-
2
-
-
0033031437
-
DNA arrays for analysis of gene expression
-
Eisen MB, Brown PO. DNA arrays for analysis of gene expression. Methods in Enzymology 1999; 303:179-205.
-
(1999)
Methods in Enzymology
, vol.303
, pp. 179-205
-
-
Eisen, M.B.1
Brown, P.O.2
-
4
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
(5439)
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, Bloomfield CD, Lander ES. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 1999; 286 (5439):531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
5
-
-
0035931947
-
Gene-expression profiles in hereditary breast cancer
-
Hedenfalk I, Duggan D, Chen Y, Radmacher M, Bittner M, Simon R, Meltzer P, Gusterson B, Esteller M, Raffeld M, Yakhini Z, Ben-Dor A, Dougherty E, Kononen J, Bubendorf L, Fehrle W, Pittaluga S, Gruvberger S, Loman N, Johannsson O, Olsson H, Wilfond B, Sauter G, Kallioniemi OP, Borg A, Trent J. Gene-expression profiles in hereditary breast cancer. New England Journal of Medicine 2001; 344(8):539-548.
-
(2001)
New England Journal of Medicine
, vol.344
, Issue.8
, pp. 539-548
-
-
Hedenfalk, I.1
Duggan, D.2
Chen, Y.3
Radmacher, M.4
Bittner, M.5
Simon, R.6
Meltzer, P.7
Gusterson, B.8
Esteller, M.9
Raffeld, M.10
Yakhini, Z.11
Ben-Dor, A.12
Dougherty, E.13
Kononen, J.14
Bubendorf, L.15
Fehrle, W.16
Pittaluga, S.17
Gruvberger, S.18
Loman, N.19
Johannsson, O.20
Olsson, H.21
Wilfond, B.22
Sauter, G.23
Kallioniemi, O.P.24
Borg, A.25
Trent, J.26
more..
-
6
-
-
13044304179
-
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers
-
Perou CM, Jeffrey SS, van de Rijn M, Rees CA, Eisen MB, Ross DT, Pergamenschikov A, Williams CF, Zhu SX, Lee JC, Lashkari D, Shalon D, Brown PO, Botstein D. Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proceedinys of the National Academy of Science 1999; 96(16):9212-9217.
-
(1999)
Proceedinys of the National Academy of Science
, vol.96
, Issue.16
, pp. 9212-9217
-
-
Perou, C.M.1
Jeffrey, S.S.2
van de Rijn, M.3
Rees, C.A.4
Eisen, M.B.5
Ross, D.T.6
Pergamenschikov, A.7
Williams, C.F.8
Zhu, S.X.9
Lee, J.C.10
Lashkari, D.11
Shalon, D.12
Brown, P.O.13
Botstein, D.14
-
7
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
(6769)
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X, Powell JI, Yang L, Marti GE, Moore T, Hudson J Jr, Lu L, Lewis DB, Tibshirani R, Sherlock G, Chan WC, Greiner TC, Weisenburger DD, Armitage JO, Warnke R, Levy R, Wilson W, Grever MR, Byrd JC, Botstein D, Brown PO, Staudt LM. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 2000; 403(6769):503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Marti, G.E.13
Moore, T.14
Hudson J., Jr.15
Lu, L.16
Lewis, D.B.17
Tibshirani, R.18
Sherlock, G.19
Chan, W.C.20
Greiner, T.C.21
Weisenburger, D.D.22
Armitage, J.O.23
Warnke, R.24
Levy, R.25
Wilson, W.26
Grever, M.R.27
Byrd, J.C.28
Botstein, D.29
Brown, P.O.30
Staudt, L.M.31
more..
-
8
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
(6795)
-
Bittner M, Meltzer P, Chen Y, Jiang Y, Seftor E, Hendrix M, Radmacher M, Simon R, Yakhini Z, Ben-Dor A, Sampas N, Dougherty E, Wang E, Marincola F, Gooden C, Lueders J, Glatfelter A, Pollock P, Carpten J, Gillanders E, Leja D, Dietrich K, Beaudry C, Berens M, Alberts D, Sondak V, Hayward N, Trent J. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 2000; 406(6795):536-540.
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
Chen, Y.3
Jiang, Y.4
Seftor, E.5
Hendrix, M.6
Radmacher, M.7
Simon, R.8
Yakhini, Z.9
Ben-Dor, A.10
Sampas, N.11
Dougherty, E.12
Wang, E.13
Marincola, F.14
Gooden, C.15
Lueders, J.16
Glatfelter, A.17
Pollock, P.18
Carpten, J.19
Gillanders, E.20
Leja, D.21
Dietrich, K.22
Beaudry, C.23
Berens, M.24
Alberts, D.25
Sondak, V.26
Hayward, N.27
Trent, J.28
more..
-
9
-
-
0034601487
-
Genomic analysis of metastasis reveals an essential role for RhoC
-
(6795)
-
Clark EA, Golub TR, Lander ES, Hynes RO. Genomic analysis of metastasis reveals an essential role for RhoC. Nature 2000; 406(6795):532-535.
-
(2000)
Nature
, vol.406
, pp. 532-535
-
-
Clark, E.A.1
Golub, T.R.2
Lander, E.S.3
Hynes, R.O.4
-
10
-
-
0034724389
-
Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signaling, and adhesion
-
Coller HA, Grandori C, Tamayo P, Colbert T, Lander ES, Eisenman RN, Golub TR. Expression analysis with oligonucleotide microarrays reveals that MYC regulates genes involved in growth, cell cycle, signaling, and adhesion. Proceedings of the National Academy of Science 2000; 97(7):3260-3265.
-
(2000)
Proceedings of the National Academy of Science
, vol.97
, Issue.7
, pp. 3260-3265
-
-
Coller, H.A.1
Grandori, C.2
Tamayo, P.3
Colbert, T.4
Lander, E.S.5
Eisenman, R.N.6
Golub, T.R.7
-
11
-
-
0035970050
-
Analysis of gene expression profiles in normal and neoplastic ovarian tissue samples identifies candidate molecular markers of epithelial ovarian cancer
-
Welsh JB, Zarrinkar PP, Sapinoso LM, Kern SG, Behling CA, Monk BJ, Lockhart DJ, Burger RA, Hampton GM. Analysis of gene expression profiles in normal and neoplastic ovarian tissue samples identifies candidate molecular markers of epithelial ovarian cancer. Proceedings of the National Academy of Sciences 2001; 98(3):1176-1181.
-
(2001)
Proceedings of the National Academy of Sciences
, vol.98
, Issue.3
, pp. 1176-1181
-
-
Welsh, J.B.1
Zarrinkar, P.P.2
Sapinoso, L.M.3
Kern, S.G.4
Behling, C.A.5
Monk, B.J.6
Lockhart, D.J.7
Burger, R.A.8
Hampton, G.M.9
-
12
-
-
0035874995
-
Human prostate cancer and benign prostatic hyperplasia: Molecular dissection by gene expression profiling
-
Luo J, Duggan DJ, Chen Y, Sauvageot J, Ewing CM, Bittner ML, Trent JM, Isaacs WB. Human prostate cancer and benign prostatic hyperplasia: molecular dissection by gene expression profiling. Cancer Research 2001; 61(12):4683-4688.
-
(2001)
Cancer Research
, vol.61
, Issue.12
, pp. 4683-4688
-
-
Luo, J.1
Duggan, D.J.2
Chen, Y.3
Sauvageot, J.4
Ewing, C.M.5
Bittner, M.L.6
Trent, J.M.7
Isaacs, W.B.8
-
13
-
-
0000847978
-
Gene-expression profile of the ageing brain in mice
-
Lee C-K, Weindruch R, Prolla TA. Gene-expression profile of the ageing brain in mice. Nature Genetics 2000; 25(3):294-297.
-
(2000)
Nature Genetics
, vol.25
, Issue.3
, pp. 294-297
-
-
Lee, C.-K.1
Weindruch, R.2
Prolla, T.A.3
-
14
-
-
0034633681
-
The expression of adipogenic genes is decreased in obesity and diabetes mellitus
-
Nadler ST, Stoehr JP, Schueler KP, Tanimoto G, Yandell BS, Attie AD. The expression of adipogenic genes is decreased in obesity and diabetes mellitus. Proceedituls of the National Academy of Sciences 2000; 97(21):11371-11376.
-
(2000)
Proceedituls of the National Academy of Sciences
, vol.97
, Issue.21
, pp. 11371-11376
-
-
Nadler, S.T.1
Stoehr, J.P.2
Schueler, K.P.3
Tanimoto, G.4
Yandell, B.S.5
Attie, A.D.6
-
15
-
-
0036180488
-
In vivo regulation of human skeletal muscle gene expression by thyroid hormone
-
Clement K, Viguerie N, Diehn M, Alizadeh A, Barbe P, Thalamas C, Storey JD, Brown PO, Barsh GS, Langin D. In vivo regulation of human skeletal muscle gene expression by thyroid hormone. Genome Research 2002; 12(2):281-291.
-
(2002)
Genome Research
, vol.12
, Issue.2
, pp. 281-291
-
-
Clement, K.1
Viguerie, N.2
Diehn, M.3
Alizadeh, A.4
Barbe, P.5
Thalamas, C.6
Storey, J.D.7
Brown, P.O.8
Barsh, G.S.9
Langin, D.10
-
16
-
-
0035816183
-
Use of cDNA microarrays to analyze dioxin-induced changes in human liver gene expression
-
Frueh FW, Hayashibara KC, Brown PO, Whitlock JP Jr. Use of cDNA microarrays to analyze dioxin-induced changes in human liver gene expression. Toxicology Letters 2001; 122(3):189-203.
-
(2001)
Toxicology Letters
, vol.122
, Issue.3
, pp. 189-203
-
-
Frueh, F.W.1
Hayashibara, K.C.2
Brown, P.O.3
Whitlock J.P., Jr.4
-
17
-
-
0035966008
-
Three cell wall mannoproteins facilitate the uptake of iron in Saccharomyces cerevisiae
-
Protchenko O, Ferea T, Rashford J, Tiedeman J, Brown PO, Botstein D, Philpott CC. Three cell wall mannoproteins facilitate the uptake of iron in Saccharomyces cerevisiae. Journal of Biological Chemistry, 2001; 276(52):49244-49250.
-
(2001)
Journal of Biological Chemistry
, vol.276
, Issue.52
, pp. 49244-49250
-
-
Protchenko, O.1
Ferea, T.2
Rashford, J.3
Tiedeman, J.4
Brown, P.O.5
Botstein, D.6
Philpott, C.C.7
-
20
-
-
0003812858
-
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
-
Technical report 578. 2000, Department of Statistics, University of California, March
-
Dudoit S, Yang YH, Callow MJ, Speed TP. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Technical report 578. 2000, Department of Statistics, University of California, March 2002
-
(2002)
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.J.3
Speed, T.P.4
-
21
-
-
0004156776
-
Resampling-based multiple testiny
-
Wiley: New York
-
Westfall PH, Young SS. Resampling-based multiple testiny. Wiley: New York, 1993.
-
(1993)
-
-
Westfall, P.H.1
Young, S.S.2
-
23
-
-
0003610576
-
-
SAS Institute: North Carolina
-
Westfall PH, Tobias RD, Rom D, Wolfinger RD, Hochberg Y. Multiple Comparisons and Multiple Tests using the SAS System. SAS Institute: North Carolina, 1999.
-
(1999)
Multiple Comparisons and Multiple Tests Using the SAS System
-
-
Westfall, P.H.1
Tobias, R.D.2
Rom, D.3
Wolfinger, R.D.4
Hochberg, Y.5
-
24
-
-
0000884487
-
Experimental design for gene expression microarrays
-
Kerr MK, Churchill GA. Experimental design for gene expression microarrays. Biostatistics 2001; 2(2):183-201.
-
(2001)
Biostatistics
, vol.2
, Issue.2
, pp. 183-201
-
-
Kerr, M.K.1
Churchill, G.A.2
-
25
-
-
0035032570
-
Statistical design and the analysis of gene expression microarrays
-
Kerr MK, Churchill GA. Statistical design and the analysis of gene expression microarrays. Genetical Research 2001; 77(2):123-128.
-
(2001)
Genetical Research
, vol.77
, Issue.2
, pp. 123-128
-
-
Kerr, M.K.1
Churchill, G.A.2
-
26
-
-
0006075718
-
How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach
-
Technical report 2001-012, Division of Biostatistics, University of Minnesota, March
-
Pan W, Lin J, Le C. How many replicates of arrays are required to detect gene expression changes in microarray experiments? A mixture model approach. Technical report 2001-012, Division of Biostatistics, University of Minnesota, March 2002 (http://www.biostat.umn.edu/weip/paperSubj.html).
-
(2002)
-
-
Pan, W.1
Lin, J.2
Le, C.3
-
27
-
-
0036012367
-
Statistical analysis of a gene expression microarray experiment with replication
-
Kerr MK, Afshari CA, Bennett L, Bushel P, Martinez J, Walker NJ, Churchill GA. Statistical analysis of a gene expression microarray experiment with replication. Statistica Sinica 2002;12:203-218.
-
(2002)
Statistica Sinica
, vol.12
, pp. 203-218
-
-
Kerr, M.K.1
Afshari, C.A.2
Bennett, L.3
Bushel, P.4
Martinez, J.5
Walker, N.J.6
Churchill, G.A.7
-
28
-
-
0031246430
-
Ratio-based decisions and the quantitative analysis of cDNA microarray images
-
Chen Y, Dougherty ER, Bittner ML. Ratio-based decisions and the quantitative analysis of cDNA microarray images. Journal of Biomedical Optics 1997; 2:364-374.
-
(1997)
Journal of Biomedical Optics
, vol.2
, pp. 364-374
-
-
Chen, Y.1
Dougherty, E.R.2
Bittner, M.L.3
-
29
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
-
Newton MA, Kendziorski CM, Richmond CS, Blattner FR, Tsui KW. On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. Journal of Computational Biology 2001; 8(1):37-52.
-
(2001)
Journal of Computational Biology
, vol.8
, Issue.1
, pp. 37-52
-
-
Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
Blattner, F.R.4
Tsui, K.W.5
-
30
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li C, Wong WH. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proceedings of the National Academy of Sciences 2001; 98(1):31-36.
-
(2001)
Proceedings of the National Academy of Sciences
, vol.98
, Issue.1
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
31
-
-
0003812861
-
Microarrays and their use in a comparative experiment
-
Technical report 213. 2000, Department of Statistics, Stanford University, March
-
Efron B, Tibshirani R, Goss V, Chu G. Microarrays and their use in a comparative experiment. Technical report 213. 2000, Department of Statistics, Stanford University, March 2002 (http://www-stat.stanford.edu/tibs/research.html).
-
(2002)
-
-
Efron, B.1
Tibshirani, R.2
Goss, V.3
Chu, G.4
-
32
-
-
0003758190
-
Estimating the posterior probability of differential gene expression from microarray data
-
Statistical Genetics Group, The Jackson Laboratory
-
Sapir M, Churchill GA. Estimating the posterior probability of differential gene expression from microarray data. Statistical Genetics Group, The Jackson Laboratory, 2001 (htt://www.jax.org/research/churchill).
-
(2001)
-
-
Sapir, M.1
Churchill, G.A.2
-
33
-
-
0033214149
-
Genome-wide expression profiling in Escherchia coli K-12
-
Richmond CS, Glasner JD, Mau R, Jin H, Blattner FR. Genome-wide expression profiling in Escherchia coli K-12. Nucleic Acids Research 1999; 27(19):3821-3835.
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.19
, pp. 3821-3835
-
-
Richmond, C.S.1
Glasner, J.D.2
Mau, R.3
Jin, H.4
Blattner, F.R.5
-
35
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. proceedings of the National Academy of Sciences 1998; 95(25): 14863-14868.
-
(1998)
Proceedings of the National Academy of Sciences
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
36
-
-
0006048396
-
A mixture model approach to detecting differentially expressed genes with microarray data
-
Technical report 2001-011, Division of Biostatistics, University of Minnesotta, March
-
Pan W, Lin J, Le C. A mixture model approach to detecting differentially expressed genes with microarray data. Technical report 2001-011, Division of Biostatistics, University of Minnesotta, March 2002 (http://www.biostat.umn.edu/weip/paperSubj.html).
-
(2002)
-
-
Pan, W.1
Lin, J.2
Le, C.3
-
37
-
-
0003625199
-
Microarrays, empirical Bayes methods, and false discovery rates
-
Technical report 217. 2001, Department of Statistics, Stanford University, March
-
Efron B, Storey JD, Tibshirani R. Microarrays, empirical Bayes methods, and false discovery rates. Technical report 217. 2001, Department of Statistics, Stanford University, March 2002 (http://www-stat.stanford.edu/tibs/research.html).
-
(2002)
-
-
Efron, B.1
Storey, J.D.2
Tibshirani, R.3
-
38
-
-
0036489046
-
Comparison of discrimination methods for the classification of tumors using gene expression data
-
Dudoit S, Fridlyand J, Speed TP. Comparison of discrimination methods for the classification of tumors using gene expression data. Journal of the American Statistical Association 2002; 97(457):77-87.
-
(2002)
Journal of the American Statistical Association
, vol.97
, Issue.457
, pp. 77-87
-
-
Dudoit, S.1
Fridlyand, J.2
Speed, T.P.3
|