
(1952)
Acta Crystallog.
, vol.5
, pp. 802-810
-
-
Luzatti, P.V.1
-
30
-
-
0033656801
-
Energetics of the specific binding interaction of the first three zinc fingers of the transcription factor TFIIIA with its cognate DNA sequence
-
Liggins J.R., Privalov P.L. Energetics of the specific binding interaction of the first three zinc fingers of the transcription factor TFIIIA with its cognate DNA sequence. Proteins: Struct. Funct. Genet. Suppl. 4:2000;50-62.
-
(2000)
Proteins: Struct. Funct. Genet. Suppl.
, vol.4
, pp. 50-62
-
-
Liggins, J.R.1
Privalov, P.L.2
-
31
-
-
0028200262
-
Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules
-
Klemm J.D., Rould M.A., Aurora R., Herr W., Pabo C.O. Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules. Cell. 77:1994;21-32.
-
(1994)
Cell
, vol.77
, pp. 21-32
-
-
Klemm, J.D.1
Rould, M.A.2
Aurora, R.3
Herr, W.4
Pabo, C.O.5
-
32
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Charles, W., Carter, J. & Sweet, R. Academic Press, San Diego
-
Otwinowski, Z. & Minor, W. (1997). Processing of X-ray diffraction data collected in oscillation mode. In Methods in Enzymology (Charles, W., Carter, J. & Sweet, R., eds), Vol. 276, pp. 307-326, Academic Press, San Diego.
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
33
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein F.C., Koetzle T.F., Williams G.J., Meyer E.E. Jr, Brice M.D., Rodgers J.R., et al. The Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112:1977;535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer E.E., Jr.4
Brice, M.D.5
Rodgers, J.R.6
-
34
-
-
0034517589
-
An approach to multi-copy search in molecular replacement
-
Pt 12
-
Vagin A., Teplyakov A. An approach to multi-copy search in molecular replacement. Acta Crystallog. D Biol. Crystallog. 56:2000;1622-1624. Pt 12.
-
(2000)
Acta Crystallog. D Biol. Crystallog.
, vol.56
, pp. 1622-1624
-
-
Vagin, A.1
Teplyakov, A.2
-
35
-
-
3543012707
-
Crystallography NMR system: A new software suite for macromolecular structure determination
-
Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography NMR system: a new software suite for macromolecular structure determination. Acta Crystallog. D Biol. Crystallog. 54:1998;905-921.
-
(1998)
Acta Crystallog. D Biol. Crystallog.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
-
36
-
-
84944812409
-
Improved fourier coefficients for maps using phases from partial structures with errors
-
Read, R. J. (1986). Improved Fourier coefficients for maps using phases from partial structures with errors. Acta Crystallog. A, 42, 140-149.
-
(1986)
Acta Crystallog. A
, vol.42
, pp. 140-149
-
-
Read, R.J.1
-
37
-
-
84889120137
-
Improved methods for binding protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard M. Improved methods for binding protein models in electron density maps and the location of errors in these models. Acta Crystallog. A. 47:1991;110-119.
-
(1991)
Acta Crystallog. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
38
-
-
0030986177
-
Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement
-
Adams P.D., Pannu N.S., Read R.J., Brünger A.T. Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement. Proc. Natl Acad. Sci. USA. 94:1997;5018-5023.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 5018-5023
-
-
Adams, P.D.1
Pannu, N.S.2
Read, R.J.3
Brünger, A.T.4
-
39
-
-
0035788101
-
Implementation of molecular replacement in AMoRe
-
Navaza J. Implementation of molecular replacement in AMoRe. Acta Crystallog. D Biol. Crystallog. 57:2001;1367-1372.
-
(2001)
Acta Crystallog. D Biol. Crystallog.
, vol.57
, pp. 1367-1372
-
-
Navaza, J.1
-
40
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov G.N., Vagin A.A., Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallog. D. 53:1997;240-255.
-
(1997)
Acta Crystallog. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
|