메뉴 건너뛰기




Volumn 31, Issue 6, 2003, Pages 1704-1714

A revised annotation and comparative analysis of Helicobacter pylori genomes

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; BACTERIAL STRAIN; BASE MISPAIRING; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; GENE CONTROL; GENE SEQUENCE; GENETIC CODE; GENETIC DATABASE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENOME SIZE; HELICOBACTER PYLORI; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PSEUDOGENE; PYLORIGENE DATABASE; REVIEW; SEQUENCE ANALYSIS; START CODON;

EID: 0037443871     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg250     Document Type: Review
Times cited : (68)

References (72)
  • 1
    • 84920247287 scopus 로고
    • Unidentified curved bacilli on gastric epithelium in active chronic gastritis
    • Warren,J.R. and Marshall,B.J. (1983) Unidentified curved bacilli on gastric epithelium in active chronic gastritis. Lancet, i, 1273-1275.
    • (1983) Lancet , vol.1 , pp. 1273-1275
    • Warren, J.R.1    Marshall, B.J.2
  • 2
    • 0021259505 scopus 로고
    • Unidentified curved bacilli in the stomach of patients with gastritis peptic ulceration
    • Marshall,B.J. and Warren,J.R. (1984) Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration. Lancet, 1, 1311-1315.
    • (1984) Lancet , vol.1 , pp. 1311-1315
    • Marshall, B.J.1    Warren, J.R.2
  • 3
    • 0029043658 scopus 로고
    • Infection with Helicobacter pylori strains possessing cagA is associated with an increased risk of developing adenocarcinoma of the stomach
    • Blaser,M.J., Perez-Perez,G.I., Kleanthous,H., Cover,T.L., Peek,R.M., Chyou,P.H., Stemmermann,G.N. and Nomura,A. (1995) Infection with Helicobacter pylori strains possessing cagA is associated with an increased risk of developing adenocarcinoma of the stomach. Cancer Res., 55, 2111-2115.
    • (1995) Cancer Res. , vol.55 , pp. 2111-2115
    • Blaser, M.J.1    Perez-Perez, G.I.2    Kleanthous, H.3    Cover, T.L.4    Peek, R.M.5    Chyou, P.H.6    Stemmermann, G.N.7    Nomura, A.8
  • 7
    • 0034651602 scopus 로고    scopus 로고
    • Vitamins carotenoids dietary fiber the risk of gastric carcinoma: Results from a prospective study after 6.3 years of follow-up
    • Botterweck,A.A., van den Brandt,P.A. and Goldbohm,R.A. (2000) Vitamins, carotenoids, dietary fiber and the risk of gastric carcinoma: results from a prospective study after 6.3 years of follow-up. Cancer, 88, 737-748.
    • (2000) Cancer , vol.88 , pp. 737-748
    • Botterweck, A.A.1    van den Brandt, P.A.2    Goldbohm, R.A.3
  • 10
    • 0034038128 scopus 로고    scopus 로고
    • Genetic variability within Helicobacter pylori
    • Suerbaum,S. (2000) Genetic variability within Helicobacter pylori. Int. J. Med. Microbiol., 290, 175-181.
    • (2000) Int. J. Med. Microbiol. , vol.290 , pp. 175-181
    • Suerbaum, S.1
  • 12
    • 0033391298 scopus 로고    scopus 로고
    • Mutation as an origin of genetic variability in Helicobacter pylori
    • Wang,G., Humayun,M.Z. and Taylor,D.E. (1999) Mutation as an origin of genetic variability in Helicobacter pylori. Trends Microbiol., 7, 488-493.
    • (1999) Trends Microbiol. , vol.7 , pp. 488-493
    • Wang, G.1    Humayun, M.Z.2    Taylor, D.E.3
  • 15
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith,T.F. and Waterman,M.S. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 19
    • 0027224061 scopus 로고
    • Colibri: A functional database for the Escherichia coli genome
    • Médigue,C., Viari,A., Hénaut,A. and Danchin,A. (1993) Colibri: a functional database for the Escherichia coli genome. Microbiological Rev., 57, 623-654.
    • (1993) Microbiological Rev. , vol.57 , pp. 623-654
    • Médigue, C.1    Viari, A.2    Hénaut, A.3    Danchin, A.4
  • 20
    • 0028935455 scopus 로고
    • SubtiList: A relational database for the Bacillus subtilis genome
    • Moszer,I., Glaser,P. and Danchin,A. (1995) SubtiList: a relational database for the Bacillus subtilis genome. Microbiology, 141, 261-268.
    • (1995) Microbiology , vol.141 , pp. 261-268
    • Moszer, I.1    Glaser, P.2    Danchin, A.3
  • 22
    • 0001851807 scopus 로고    scopus 로고
    • Biosynthesis of purine nucleotides
    • Neidhardt,F.C. (ed.) Second edition. ASM Press, Washington DC
    • Zalkin,H. and Nygaard,P. (1996) Biosynthesis of purine nucleotides. In Neidhardt,F.C. (ed.), Escherichia coli and Salmonella. Cellular and Molecular Biology. Second edition. ASM Press, Washington DC, pp. 561-579.
    • (1996) Escherichia Coli Salmonella. Cellular Molecular Biology , pp. 561-579
    • Zalkin, H.1    Nygaard, P.2
  • 23
    • 0000088667 scopus 로고    scopus 로고
    • Nucleotide metabolism
    • Mobley,H.L.T., Mendz,G.L. and Hazell,S.L. (eds), ASM Press, Washington DC
    • Mendz,G.L. (2001) Nucleotide metabolism. In Mobley,H.L.T., Mendz,G.L. and Hazell,S.L. (eds), Helicobacter pylori. Physiology and Genetics. ASM Press, Washington DC, pp. 147-158.
    • (2001) Helicobacter Pylori. Physiology and Genetics , pp. 147-158
    • Mendz, G.L.1
  • 24
    • 0034109116 scopus 로고    scopus 로고
    • Another unusual type of citric acid cycle enzyme in Helicobacter pylori: The malate: Quinone oxidoreductase
    • Kather,B., Stingl,K., van der Rest,M.E., Altendorf,K. and Molenaar,D. (2000) Another unusual type of citric acid cycle enzyme in Helicobacter pylori: the malate:quinone oxidoreductase. J. Bacteriol., 182, 3204-3209.
    • (2000) J. Bacteriol. , vol.182 , pp. 3204-3209
    • Kather, B.1    Stingl, K.2    van der Rest, M.E.3    Altendorf, K.4    Molenaar, D.5
  • 26
    • 0034903021 scopus 로고    scopus 로고
    • Natural transformation competence in Helicobacter pylori is mediated by the basic components of a type IV secretion system
    • Hofreuter,D., Odenbreit,S. and Haas,R. (2001) Natural transformation competence in Helicobacter pylori is mediated by the basic components of a type IV secretion system. Mol. Microbiol., 41, 379-391.
    • (2001) Mol. Microbiol. , vol.41 , pp. 379-391
    • Hofreuter, D.1    Odenbreit, S.2    Haas, R.3
  • 27
    • 0032544054 scopus 로고    scopus 로고
    • A 1-deoxy-D-xylulose 5-phosphate reductoisomerase catalyzing the formation of 2-C-methyl-D-erythritol 4-phosphate in an alternative nonmevalonate pathway for terpenoid biosynthesis
    • Takahashi,S., Kuzuyama,T., Watanabe,H. and Seto,H. (1998) A 1-deoxy-D-xylulose 5-phosphate reductoisomerase catalyzing the formation of 2-C-methyl-D-erythritol 4-phosphate in an alternative nonmevalonate pathway for terpenoid biosynthesis. Proc. Natl Acad. Sci. USA, 95, 9879-9884.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 9879-9884
    • Takahashi, S.1    Kuzuyama, T.2    Watanabe, H.3    Seto, H.4
  • 30
    • 0032693034 scopus 로고    scopus 로고
    • Cytidine 5′-triphosphate-dependent biosynthesis of isoprenoids: YgbP protein of Escherichia coli catalyzes the formation of 4-diphosphocytidyl-2-C-methylerythritol
    • Rohdich,F., Wungsintaweekul,J., Fellermeier,M., Sagner,S., Herz,S., Kis,K., Eisenreich,W., Bacher,A. and Zenk,M.H. (1999) Cytidine 5′-triphosphate-dependent biosynthesis of isoprenoids: YgbP protein of Escherichia coli catalyzes the formation of 4-diphosphocytidyl-2-C-methylerythritol. Proc. Natl Acad. Sci. USA, 96, 11758-11763.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 11758-11763
    • Rohdich, F.1    Wungsintaweekul, J.2    Fellermeier, M.3    Sagner, S.4    Herz, S.5    Kis, K.6    Eisenreich, W.7    Bacher, A.8    Zenk, M.H.9
  • 31
    • 0035088792 scopus 로고    scopus 로고
    • GcpE is involved in the 2-C-methyl-D-erythritol 4-phosphate pathway of isoprenoid biosynthesis in Escherichia coli
    • Altincicek,B., Kollas,A.K., Sanderbrand,S., Wiesner,J., Hintz,M., Beck,E. and Jomaa,H. (2001) GcpE is involved in the 2-C-methyl-D-erythritol 4-phosphate pathway of isoprenoid biosynthesis in Escherichia coli. J. Bacteriol., 183, 2411-2416.
    • (2001) J. Bacteriol. , vol.183 , pp. 2411-2416
    • Altincicek, B.1    Kollas, A.K.2    Sanderbrand, S.3    Wiesner, J.4    Hintz, M.5    Beck, E.6    Jomaa, H.7
  • 32
    • 0035876043 scopus 로고    scopus 로고
    • LytB a novel gene of the 2-C-methyl-D-erythritol 4-phosphate pathway of isoprenoid biosynthesis in Escherichia coli
    • Altincicek,B., Kollas,A., Eberl,M., Wiesner,J., Sanderbrand,S., Hintz,M., Beck,E. and Jomaa,H. (2001) LytB, a novel gene of the 2-C-methyl-D-erythritol 4-phosphate pathway of isoprenoid biosynthesis in Escherichia coli. FEBS Lett., 499, 37-40.
    • (2001) FEBS Lett. , vol.499 , pp. 37-40
    • Altincicek, B.1    Kollas, A.2    Eberl, M.3    Wiesner, J.4    Sanderbrand, S.5    Hintz, M.6    Beck, E.7    Jomaa, H.8
  • 33
    • 0033813444 scopus 로고    scopus 로고
    • Evidence of a role for LytB in the nonmevalonate pathway of isoprenoid biosynthesis
    • Cunningham,F.X.,Jr, Lafond,T.P. and Gantt,E. (2000) Evidence of a role for LytB in the nonmevalonate pathway of isoprenoid biosynthesis. J. Bacteriol., 182, 5841-5848.
    • (2000) J. Bacteriol. , vol.182 , pp. 5841-5848
    • Cunningham F.X., Jr.1    Lafond, T.P.2    Gantt, E.3
  • 36
    • 0000605871 scopus 로고    scopus 로고
    • Biosynthesis of the aromatic amino acids
    • Neidhardt,F.C. (ed.) Second Edition. ASM Press, Washington DC
    • Pittard,A.J. (1996) Biosynthesis of the aromatic amino acids. In Neidhardt,F.C. (ed.), Escherichia coli and Salmonella. Cellular and Molecular Biology. Second Edition. ASM Press, Washington DC, pp. 458-484.
    • (1996) Escherichia Coli Salmonella. Cellular Molecular Biology , pp. 458-484
    • Pittard, A.J.1
  • 37
    • 0012383427 scopus 로고
    • Autocatalytic growth of a mutant due to accumulation of an unstable phenylalanine precursor
    • Davis,B.D. (1953) Autocatalytic growth of a mutant due to accumulation of an unstable phenylalanine precursor. Science, 118, 251-252.
    • (1953) Science , vol.118 , pp. 251-252
    • Davis, B.D.1
  • 38
    • 0012378254 scopus 로고
    • Accumulation of phenylalanine by a phenylalanineless mutant of Escherichia coli
    • Katagiri,M. and Sato,R. (1953) Accumulation of phenylalanine by a phenylalanineless mutant of Escherichia coli. Science, 118, 250-251.
    • (1953) Science , vol.118 , pp. 250-251
    • Katagiri, M.1    Sato, R.2
  • 39
    • 0012460977 scopus 로고
    • The metabolism of phenylalalnine tyrosine in mutant strains of Escherichia coli
    • Simmonds,S. (1950) The metabolism of phenylalalnine and tyrosine in mutant strains of Escherichia coli. J. Biol. Chem., 185, 755-762.
    • (1950) J. Biol. Chem. , vol.185 , pp. 755-762
    • Simmonds, S.1
  • 40
    • 0028046168 scopus 로고
    • Characteristics of Helicobacter pylori growth in a defined medium determination of its amino acid requirements
    • Reynolds,D.J. and Penn,C.W. (1994) Characteristics of Helicobacter pylori growth in a defined medium and determination of its amino acid requirements. Microbiology, 140, 2649-2656.
    • (1994) Microbiology , vol.140 , pp. 2649-2656
    • Reynolds, D.J.1    Penn, C.W.2
  • 41
    • 0028832828 scopus 로고
    • Aminoacid utilization by Helicobacter pylori
    • Mendz,G.L. and Hazell,S.L. (1995) Aminoacid utilization by Helicobacter pylori. Int. J. Biochem. Cell Biol., 27, 1085-1093.
    • (1995) Int. J. Biochem. Cell Biol. , vol.27 , pp. 1085-1093
    • Mendz, G.L.1    Hazell, S.L.2
  • 42
    • 0030795361 scopus 로고    scopus 로고
    • The Haemophilus influenzae dprABC genes constitute a competence-inducible operon that requires the product of the tfoX (sxy) gene for transcriptional activation
    • Karudapuram,S. and Barcak,G.J. (1997) The Haemophilus influenzae dprABC genes constitute a competence-inducible operon that requires the product of the tfoX (sxy) gene for transcriptional activation. J. Bacteriol., 179, 4815-4820.
    • (1997) J. Bacteriol. , vol.179 , pp. 4815-4820
    • Karudapuram, S.1    Barcak, G.J.2
  • 44
    • 0032882587 scopus 로고    scopus 로고
    • HP0333 a member of the dprA family is involved in natural transformation in Helicobacter pylori
    • Ando,T., Israel,D.A., Kusugami,K. and Blaser,M.J. (1999) HP0333, a member of the dprA family, is involved in natural transformation in Helicobacter pylori. J. Bacteriol., 181, 5572-5580.
    • (1999) J. Bacteriol. , vol.181 , pp. 5572-5580
    • Ando, T.1    Israel, D.A.2    Kusugami, K.3    Blaser, M.J.4
  • 46
    • 0035140053 scopus 로고    scopus 로고
    • Allelic variation within Helicobacter pylori babA babB
    • Pride,D.T., Meinersmann,R.J. and Blaser,M.J. (2001) Allelic variation within Helicobacter pylori babA and babB. Infect. Immun., 69, 1160-1171.
    • (2001) Infect. Immun. , vol.69 , pp. 1160-1171
    • Pride, D.T.1    Meinersmann, R.J.2    Blaser, M.J.3
  • 47
    • 0035956977 scopus 로고    scopus 로고
    • Comparative genomics of the restriction-modification systems in Helicobacter pylori
    • Lin,L.F., Posfai,J., Roberts,R.J. and Kong,H. (2001) Comparative genomics of the restriction-modification systems in Helicobacter pylori. Proc. Natl Acad. Sci. USA, 98, 2740-2745.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 2740-2745
    • Lin, L.F.1    Posfai, J.2    Roberts, R.J.3    Kong, H.4
  • 49
    • 0033918170 scopus 로고    scopus 로고
    • Comparative genomics of Helicobacter pylori: Analysis of the outer membrane protein families
    • Alm,R.A., Bina,J., Andrews,B.M., Doig,P., Hancock,R.E. and Trust,T.J. (2000) Comparative genomics of Helicobacter pylori: analysis of the outer membrane protein families. Infect. Immun., 68, 4155-4168.
    • (2000) Infect. Immun. , vol.68 , pp. 4155-4168
    • Alm, R.A.1    Bina, J.2    Andrews, B.M.3    Doig, P.4    Hancock, R.E.5    Trust, T.J.6
  • 52
    • 0029059733 scopus 로고
    • Mosaicism in vacuolating cytotoxin alleles of Helicobacter pylori. Association of specific vacA types with cytotoxin production peptic ulceration
    • Atherton,J.C., Cao,P., Peek,R.M.,Jr, Tummuru,M.K., Blaser,M.J. and Cover,T.L. (1995) Mosaicism in vacuolating cytotoxin alleles of Helicobacter pylori. Association of specific vacA types with cytotoxin production and peptic ulceration. J. Biol. Chem., 270, 17771-17777.
    • (1995) J. Biol. Chem. , vol.270 , pp. 17771-17777
    • Atherton, J.C.1    Cao, P.2    Peek R.M., Jr.3    Tummuru, M.K.4    Blaser, M.J.5    Cover, T.L.6
  • 53
    • 0033380294 scopus 로고    scopus 로고
    • Analysis of the genetic diversity of Helicobacter pylori: The tale of two genomes
    • Alm,R.A. and Trust,T.J. (1999) Analysis of the genetic diversity of Helicobacter pylori: the tale of two genomes. J. Mol. Med., 77, 834-846.
    • (1999) J. Mol. Med. , vol.77 , pp. 834-846
    • Alm, R.A.1    Trust, T.J.2
  • 54
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database its supplement TrEMBL in 2000
    • Bairoch,A. and Apweiler,R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 57
    • 0036169909 scopus 로고    scopus 로고
    • Functional characterization of the antagonistic flagellar late regulators FliA FlgM of Helicobacter pylori their effects on the H. pylori transcriptome
    • Josenhans,C., Niehus,E., Amersbach,S., Horster,A., Betz,C., Drescher,B., Hughes,K.T. and Suerbaum,S. (2002) Functional characterization of the antagonistic flagellar late regulators FliA and FlgM of Helicobacter pylori and their effects on the H. pylori transcriptome. Mol. Microbiol., 43, 307-322.
    • (2002) Mol. Microbiol. , vol.43 , pp. 307-322
    • Josenhans, C.1    Niehus, E.2    Amersbach, S.3    Horster, A.4    Betz, C.5    Drescher, B.6    Hughes, K.T.7    Suerbaum, S.8
  • 59
    • 0030926773 scopus 로고    scopus 로고
    • Regulation of substrate recognition by the MiaA tRNA prenyltransferase modification enzyme of Escherichia coli K-12
    • Leung,H.C., Chen,Y. and Winkler,M.E. (1997) Regulation of substrate recognition by the MiaA tRNA prenyltransferase modification enzyme of Escherichia coli K-12. J. Biol. Chem., 272, 13073-13083.
    • (1997) J. Biol. Chem. , vol.272 , pp. 13073-13083
    • Leung, H.C.1    Chen, Y.2    Winkler, M.E.3
  • 61
    • 0035849678 scopus 로고    scopus 로고
    • The LlaGI restriction modification system of Lactococcus lactis W10 consists of only one single polypeptide
    • Madsen,A. and Josephsen,J. (2001) The LlaGI restriction and modification system of Lactococcus lactis W10 consists of only one single polypeptide. FEMS Microbiol. Lett., 200, 91-96.
    • (2001) FEMS Microbiol. Lett. , vol.200 , pp. 91-96
    • Madsen, A.1    Josephsen, J.2
  • 62
    • 0035847117 scopus 로고    scopus 로고
    • Cloning expression some properties of alpha-carbonic anhydrase from Helicobacter pylori
    • 1544
    • Chirica,L.C., Elleby,B. and Lindskog,S. (2001) Cloning, expression and some properties of alpha-carbonic anhydrase from Helicobacter pylori. Biochim. Biophys. Acta, 1544, 55-63.
    • (2001) Biochim. Biophys. Acta , pp. 55-63
    • Chirica, L.C.1    Elleby, B.2    Lindskog, S.3
  • 63
    • 0035504408 scopus 로고    scopus 로고
    • Strain-specific genes of Helicobacter pylori: Distribution function dynamics
    • Janssen,P.J., Audit,B. and Ouzounis,C.A. (2001) Strain-specific genes of Helicobacter pylori: distribution, function and dynamics. Nucleic Acids Res., 29, 4395-4404.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 4395-4404
    • Janssen, P.J.1    Audit, B.2    Ouzounis, C.A.3
  • 65
    • 0032944936 scopus 로고    scopus 로고
    • Emergence of recombinant strains of Helicobacter pylori during human infection
    • Kersulyte,D., Chalkauskas,H. and Berg,D.E. (1999) Emergence of recombinant strains of Helicobacter pylori during human infection. Mol. Microbiol., 31, 31-43.
    • (1999) Mol. Microbiol. , vol.31 , pp. 31-43
    • Kersulyte, D.1    Chalkauskas, H.2    Berg, D.E.3
  • 66
    • 0002249918 scopus 로고    scopus 로고
    • Use of DNA chips to study the biodiversity of H. pylori clinical isolates from different geographical origins
    • Thiberge,J.-M. and Labigne,A. (2000) Use of DNA chips to study the biodiversity of H. pylori clinical isolates from different geographical origins. Gut, 47 (Suppl. 1), A1.
    • (2000) Gut , vol.47 , Issue.SUPPL. 1
    • Thiberge, J.-M.1    Labigne, A.2
  • 68
    • 0037008715 scopus 로고    scopus 로고
    • Identification of surface-exposed proteins of Helicobacter pylori by selective biotinylation affinity purification two-dimensional gel electrophoresis
    • Sabarth,N., Lamer,S., Zimny-Arndt,U., Jungblut,P.R., Meyer,T.F. and Bumann,D. (2002) Identification of surface-exposed proteins of Helicobacter pylori by selective biotinylation, affinity purification and two-dimensional gel electrophoresis. J. Biol. Chem., 277, 27896-27902.
    • (2002) J. Biol. Chem. , vol.277 , pp. 27896-27902
    • Sabarth, N.1    Lamer, S.2    Zimny-Arndt, U.3    Jungblut, P.R.4    Meyer, T.F.5    Bumann, D.6
  • 72
    • 0035319960 scopus 로고    scopus 로고
    • Proteome analysis of the common human pathogen Helicobacter pylori
    • Bumann,D., Meyer,T.F. and Jungblut,P.R. (2001) Proteome analysis of the common human pathogen Helicobacter pylori. Proteomics, 1, 473-479.
    • (2001) Proteomics , vol.1 , pp. 473-479
    • Bumann, D.1    Meyer, T.F.2    Jungblut, P.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.