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Volumn 46, Issue 15, 2003, Pages 3314-3325

A computational model of binding thermodynamics: The design of cyclin-dependent kinase 2 inhibitors

Author keywords

[No Author keywords available]

Indexed keywords

ANTINEOPLASTIC AGENT; CYCLIN DEPENDENT KINASE 2; CYCLIN DEPENDENT KINASE INHIBITOR; FLAVOPIRIDOL; SOLVENT;

EID: 0037479908     PISSN: 00222623     EISSN: None     Source Type: Journal    
DOI: 10.1021/jm0205043     Document Type: Article
Times cited : (39)

References (34)
  • 1
    • 0034642532 scopus 로고    scopus 로고
    • Cyclin-dependent kinase inhibitors: Useful targets in cell cycle regulation
    • Sielecki, T. M.; Boylan, J. F.; Benfield, P. A.; Trainor, G. L. Cyclin-dependent kinase inhibitors: useful targets in cell cycle regulation. J. Med. Chem. 2000, 43, 1-18.
    • (2000) J. Med. Chem. , vol.43 , pp. 1-18
    • Sielecki, T.M.1    Boylan, J.F.2    Benfield, P.A.3    Trainor, G.L.4
  • 3
    • 0033760789 scopus 로고    scopus 로고
    • Inhibitors of cyclin-dependent kinases as anti-cancer therapeutics
    • Fischer, P. M.; Lane, D. P. Inhibitors of cyclin-dependent kinases as anti-cancer therapeutics. Curr. Med. Chem. 2000, 7, 1213-1245.
    • (2000) Curr. Med. Chem. , vol.7 , pp. 1213-1245
    • Fischer, P.M.1    Lane, D.P.2
  • 7
    • 0035990910 scopus 로고    scopus 로고
    • Designing specific protein kinase inhibitors: Insights from computer simulations and comparative sequence/structure analysis
    • Gould, C.; Wong, C. F. Designing specific protein kinase inhibitors: insights from computer simulations and comparative sequence/structure analysis. Pharmacol. Ther. 2002, 93, 169-178.
    • (2002) Pharmacol. Ther. , vol.93 , pp. 169-178
    • Gould, C.1    Wong, C.F.2
  • 8
    • 0003790282 scopus 로고    scopus 로고
    • Sensitivity analysis in biomolecular simulation
    • Wiley-VCH: New York
    • Wong, C. F.; Thacher, T.; Rabitz, H. Sensitivity analysis in biomolecular simulation. Reviews in Computational Chemistry; Wiley-VCH: New York, 1998; pp 281-326.
    • (1998) Reviews in Computational Chemistry , pp. 281-326
    • Wong, C.F.1    Thacher, T.2    Rabitz, H.3
  • 10
    • 84986492477 scopus 로고
    • Atomic charges derived from semiempirical methods
    • Besler, B. H.; Merz, K. M.; Kollman, P. A. Atomic Charges Derived from Semiempirical Methods. J. Comput. Chem. 1990, 11, 431-439.
    • (1990) J. Comput. Chem. , vol.11 , pp. 431-439
    • Besler, B.H.1    Merz, K.M.2    Kollman, P.A.3
  • 11
    • 84986468608 scopus 로고
    • An approach to computing electrostatic charges for molecules
    • Singh, U. C.; Kollman, P. A. An approach to computing electrostatic charges for molecules. J. Comput. Chem. 1984, 5, 129-145.
    • (1984) J. Comput. Chem. , vol.5 , pp. 129-145
    • Singh, U.C.1    Kollman, P.A.2
  • 14
    • 0026124585 scopus 로고
    • Electrostatics and diffusion of molecules in solution-simulations with the University-of-Houston-Brownian Dynamics Program
    • Davis, M. E.; Madura, J. D.; Luty, B. A.; McCammon, J. A. Electrostatics and diffusion of molecules in solution-simulations with the University-of-Houston-Brownian Dynamics Program. Comput. Phys. Commun. 1991, 62, 187-197.
    • (1991) Comput. Phys. Commun. , vol.62 , pp. 187-197
    • Davis, M.E.1    Madura, J.D.2    Luty, B.A.3    McCammon, J.A.4
  • 16
    • 0038692534 scopus 로고    scopus 로고
    • Accelrys Inc.: San Diego, CA
    • Quanta; Accelrys Inc.: San Diego, CA, 2000.
    • (2000) Quanta
  • 20
    • 0004201905 scopus 로고    scopus 로고
    • Accelrys Inc.: San Diego, CA
    • InsightII; Accelrys Inc.: San Diego, CA, 2000.
    • (2000) InsightII
  • 21
    • 0001041959 scopus 로고    scopus 로고
    • Fast efficient generation of high-quality atomic charges. AM1-BCC model: I. Method
    • Jakalian, A.; Bush, B. L.; Jack, D. B.; Bayly, C. I. Fast efficient generation of high-quality atomic Charges. AM1-BCC model: I. Method. J. Comput. Chem. 2000, 21, 132-146.
    • (2000) J. Comput. Chem. , vol.21 , pp. 132-146
    • Jakalian, A.1    Bush, B.L.2    Jack, D.B.3    Bayly, C.I.4
  • 22
    • 0023647143 scopus 로고
    • Complementation used to clone a human homologue of the fission yeast cell cycle control gene cdc2
    • Lee, M. G.; Nurse, P. Complementation used to clone a human homologue of the fission yeast cell cycle control gene cdc2. Nature 1987, 327, 31-35.
    • (1987) Nature , vol.327 , pp. 31-35
    • Lee, M.G.1    Nurse, P.2
  • 23
    • 0023110055 scopus 로고
    • Homology probing: Identification of cDNA clones encoding members of the protein-serine kinase family
    • Hanks, S. K. Homology probing: identification of cDNA clones encoding members of the protein-serine kinase family. Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 388-392.
    • (1987) Proc. Natl. Acad. Sci. U.S.A. , vol.84 , pp. 388-392
    • Hanks, S.K.1
  • 24
    • 0032918006 scopus 로고    scopus 로고
    • The protein kinase resource and other bioinformation resources
    • Smith, C. M. The protein kinase resource and other bioinformation resources. Prog. Biophys. Mol. Biol. 1999, 71, 525-533.
    • (1999) Prog. Biophys. Mol. Biol. , vol.71 , pp. 525-533
    • Smith, C.M.1
  • 26
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D.; Higgins, D. G.; Gibson, T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 27
    • 0026345394 scopus 로고
    • Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification of family members
    • Hanks, S.; Quinn, A. M. Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification of family members. Methods Enzymol. 1991, 200, 38-62.
    • (1991) Methods Enzymol. , vol.200 , pp. 38-62
    • Hanks, S.1    Quinn, A.M.2
  • 30
    • 0030992914 scopus 로고    scopus 로고
    • Protein tyrosine kinase inhibitors in cancer treatment
    • Traxler, P. M. Protein tyrosine kinase inhibitors in cancer treatment. Expert Opin. Ther. Pat. 1997, 7, 571-588.
    • (1997) Expert Opin. Ther. Pat. , vol.7 , pp. 571-588
    • Traxler, P.M.1
  • 32
    • 0028454828 scopus 로고
    • The development of a simple empirical scoring function to estimate the binding constant for a protein ligand complex of known three-dimensional structure
    • Böhm, H. J. The development of a simple empirical scoring function to estimate the binding constant for a protein ligand complex of known three-dimensional structure. J. Comput.-Aided Mol. Des. 1994, 8, 243-256.
    • (1994) J. Comput.-Aided Mol. Des. , vol.8 , pp. 243-256
    • Böhm, H.J.1
  • 33
    • 11644261806 scopus 로고    scopus 로고
    • Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
    • Morris, G. M.; Goodsell, D. S.; Halliday, R. S.; Huey, R.; Hart, W. E.; Belew, R. K.; Olson, A. J. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem. 1998, 19, 1639-1662.
    • (1998) J. Comput. Chem. , vol.19 , pp. 1639-1662
    • Morris, G.M.1    Goodsell, D.S.2    Halliday, R.S.3    Huey, R.4    Hart, W.E.5    Belew, R.K.6    Olson, A.J.7
  • 34
    • 0036724251 scopus 로고    scopus 로고
    • Entropy loss of hydroxyl groups of balanol upon binding to protein kinase A
    • Gidofalvi, G.; Wong, C. F.; McCammon, J. A. Entropy loss of hydroxyl groups of balanol upon binding to protein kinase A. J. Chem. Educ. 2002, 79, 1122-1126.
    • (2002) J. Chem. Educ. , vol.79 , pp. 1122-1126
    • Gidofalvi, G.1    Wong, C.F.2    McCammon, J.A.3


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