Evolution of vertebrate voltage-gated ion channel α chains by sequential gene duplication

Journal of Molecular Evolution

Volumn 56, Issue 3, 2003, Pages 277-285

  Piontkivska, Helen ^a   Hughes, Austin L ^b  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF SOUTH CAROLINA   (United States)

Author keywords

Calcium channels; Genome duplication; Nervous system evolution; Phylogeny; Sodium channels; Voltage gated ion channels

Indexed keywords

CALCIUM CHANNEL; GENE PRODUCT; ION CHANNEL; SODIUM CHANNEL;

ARTICLE; GENE DUPLICATION; GENE EXPRESSION; MOLECULAR EVOLUTION; NERVOUS SYSTEM; NONHUMAN; PHYLOGENY; POLYPLOIDY; VERTEBRATE;

ANIMALS; CATTLE; CRICETINAE; DOGS; EVOLUTION, MOLECULAR; GENE DUPLICATION; GUINEA PIGS; HUMANS; ION CHANNELS; MICE; PHYLOGENY; RABBITS; RATS;

VERTEBRATA;

EID: 0037373236     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-002-2399-9     Document Type: Article

References (37)

1. Aidley DJ, Stanfield PR (1996) Ion channels: Molecules in action. Cambridge University Press, Cambridge, New York
2. Anderson PA, Greenberg RM (2001) Phylogeny of ion channels: Clues to structure and function. Comp Biochem Physiol B Biochem Mol Biol 129:17-28
3. Conley EC, Brammar WJ (1999) The ion channel facts book IV: Voltage-gated channels. Academic Press, San Diego
4. Ertel EA, Campbell KP, Harpold MM, Hofmann F, Mori Y, Perez-Reyes E, Schwartz A, Snutch TP, Tanabe T, Birnbaumer L, Tsien RW, Catterall WA (2000) Nomenclature of voltage-gated calcium channels. Neuron 25:533-535
5. Friedman R, Hughes AL (2001) Pattern and timing of gene duplication in animal genomes. Genome Res 11:1842-1847
6. Goldin AL (2001) Resurgence of sodium channel research. Annu Rev Physiol 63:871-894
7. Hughes AL (1994) The evolution of functionally novel proteins after gene duplication. Proc R Soc Lond B 256:119-124
8. Hughes AL (1998) Phylogenetic tests of the hypothesis of block duplication of homologous genes on human chromosomes 6, 9, and 1. Mol Biol Evol 15:854-870
9. Hughes AL (1999a) Adaptive evolution of genes and genomes. Oxford University Press, New York
10. Hughes AL (1999b) Phylogenies of developmentally important proteins do not support the hypothesis of two rounds of genome duplication early in vertebrate history. J Mol Evol 48:565-576
11. Hughes AL (1999c) Concerted evolution of exons and introns in the MHC-linked tenascin-X gene of mammals. Mol Biol Evol 16:1558-1567
12. Hughes AL (2001) Evolution of the integrin α and β protein families. J Mol Evol 52:63-72
13. Hughes AL, Nei M (1989) Evolution of the major histocompatibility complex: Independent origin of nonclassical class I genes in different groups of mammals. Mol Biol Evol 6:559-579
14. Hughes AL, da Silva J, Friedman R (2001) Ancient genome duplications did not structure the human Hox-bearing chromosomes. Genome Res 11:771-780
15. International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921
16. Isom LL, De Jongh KS, Catterall WA (1994) Auxiliary subunits of voltage-gated ion channels. Neuron 12:1183-1194
17. Isom LL, Ragsdale DS, De Jongh KS, Westenbroek RE, Reber BF, Scheuer T, Catterall WA (1995) Structure and function of the beta 2 subunit of brain sodium channels, a transmembrane glycoprotein with a CAM motif. Cell 83:433-442
18. Jan LY, Jan YN (1990) A superfamily of ion channels. Nature 345:672
19. Jollie M (1977) The origin of the vertebrate brain. Ann NY Acad Sci 299:74-86
20. Kasahara M (1999) The chromosomal duplication model of the major histocompatibility complex. Immunol Rev 167:17-32
21. Kumar S, Hedges SB (1998) A molecular timescale for vertebrate evolution. Nature 392:917-919
22. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17:1244-1245
23. Lopreato GF, Lu Y, Southwell A, Atkinson NS, Hillis DM, Wilcox TP, Zakon HA (2001) Evolution and divergence of sodium channel genes in vertebrates. Proc Natl Acad Sci USA 98:7588-7592
24. Lundin LG (1993) Evolution of the vertebrate genome as reflected in paralogous chromosome regions in man and the house mouse. Genomics 16:1-19
25. Meyer A, Schartl M (1999) Gene and genome duplication in vertebrates: The one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr Opin Cell Biol 11:699-704
26. Nei M, Kumar S (2000) Molecular evolution and phylogenetics. Oxford University Press, New York
27. H gene family. Mol Biol Evol 11:469-482
28. Plummer NW, Meisler MH (1999) Evolution and diversity of mammalian sodium channel genes. Genomics 57:323-331
29. Saitou M, Nei M (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
30. Sidow A (1996) Gen(om)e duplications in the evolution of early vertebrates. Curr Opin Genet Dev 6:715-722
31. Sitnikova T, Nei M (1998) Evolution of immunoglobulin kappa chain variable region genes in vertebrates. Mol Biol Evol 15:50-60
32. Su C, Nei M (2001) Evolutionary dynamics of the T-cell receptor VB gene family as inferred from the human and mouse genomic sequences. Mol Biol Evol 18:503-513
33. Strimmer K, von Haeseler A (1996) Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies. Mol Biol Evol 13:964-969
34. Strong M, Chandy KG, Gutman GA (1993) Molecular evolution of voltage-sensitive ion channel genes: On the origins of electrical excitability. Mol Biol Evol 10:221-242
35. Swofford DL (2000) PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer Associates, Sunderland, MA
36. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
37. Zhang J, Nei M (1996) Evolution of the Antennapedia-class homeobox genes. Genetics 142:295-303