-
1
-
-
0034642532
-
Cyclin-dependent kinase inhibitors: Useful targets in cell cycle regulation
-
Sielecki, T. M.; Boylan, J. F.; Benfield, P. A.; Trainor, G. L. Cyclin-dependent kinase inhibitors: useful targets in cell cycle regulation. J. Med. Chem. 2000, 43, 1-18.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 1-18
-
-
Sielecki, T.M.1
Boylan, J.F.2
Benfield, P.A.3
Trainor, G.L.4
-
2
-
-
0028176485
-
Potent inhibition of CDC2 kinase activity by the flavonoid L86-8275
-
Losiewicz, M. D.; Carlson, B. A.; Kaur, G.; Sausville, E. A.; Worland, P. J. Potent inhibition of CDC2 kinase activity by the flavonoid L86-8275. Biochem. Biophys. Res. Commun. 1994, 201, 589-595.
-
(1994)
Biochem. Biophys. Res. Commun.
, vol.201
, pp. 589-595
-
-
Losiewicz, M.D.1
Carlson, B.A.2
Kaur, G.3
Sausville, E.A.4
Worland, P.J.5
-
3
-
-
0033760789
-
Inhibitors of cyclin-dependent kinases as anti-cancer therapeutics
-
Fischer, P. M.; Lane, D. P. Inhibitors of cyclin-dependent kinases as anti-cancer therapeutics. Curr. Med. Chem. 2000, 7, 1213-1245.
-
(2000)
Curr. Med. Chem.
, vol.7
, pp. 1213-1245
-
-
Fischer, P.M.1
Lane, D.P.2
-
4
-
-
0036295220
-
Structural basis for inhibition of cyclin-dependent kinase 9 by flavopiridol
-
de Azevedo, W. F., Jr.; Canduri, F.; da Silveira, N. J. Structural basis for inhibition of cyclin-dependent kinase 9 by flavopiridol. Biochem. Biophys. Res. Commun. 2002, 293, 566-571.
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.293
, pp. 566-571
-
-
De Azevedo W.F., Jr.1
Canduri, F.2
Da Silveira, N.J.3
-
5
-
-
0029993339
-
Structural basis for specificity and potency of a flavonoid inhibitor of human CDK2, a cell cycle kinase
-
De Azevedo, W. F., Jr.; Mueller-Dieckmann, H. J.; Schulze-Gahmen, U.; Worland, P. J.; Sausville, E.; Kim, S. H. Structural basis for specificity and potency of a flavonoid inhibitor of human CDK2, a cell cycle kinase. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 2735-2740.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 2735-2740
-
-
De Azevedo W.F., Jr.1
Mueller-Dieckmann, H.J.2
Schulze-Gahmen, U.3
Worland, P.J.4
Sausville, E.5
Kim, S.H.6
-
6
-
-
0035837066
-
Computational analysis of PKA-balanol interactions
-
Wong, C. F.; Hünenberger, P. H.; Akamine, P.; Narayana, N.; Diller, T.; McCammon, J. A.; Taylor, S.; Xuong, N. H. Computational analysis of PKA-balanol interactions. J. Med. Chem. 2001, 44, 1530-1539.
-
(2001)
J. Med. Chem.
, vol.44
, pp. 1530-1539
-
-
Wong, C.F.1
Hünenberger, P.H.2
Akamine, P.3
Narayana, N.4
Diller, T.5
McCammon, J.A.6
Taylor, S.7
Xuong, N.H.8
-
7
-
-
0035990910
-
Designing specific protein kinase inhibitors: Insights from computer simulations and comparative sequence/structure analysis
-
Gould, C.; Wong, C. F. Designing specific protein kinase inhibitors: insights from computer simulations and comparative sequence/structure analysis. Pharmacol. Ther. 2002, 93, 169-178.
-
(2002)
Pharmacol. Ther.
, vol.93
, pp. 169-178
-
-
Gould, C.1
Wong, C.F.2
-
9
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell, A. D.; Bashford, D.; Bellott, M.; Dunbrack, R. L.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; JosephMcCarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E.; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; WiorkiewiczKuczera, J.; Yin, D.; Karplus, M. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phy. Chem. B 1998, 102, 3586-3616.
-
(1998)
J. Phy. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack, R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
JosephMcCarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
WiorkiewiczKuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
10
-
-
84986492477
-
Atomic charges derived from semiempirical methods
-
Besler, B. H.; Merz, K. M.; Kollman, P. A. Atomic Charges Derived from Semiempirical Methods. J. Comput. Chem. 1990, 11, 431-439.
-
(1990)
J. Comput. Chem.
, vol.11
, pp. 431-439
-
-
Besler, B.H.1
Merz, K.M.2
Kollman, P.A.3
-
11
-
-
84986468608
-
An approach to computing electrostatic charges for molecules
-
Singh, U. C.; Kollman, P. A. An approach to computing electrostatic charges for molecules. J. Comput. Chem. 1984, 5, 129-145.
-
(1984)
J. Comput. Chem.
, vol.5
, pp. 129-145
-
-
Singh, U.C.1
Kollman, P.A.2
-
12
-
-
0004133516
-
-
Gaussian, Inc.: Pittsburgh, PA
-
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Zakrzewski, V. G.; Montgomery, J. A., Jr.; Stratmann, R. E.; Burant, J. C.; Dapprich, S.; Millam, J. M.; Daniels, A. D.; Kudin, K. N.; Strain, M. C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi, R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.; Petersson, G. A.; Ayala, P. Y.; Cui, Q.; Morokuma, K.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Cioslowski, J.; Ortiz, J. V.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Gomperts, R.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Gonzalez, C.; Challacombe, M.; Gill, P. M. W.; Johnson, B. G.; Chen, W.; Wong, M. W.; Andres, J. L.; Head-Gordon, M.; Replogle, E. S.; Pople, J. A. Gaussian 98; Gaussian, Inc.: Pittsburgh, PA, 1998.
-
(1998)
Gaussian 98
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery J.A., Jr.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Malick, D.K.30
Rabuck, A.D.31
Raghavachari, K.32
Foresman, J.B.33
Cioslowski, J.34
Ortiz, J.V.35
Stefanov, B.B.36
Liu, G.37
Liashenko, A.38
Piskorz, P.39
Komaromi, I.40
Gomperts, R.41
Martin, R.L.42
Fox, D.J.43
Keith, T.44
Al-Laham, M.A.45
Peng, C.Y.46
Nanayakkara, A.47
Gonzalez, C.48
Challacombe, M.49
Gill, P.M.W.50
Johnson, B.G.51
Chen, W.52
Wong, M.W.53
Andres, J.L.54
Head-Gordon, M.55
Replogle, E.S.56
Pople, J.A.57
more..
-
13
-
-
0029633152
-
Electrostatics and diffusion of molecules in solution-simulations with the University of Houston Brownian Dynamics Program
-
Madura, J. D.; Briggs, J. M.; Wade, R. C.; Davis, M. E.; Luty, B. A.; Ilin, A.; Antosiewicz, J.; Gilson, M. K.; Bagheri, B.; Scott, L. R.; McCammon, J. A. Electrostatics and diffusion of molecules in solution-simulations with the University of Houston Brownian Dynamics Program. Comput. Phys. Commun. 1995, 91, 57-95.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 57-95
-
-
Madura, J.D.1
Briggs, J.M.2
Wade, R.C.3
Davis, M.E.4
Luty, B.A.5
Ilin, A.6
Antosiewicz, J.7
Gilson, M.K.8
Bagheri, B.9
Scott, L.R.10
McCammon, J.A.11
-
14
-
-
0026124585
-
Electrostatics and diffusion of molecules in solution-simulations with the University-of-Houston-Brownian Dynamics Program
-
Davis, M. E.; Madura, J. D.; Luty, B. A.; McCammon, J. A. Electrostatics and diffusion of molecules in solution-simulations with the University-of-Houston-Brownian Dynamics Program. Comput. Phys. Commun. 1991, 62, 187-197.
-
(1991)
Comput. Phys. Commun.
, vol.62
, pp. 187-197
-
-
Davis, M.E.1
Madura, J.D.2
Luty, B.A.3
McCammon, J.A.4
-
15
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 1983, 4, 187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
16
-
-
0038692534
-
-
Accelrys Inc.: San Diego, CA
-
Quanta; Accelrys Inc.: San Diego, CA, 2000.
-
(2000)
Quanta
-
-
-
17
-
-
0019883174
-
Affinities of amino acid side chains for solvent water
-
Wolfenden, R.; Andersson, L.; Cullis, P. M.; Southgate, C. C. B. Affinities of amino acid side chains for solvent water. Biochemistry 1981, 20, 849-855.
-
(1981)
Biochemistry
, vol.20
, pp. 849-855
-
-
Wolfenden, R.1
Andersson, L.2
Cullis, P.M.3
Southgate, C.C.B.4
-
20
-
-
0004201905
-
-
Accelrys Inc.: San Diego, CA
-
InsightII; Accelrys Inc.: San Diego, CA, 2000.
-
(2000)
InsightII
-
-
-
21
-
-
0001041959
-
Fast efficient generation of high-quality atomic charges. AM1-BCC model: I. Method
-
Jakalian, A.; Bush, B. L.; Jack, D. B.; Bayly, C. I. Fast efficient generation of high-quality atomic Charges. AM1-BCC model: I. Method. J. Comput. Chem. 2000, 21, 132-146.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 132-146
-
-
Jakalian, A.1
Bush, B.L.2
Jack, D.B.3
Bayly, C.I.4
-
22
-
-
0023647143
-
Complementation used to clone a human homologue of the fission yeast cell cycle control gene cdc2
-
Lee, M. G.; Nurse, P. Complementation used to clone a human homologue of the fission yeast cell cycle control gene cdc2. Nature 1987, 327, 31-35.
-
(1987)
Nature
, vol.327
, pp. 31-35
-
-
Lee, M.G.1
Nurse, P.2
-
23
-
-
0023110055
-
Homology probing: Identification of cDNA clones encoding members of the protein-serine kinase family
-
Hanks, S. K. Homology probing: identification of cDNA clones encoding members of the protein-serine kinase family. Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 388-392.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 388-392
-
-
Hanks, S.K.1
-
24
-
-
0032918006
-
The protein kinase resource and other bioinformation resources
-
Smith, C. M. The protein kinase resource and other bioinformation resources. Prog. Biophys. Mol. Biol. 1999, 71, 525-533.
-
(1999)
Prog. Biophys. Mol. Biol.
, vol.71
, pp. 525-533
-
-
Smith, C.M.1
-
25
-
-
0030722030
-
The protein kinase resource
-
Smith, C. M.; Shindyalov, I. N.; Veretnik, S.; Gribskov, M.; Taylor, S. S.; Ten Eyck, L. F.; Bourne, P. E. The protein kinase resource. Trends Biochem. Sci. 1997, 22, 444-446.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 444-446
-
-
Smith, C.M.1
Shindyalov, I.N.2
Veretnik, S.3
Gribskov, M.4
Taylor, S.S.5
Ten Eyck, L.F.6
Bourne, P.E.7
-
26
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D.; Higgins, D. G.; Gibson, T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22, 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
27
-
-
0026345394
-
Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification of family members
-
Hanks, S.; Quinn, A. M. Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification of family members. Methods Enzymol. 1991, 200, 38-62.
-
(1991)
Methods Enzymol.
, vol.200
, pp. 38-62
-
-
Hanks, S.1
Quinn, A.M.2
-
28
-
-
0037171721
-
Structure-based design and synthesis of 2-benzylidene-benzofuran-3-ones as flavopiridol mimics
-
Schoepfer, J.; Fretz, H.; Chaudhuri, B.; Muller, L.; Seeber, E.; Meijer, L.; Lozach, O.; Vangrevelinghe, E.; Furet, P. Structure-based design and synthesis of 2-benzylidene-benzofuran-3-ones as flavopiridol mimics. J. Med. Chem. 2002, 45, 1741-1747.
-
(2002)
J. Med. Chem.
, vol.45
, pp. 1741-1747
-
-
Schoepfer, J.1
Fretz, H.2
Chaudhuri, B.3
Muller, L.4
Seeber, E.5
Meijer, L.6
Lozach, O.7
Vangrevelinghe, E.8
Furet, P.9
-
29
-
-
0034597571
-
Thio- and oxoflavopiridols, cyclin-dependent kinase 1-selective inhibitors: Synthesis and biological effects
-
Kim, K. S.; Sack, J. S.; Tokarski, J. S.; Qian, L.; Chao, S. T.; Leith, L.; Kelly, Y. F.; Misra, R. N.; Hunt, J. T.; Kimball, S. D.; Humphreys, W. G.; Wautlet, B. S.; Mulheron, J. G.; Webster, K. R. Thio- and oxoflavopiridols, cyclin-dependent kinase 1-selective inhibitors: synthesis and biological effects. J. Med. Chem. 2000, 43, 4126-4134.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 4126-4134
-
-
Kim, K.S.1
Sack, J.S.2
Tokarski, J.S.3
Qian, L.4
Chao, S.T.5
Leith, L.6
Kelly, Y.F.7
Misra, R.N.8
Hunt, J.T.9
Kimball, S.D.10
Humphreys, W.G.11
Wautlet, B.S.12
Mulheron, J.G.13
Webster, K.R.14
-
30
-
-
0030992914
-
Protein tyrosine kinase inhibitors in cancer treatment
-
Traxler, P. M. Protein tyrosine kinase inhibitors in cancer treatment. Expert Opin. Ther. Pat. 1997, 7, 571-588.
-
(1997)
Expert Opin. Ther. Pat.
, vol.7
, pp. 571-588
-
-
Traxler, P.M.1
-
31
-
-
0034657527
-
Structure-activity relationship studies of flavopiridol analogues
-
Murthi, K. K.; Dubay, M.; McClure, C.; Brizuela, L.; Boisclair, M. D.; Worland, P. J.; Mansuri, M. M.; Pal, K. Structure-activity relationship studies of flavopiridol analogues. Bioorg. Med. Chem. Lett. 2000, 10, 1037-1041.
-
(2000)
Bioorg. Med. Chem. Lett.
, vol.10
, pp. 1037-1041
-
-
Murthi, K.K.1
Dubay, M.2
McClure, C.3
Brizuela, L.4
Boisclair, M.D.5
Worland, P.J.6
Mansuri, M.M.7
Pal, K.8
-
32
-
-
0028454828
-
The development of a simple empirical scoring function to estimate the binding constant for a protein ligand complex of known three-dimensional structure
-
Böhm, H. J. The development of a simple empirical scoring function to estimate the binding constant for a protein ligand complex of known three-dimensional structure. J. Comput.-Aided Mol. Des. 1994, 8, 243-256.
-
(1994)
J. Comput.-Aided Mol. Des.
, vol.8
, pp. 243-256
-
-
Böhm, H.J.1
-
33
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
-
Morris, G. M.; Goodsell, D. S.; Halliday, R. S.; Huey, R.; Hart, W. E.; Belew, R. K.; Olson, A. J. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem. 1998, 19, 1639-1662.
-
(1998)
J. Comput. Chem.
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
34
-
-
0036724251
-
Entropy loss of hydroxyl groups of balanol upon binding to protein kinase A
-
Gidofalvi, G.; Wong, C. F.; McCammon, J. A. Entropy loss of hydroxyl groups of balanol upon binding to protein kinase A. J. Chem. Educ. 2002, 79, 1122-1126.
-
(2002)
J. Chem. Educ.
, vol.79
, pp. 1122-1126
-
-
Gidofalvi, G.1
Wong, C.F.2
McCammon, J.A.3
|