메뉴 건너뛰기




Volumn 22, Issue 8, 2003, Pages 1835-1845

Structure of the GCM domain-DNA complex: A DNA-binding domain with a novel fold and mode of target site recognition

Author keywords

DNA recognition; Glia cells; Transcription factor; X ray crystal structure; Zn binding

Indexed keywords

DNA; GLIA CELL MISSING PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; ZINC ION;

EID: 0037446946     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/cdg182     Document Type: Article
Times cited : (76)

References (50)
  • 1
    • 0029856301 scopus 로고    scopus 로고
    • The gcm-motif: A novel DNA-binding motif conserved in Drosophila and mammals
    • Akiyama, Y., Hosoya, T., Poole, A.M. and Hotta, Y. (1996) The gcm-motif: a novel DNA-binding motif conserved in Drosophila and mammals. Proc. Natl Acad. Sci. USA, 93, 14912-14916.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 14912-14916
    • Akiyama, Y.1    Hosoya, T.2    Poole, A.M.3    Hotta, Y.4
  • 2
    • 0033834205 scopus 로고    scopus 로고
    • Mechanism of glia-neuron cell-fate switch in the Drosophila thoracic neuroblast 6-4 lineage
    • Akiyama-Oda, Y., Hotta, Y., Tsukita, S. and Oda, H. (2000) Mechanism of glia-neuron cell-fate switch in the Drosophila thoracic neuroblast 6-4 lineage. Development, 127, 3513-3522.
    • (2000) Development , vol.127 , pp. 3513-3522
    • Akiyama-Oda, Y.1    Hotta, Y.2    Tsukita, S.3    Oda, H.4
  • 3
    • 0032530719 scopus 로고    scopus 로고
    • A novel mode of DNA recognition by a β-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA
    • Allen, M.D., Yamasaki, K., Ohme-Takagi, M., Tateno, M. and Suzuki, M. (1998) A novel mode of DNA recognition by a β-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO J., 17, 5484-5496.
    • (1998) EMBO J. , vol.17 , pp. 5484-5496
    • Allen, M.D.1    Yamasaki, K.2    Ohme-Takagi, M.3    Tateno, M.4    Suzuki, M.5
  • 4
    • 0033935126 scopus 로고    scopus 로고
    • The glial cells missing-1 protein is essential for branching morphogenesis in the chorioallantoic placenta
    • Anson-Cartwright, L., Dawson, K., Holmyard, D., Fisher, S.J., Lazzarini, R.A. and Cross, J.C. (2000) The glial cells missing-1 protein is essential for branching morphogenesis in the chorioallantoic placenta. Nat. Genet., 25, 311-314.
    • (2000) Nat. Genet. , vol.25 , pp. 311-314
    • Anson-Cartwright, L.1    Dawson, K.2    Holmyard, D.3    Fisher, S.J.4    Lazzarini, R.A.5    Cross, J.C.6
  • 5
    • 0029866646 scopus 로고    scopus 로고
    • The galvanization of biology: A growing appreciation for the roles of zinc
    • Berg, J.M. and Shi, Y. (1996) The galvanization of biology: a growing appreciation for the roles of zinc. Science, 271, 1081-1085.
    • (1996) Science , vol.271 , pp. 1081-1085
    • Berg, J.M.1    Shi, Y.2
  • 6
    • 3543012707 scopus 로고    scopus 로고
    • Crystallography and NMR system: A new software for macromolecular structure determination
    • Brünger, A.T. et al. (1998) Crystallography and NMR system: a new software for macromolecular structure determination. Acta Crystallogr. C, 54, 905-921.
    • (1998) Acta Crystallogr. C , vol.54 , pp. 905-921
    • Brünger, A.T.1
  • 8
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • CCP4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr, D, 50, 760-776.
    • (1994) Acta Crystallogr. D , vol.50 , pp. 760-776
  • 11
    • 0034697994 scopus 로고    scopus 로고
    • Major groove recognition by three-stranded β-sheets: Affinity determinants and conserved structural features
    • Connolly, K.M., Ilangovan, U., Wojciak, J.M., Iwahara, M. and Clubb, R.T. (2000) Major groove recognition by three-stranded β-sheets: affinity determinants and conserved structural features. J. Mol. Biol., 300, 841-856.
    • (2000) J. Mol. Biol. , vol.300 , pp. 841-856
    • Connolly, K.M.1    Ilangovan, U.2    Wojciak, J.M.3    Iwahara, M.4    Clubb, R.T.5
  • 12
    • 0343907251 scopus 로고    scopus 로고
    • Engineering of diffraction-quality crystals of the NF-κB P52 homodimer:DNA complex
    • Cramer, P. and Müller, C.W. (1997) Engineering of diffraction-quality crystals of the NF-κB P52 homodimer:DNA complex. FEBS Lett., 405, 373-377.
    • (1997) FEBS Lett. , vol.405 , pp. 373-377
    • Cramer, P.1    Müller, C.W.2
  • 13
    • 0031058188 scopus 로고    scopus 로고
    • Maximum-likelihood heavy-atom parameter refinement for the multiple isomorphous replacement and multiwavelength anomalous diffraction methods
    • de La Fortelle, E. and Bricogne, G. (1997) Maximum-likelihood heavy-atom parameter refinement for the multiple isomorphous replacement and multiwavelength anomalous diffraction methods. Methods Enzymol., 276, 472-494.
    • (1997) Methods Enzymol. , vol.276 , pp. 472-494
    • De La Fortelle, E.1    Bricogne, G.2
  • 14
    • 0034772381 scopus 로고    scopus 로고
    • Familial isolated hypoparathyroidism caused by a mutation in the gene for the transcription factor GCMB
    • Ding, C., Buckingham, B. and Levine, M.A. (2001) Familial isolated hypoparathyroidism caused by a mutation in the gene for the transcription factor GCMB. J. Clin. Invest., 108, 1215-1220.
    • (2001) J. Clin. Invest. , vol.108 , pp. 1215-1220
    • Ding, C.1    Buckingham, B.2    Levine, M.A.3
  • 15
    • 0030003963 scopus 로고    scopus 로고
    • Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA
    • El Hassan, M.A. and Calladine, C.R. (1996) Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA. J. Mol. Biol., 259, 95-103.
    • (1996) J. Mol. Biol. , vol.259 , pp. 95-103
    • El Hassan, M.A.1    Calladine, C.R.2
  • 16
    • 0030587774 scopus 로고    scopus 로고
    • Zif268 protein-DNA complex refined at 1.6 Å: A model system for understanding zinc finger-DNA interactions
    • Elrod-Erickson, M., Rould, M.A., Nekludova, L. and Pabo, C.O. (1996) Zif268 protein-DNA complex refined at 1.6 Å: a model system for understanding zinc finger-DNA interactions. Structure, 4, 1171-1180.
    • (1996) Structure , vol.4 , pp. 1171-1180
    • Elrod-Erickson, M.1    Rould, M.A.2    Nekludova, L.3    Pabo, C.O.4
  • 17
    • 0033119938 scopus 로고    scopus 로고
    • Further additions to MolScript version 1.4, including reading and contouring of electron-density maps
    • Esnouf, R.M. (1999) Further additions to MolScript version 1.4, including reading and contouring of electron-density maps. Acta Crystallogr. D, 55, 938-940.
    • (1999) Acta Crystallogr. D , vol.55 , pp. 938-940
    • Esnouf, R.M.1
  • 18
    • 0032474760 scopus 로고    scopus 로고
    • DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI
    • Flick, K.E., Jurica, M.S., Monnat, R.J., Jr and Stoddard, B.L. (1998) DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI. Nature, 394, 96-101.
    • (1998) Nature , vol.394 , pp. 96-101
    • Flick, K.E.1    Jurica, M.S.2    Monnat R.J., Jr.3    Stoddard, B.L.4
  • 19
    • 0034757448 scopus 로고    scopus 로고
    • Asymmetric Prospero localization is required to generate mixed neuronal/glial lineages in the Drosophila CNS
    • Freeman, M.R. and Doe, C.Q. (2001) Asymmetric Prospero localization is required to generate mixed neuronal/glial lineages in the Drosophila CNS. Development, 128, 4103-4112.
    • (2001) Development , vol.128 , pp. 4103-4112
    • Freeman, M.R.1    Doe, C.Q.2
  • 20
    • 0039985836 scopus 로고    scopus 로고
    • The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator
    • Gomis-Ruth, F.X. et al. (1998) The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator. EMBO J., 17, 7404-7415.
    • (1998) EMBO J. , vol.17 , pp. 7404-7415
    • Gomis-Ruth, F.X.1
  • 21
    • 0034644149 scopus 로고    scopus 로고
    • Genetic ablation of parathyroid glands reveals another source of parathyroid hormone
    • Gunther, T. et al. (2000) Genetic ablation of parathyroid glands reveals another source of parathyroid hormone. Nature, 406, 199-203.
    • (2000) Nature , vol.406 , pp. 199-203
    • Gunther, T.1
  • 22
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm, L. and Sander, C. (1993) Protein structure comparison by alignment of distance matrices. J. Mol. Biol., 233, 123-138.
    • (1993) J. Mol. Biol. , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 23
    • 0029087476 scopus 로고
    • Glial cells missing: A binary switch between neuronal and glial determination in Drosophila
    • Hosoya, T., Takizawa, K., Nitta, K. and Hotta, Y. (1995) Glial cells missing: a binary switch between neuronal and glial determination in Drosophila. Cell, 82, 1025-1036.
    • (1995) Cell , vol.82 , pp. 1025-1036
    • Hosoya, T.1    Takizawa, K.2    Nitta, K.3    Hotta, Y.4
  • 24
    • 0029084787 scopus 로고
    • Glial cells missing: A genetic switch that controls glial versus neuronal fate
    • Jones, B.W., Fetter, R.D., Tear, G. and Goodman, C.S. (1995) Glial cells missing: a genetic switch that controls glial versus neuronal fate. Cell, 82, 1013-1023.
    • (1995) Cell , vol.82 , pp. 1013-1023
    • Jones, B.W.1    Fetter, R.D.2    Tear, G.3    Goodman, C.S.4
  • 25
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T.A., Zhou, J.Y., Cowan, S.W. and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A, 47, 110-119.
    • (1991) Acta Crystallogr. A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zhou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 26
    • 85046526624 scopus 로고
    • Evaluation of single-crystal X-ray diffraction data from a position-sensitive detector
    • Kabsch, W. (1988) Evaluation of single-crystal X-ray diffraction data from a position-sensitive detector. J. Appl. Crystallogr., 21, 916-924.
    • (1988) J. Appl. Crystallogr. , vol.21 , pp. 916-924
    • Kabsch, W.1
  • 27
    • 0024814234 scopus 로고
    • Bending of DNA by gene-regulatory proteins: Construction and use of a DNA bending vector
    • Kim, J., Zwieb, C., Wu, C. and Adhya, S. (1989) Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector. Gene, 85, 15-23.
    • (1989) Gene , vol.85 , pp. 15-23
    • Kim, J.1    Zwieb, C.2    Wu, C.3    Adhya, S.4
  • 28
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R.A., MacArthur, M.W., Moss, D.S. and Thornton, J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr., 26, 283-291.
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 29
    • 0024058085 scopus 로고
    • The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
    • Lavery, R. and Sklenar, H. (1988) The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. Dynam., 6, 63-91.
    • (1988) J. Biomol. Struct. Dynam. , vol.6 , pp. 63-91
    • Lavery, R.1    Sklenar, H.2
  • 30
    • 0032476657 scopus 로고    scopus 로고
    • Positive autoregulation of the glial promoting factor glide/gcm
    • Miller, A.A., Bernardoni, R. and Giangrande, A. (1998) Positive autoregulation of the glial promoting factor glide/gcm. EMBO J., 17, 6316-6326.
    • (1998) EMBO J. , vol.17 , pp. 6316-6326
    • Miller, A.A.1    Bernardoni, R.2    Giangrande, A.3
  • 31
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol., 276, 307-326.
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 32
    • 0034957050 scopus 로고    scopus 로고
    • A novel mode of asymmetric division identifies the fly neuroglioblast 6-4T
    • Ragone, G., Bernardoni, R. and Giangrande, A. (2001) A novel mode of asymmetric division identifies the fly neuroglioblast 6-4T. Dev. Biol, 235, 74-85.
    • (2001) Dev. Biol. , vol.235 , pp. 74-85
    • Ragone, G.1    Bernardoni, R.2    Giangrande, A.3
  • 33
    • 0037333940 scopus 로고    scopus 로고
    • Transcriptional regulation of glial cell specification
    • Ragone, G. et al. (2003) Transcriptional regulation of glial cell specification. Dev. Biol. 255, 138-150.
    • (2003) Dev. Biol , vol.255 , pp. 138-150
    • Ragone, G.1
  • 34
    • 0036607585 scopus 로고    scopus 로고
    • New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization
    • Ransick, A., Rast, J.P., Minokawa, T., Calestani, C. and Davidson, E.H. (2002) New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization. Dev. Biol., 246, 132-147.
    • (2002) Dev. Biol. , vol.246 , pp. 132-147
    • Ransick, A.1    Rast, J.P.2    Minokawa, T.3    Calestani, C.4    Davidson, E.H.5
  • 35
    • 0028177303 scopus 로고
    • DNA recognition by β-sheets in the Arc repressor-operator crystal structure
    • Raumann, B.E., Rould, M.A., Pabo, C.O. and Sauer, R.T. (1994) DNA recognition by β-sheets in the Arc repressor-operator crystal structure. Nature, 367, 754-757.
    • (1994) Nature , vol.367 , pp. 754-757
    • Raumann, B.E.1    Rould, M.A.2    Pabo, C.O.3    Sauer, R.T.4
  • 36
    • 0035861642 scopus 로고    scopus 로고
    • Spatially precise DNA bending is an essential activity of the sox2 transcription factor
    • Scaffidi, P. and Bianchi, M.E. (2001) Spatially precise DNA bending is an essential activity of the sox2 transcription factor. J. Biol. Chem., 276, 47296-47302.
    • (2001) J. Biol. Chem. , vol.276 , pp. 47296-47302
    • Scaffidi, P.1    Bianchi, M.E.2
  • 37
    • 0030903273 scopus 로고    scopus 로고
    • The regulator of early gliogenesis glial cells missing is a transcription factor with a novel type of DNA-binding domain
    • Schreiber, J., Sock, E. and Wegner, M. (1997) The regulator of early gliogenesis glial cells missing is a transcription factor with a novel type of DNA-binding domain. Proc. Natl. Acad. Sci. USA, 94, 4739-4744.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 4739-4744
    • Schreiber, J.1    Sock, E.2    Wegner, M.3
  • 38
    • 0032524715 scopus 로고    scopus 로고
    • Structural requirements for DNA binding of GCM proteins
    • Schreiber, J., Enderich, J. and Wegner, M. (1998) Structural requirements for DNA binding of GCM proteins. Nucleic Acids Res., 26, 2337-2343.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2337-2343
    • Schreiber, J.1    Enderich, J.2    Wegner, M.3
  • 40
    • 0026641755 scopus 로고
    • Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by β-strands
    • Somers, W.S. and Phillips, S.E. (1992) Crystal structure of the met repressor-operator complex at 2.8 Å resolution reveals DNA recognition by β-strands. Nature, 359, 387-393.
    • (1992) Nature , vol.359 , pp. 387-393
    • Somers, W.S.1    Phillips, S.E.2
  • 42
    • 0033896691 scopus 로고    scopus 로고
    • Maximum-likelihood density modification
    • Terwilliger, T.C. (2000) Maximum-likelihood density modification. Acta Crystallogr. D, 56, 965-972.
    • (2000) Acta Crystallogr. D , vol.56 , pp. 965-972
    • Terwilliger, T.C.1
  • 43
    • 0033119895 scopus 로고    scopus 로고
    • Automated MAD and MIR structure solution
    • Terwilliger, T.C. and Berendzen, J. (1999) Automated MAD and MIR structure solution. Acta Crystallogr. D, 55, 849-861.
    • (1999) Acta Crystallogr. D , vol.55 , pp. 849-861
    • Terwilliger, T.C.1    Berendzen, J.2
  • 44
    • 0033529768 scopus 로고    scopus 로고
    • Crystal structure of the α appendage of AP-2 reveals a recruitment platform for clathrin-coat assembly
    • Traub, L.M., Downs, M.A., Westrich, J.L. and Fremont, D.H. (1999) Crystal structure of the α appendage of AP-2 reveals a recruitment platform for clathrin-coat assembly. Proc. Natl Acad. Sci. USA, 96, 8907-8912.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 8907-8912
    • Traub, L.M.1    Downs, M.A.2    Westrich, J.L.3    Fremont, D.H.4
  • 45
    • 0034681323 scopus 로고    scopus 로고
    • Protein stability and domain topology determine the transcriptional activity of the mammalian glial cells missing homolog, GCMb
    • Tuerk, E.E., Schreiber, J. and Wegner, M. (2000) Protein stability and domain topology determine the transcriptional activity of the mammalian glial cells missing homolog, GCMb. J. Biol. Chem., 275, 4774-4782.
    • (2000) J. Biol. Chem. , vol.275 , pp. 4774-4782
    • Tuerk, E.E.1    Schreiber, J.2    Wegner, M.3
  • 46
    • 0036668288 scopus 로고    scopus 로고
    • Glide/gcm: At the crossroads between neurons and glia
    • Van de Bor, V. and Giangrande, A. (2002) Glide/gcm: at the crossroads between neurons and glia. Curr. Opin. Genet. Dev., 12, 465-472.
    • (2002) Curr. Opin. Genet. Dev. , vol.12 , pp. 465-472
    • Van de Bor, V.1    Giangrande, A.2
  • 47
    • 0029671191 scopus 로고    scopus 로고
    • Glide directs glial fate commitment and cell fate switch between neurones and glia
    • Vincent, S., Vonesch, J.L. and Giangrande, A. (1996) Glide directs glial fate commitment and cell fate switch between neurones and glia. Development, 122, 131-139.
    • (1996) Development , vol.122 , pp. 131-139
    • Vincent, S.1    Vonesch, J.L.2    Giangrande, A.3
  • 48
    • 0035339956 scopus 로고    scopus 로고
    • Chronicles of a switch hunt: Gcm genes in development
    • Wegner, M. and Riethmacher, D. (2001) Chronicles of a switch hunt: gcm genes in development. Trends Genet., 17, 286-290.
    • (2001) Trends Genet. , vol.17 , pp. 286-290
    • Wegner, M.1    Riethmacher, D.2
  • 49
    • 0027207579 scopus 로고
    • Regulation of JC virus by the POU-domain transcription factor Tst-1: Implications for progressive multifocal leukoencephalopathy
    • Wegner, M., Drolet, D.W. and Rosenfeld, M.G. (1993) Regulation of JC virus by the POU-domain transcription factor Tst-1: implications for progressive multifocal leukoencephalopathy. Proc. Natl Acad. Sci. USA, 90, 4743-4747.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 4743-4747
    • Wegner, M.1    Drolet, D.W.2    Rosenfeld, M.G.3
  • 50


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.