Evolution of antennapedia-class homeobox genes

Genetics

Volumn 142, Issue 1, 1996, Pages 295-303

  Zhang, Jianzhi ^a   Nei, Masatoshi ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANIMAL EMBRYO; ARTICLE; CHROMOSOME; EVOLUTION; GENE DUPLICATION; GENE EXPRESSION; GENE REARRANGEMENT; HOMEOBOX; MULTIGENE FAMILY; PHYLOGENY; PRIORITY JOURNAL; TANDEM REPEAT;

ANIMALS; ANTENNAPEDIA HOMEODOMAIN PROTEIN; CAENORHABDITIS ELEGANS; CHORDATA, NONVERTEBRATE; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; EMBRYONIC AND FETAL DEVELOPMENT; EVOLUTION; GENES, HELMINTH; GENES, HOMEOBOX; GENES, INSECT; HOMEODOMAIN PROTEINS; HUMANS; MICE; MULTIGENE FAMILY; NUCLEAR PROTEINS; PHYLOGENY; TRANSCRIPTION FACTORS;

ANIMALIA; BRANCHIOSTOMA LANCEOLATUM; CHORDATA; HEXAPODA; NEMATODA;

EID: 0029671437     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (55)

1. AVEROF, M., and M. AKAM, 1995 Hox genes and the diversification of insect and crustacean body plans. Nature 376: 420-423.
2. BACHILLER, D., A. MACIAS, D. DUBOULE and G. MORATA, 1994 Conservation of a functional hierarchy between mammalian and insect Hox/Hom genes. EMBO J. 13: 1930-1941.
3. BARTELS, J. L., M. T. MURTHA and F. H. RUDDLE, 1993 Mutiple Hox/HOM-class homeoboxes in platyhelminthes. Mol. Phylogenet. Evol. 2: 143-151.
4. BÜRGLIN, T. R., 1994 A comprehensive classification of homeobox genes, pp. 27-71 in Guidebook to the Homeobox Genes, edited by D. DUBOULE Oxford University Press, New York.
5. BURGLIN, T. R., and G. RUVKUN, 1993 The Caenorhabditis elegans homeobox gene cluster. Curr. Opin. Gen. Dev. 3: 615-620.
6. BÜRGLIN, T. R., G. RUVKUN, A. COULSON, N. C. HAWTHINS, J. D. MCGHEE et al., 1991 Nematode homeobox cluster. Nature 351: 703.
7. CARROLL, S. B., 1995 Homeotic genes and the evolution of arthropods and chordates Nature 376: 479-485.
8. CARROLL, S. B., S. D. WEATHERBEE and J. A. LANGELAND, 1995 Homeotic genes and the regulation and evolution of insect wing number. Nature 375: 58-61.
9. CARTWRIGHT, P., M. DICK and L. M. BUSS, 1993 HOM/Hox type homeoboxes in the chelicerate Limulus polyphemus. Mol. Phylogenet. Evol. 2: 185-192.
10. CONWAY MORRIS, S., 1993 The fossil record and the early evolution of the Metazoa. Nature 361: 219-225.
11. DEGNAN, B. M , S. M. DEGNAN, A GIUSTI and D E. MORSE, 1995 A hox/hom homeobox gene in sponges. Gene 155: 175-177.
12. DICK, M. H., and L. M. BUSS, 1994 A PCR-based survey of homeobox genes in Ctenodrilus serratus (Annelida: polychaeta). Mol. Phylogenet. Evol. 3: 146-158.
13. DUBOULE, D., 1994 How to make a limb? Science 268: 575-576.
14. DUBOULE, D., and G. MORATA, 1994 Colinearity and functional hierarchy among genes of the homeotic complexes. Trends Genet. 10: 358-364.
15. DUNCAN, I., and E. B. LEWIS, 1982 Genetic control of body segment differentiation in Drosophila, pp. 533-554 in Developmental Order: Its Origin and Regulation, edited by S. S. SUBTELNY, A. R. Liss, New York
16. FELSENSTEIN, J., 1985 Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
17. GARCIA-FERNÀNDEZ, J., and P. W. H. HOLLAND, 1994 Archetypal organization of the amphioxus Hox gene cluster Nature 37: 563-566.
18. GEHRING, W. J., Y. Q. QIAN, M. BILLETER, K. FURUKUBO-TOKUNAGA, A. F. SCHIER et al., 1994 Homeodomain-DNA recognition. Cell 78: 211-223.
19. HAACK, H., and P. GRUSS, 1993 The establishment of marine Hox-1 expression domains during patterning of the limb. Dev Biol. 157: 410-422.
20. HAZELRIGG, T., and T. C KAUFMAN, 1982 Revertants of dominant mutations associated with the Antennapedia gene complex of Drosophila melanogaster: cytology and genetics. Genetics 105: 581-600.
21. HILLIS, D. M., and J. J. BULL, 1993 An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42: 182-192.
22. HOLLAND, P., 1982 Homeobox genes in vertebrate evolution. BioEssays 14: 267-273.
23. HUGHES, A. L., and M. NEI, 1990 Evolutionary relationships of class II major-histocompatibility-complex genes in mammals. Mol. Biol. Evol. 7: 491-514.
24. HUGHES, A. L , and M. NEI, 1993 Evolutionary relationships of the classes of major histocompatibility complex genes. Immunogenetics 37: 337-346.
25. KAPPEN, C., and F. H. RUDDLE, 1993 Evolution of a regulatory gene family: HOM/HOX genes. Curr. Opin. Gen. Dev. 3: 931-938.
26. KAPPEN, C., K. SCHUGHART and F. H. RUDDLE, 1989 Two steps in the evolution of Antennapetia-class vertebrate homeobox genes. Proc. Nad. Acad Sci. USA 86: 5459-5463.
27. KAPPEN, C., K. SCHUGHART and F. H. RUDDLE, 1993 Early evolutionary origin of major homeodomain sequence classes. Genomics 18: 54-70.
28. KNOLL, A. H., 1992 The early evolution of eukaryotes: a geological perspective. Science 256: 622-627.
29. KRUMLAUF, R., 1994 Hox genes in vertebrate development. Cell 78: 191-201.
30. KUMAR, S., K. TAMURA and M. NEI, 1993 MEGA: Molecular Evolutionary Genetics Analysis, version 1.01. Pennsylvania State University, University Park, PA.
31. LAWRENCE, P., and G. MORATA, 1994 Homeobox genes: their function in Drosophila segmentation and pattern formation. Cell 78: 181-189
32. LEWIS, E. B., 1978 A gene complex controlling segmentation in Drosophila. Nature 276: 565-570.
33. MCGINNIS, W., and R. KRUMLAUF, 1992 Homeobox genes and axial patterning. Cell 66: 283-302.
34. MORGAN, B A., and C. J. TABIN, 1993 The role of homeobox genes in limb development. Curr. Opin. Gen. Dev. 3: 668-674.
35. MURTHA, M. T., J. F. LECKMAN and F. H. RUDDLE, 1991 Detection of homeobox genes in development and evolution. Proc. Natl. Acad. USA 88: 10711-10715.
36. NAITO, M., H. ISHIGI RO, T. FUJISAWA and Y. KUROSAWA, 1993 Presence of eight distinct homeobox-containing genes in cnidarians. FEBS Lett. 333: 271-274.
37. NEI, M., 1991 Relative efficiencies of different tree-making methods for molecular data, pp. 90-128 in Phylogenetic Analysis of DNA Sequences, edited by M. M. MIYAMOTO and J. CRACRAFT. Oxford University Press, New York.
38. NEI, M., N TAKEZAKI and T. SITNIKOVA, 1995 Assessing molecular phytogenies. Science 267: 253-255.
39. PENDLETON, J. W., B. K. NAGAI, M. T. MURTHA and F. H. RUDDLE, 1993 Expansion of the Hox gene family and the evolution of chordates. Proc. Natl. Acad. Sci. USA 90: 6300-6304.
40. PETERSON, R. L., T PAPENBROCK, M. M. DAVDA and A. AWGULEWITSCH, 1994 The mirine Hoxc cluster contains five neighboring AbdB-related Hox genes that show unique spatially coordinated expression in posterior embryonic subregions. Mech. Dev. 47: 253-260.
41. H gene of the chicken with a high incidence in the D region. Cell 59: 171-183.
42. RUDDLE, F. H , J L BARTELS, K. L. BENTLEY, C. KAPPEN, M. T. MURTHA et al., 1994 Evolution of HOX genes. Annu. Rev. Genet. 28: 423-442.
43. RUSSO, C. A M., N. TAKEZAKI, and M. NEI, 1996 Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny. Mol. Biol. Evol. (in press).
44. RZHETSKY, A., and M, NEI, 1992 A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9: 945-967.
45. SAITOU, N., and M. NEI, 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
46. SALSER, S. J., and C. KENYON, 1994 Patterning C. elegans: homeotic cluster genes, cell fates and cell migrations. Trends Genet. 10: 159-164.
47. SCHUBERT, F. R., K. NIESELT-STRUWE and P. GRUSS, 1993 The Antennapedia-type homeobox genes have evolved from three precursors separated early in metazoan evolution. Proc. Natl. Acad. Sci. USA 90: 143-147.
48. SCHUGHART, K., C. KAPPEN and F. H. RUDDLE, 1989 Duplication of large genomic regions during the evolution of vertebrate homeobox genes. Proc. Natl. Acad. Sci. USA 86: 7067-7071.
49. SITNIKOVA, T., A. RZHETSKY and M. NEI, 1995 Interior-branch and bootstrap tests of phylogenetic trees. Mol. Biol. Evol. 12: 319-333.
50. SNOW, P., and L. W. BUSS, 1994 HOM/Hox-Type homeoboxes from Stylaria lacustris (Annelida: oligochaeta). Mol. Phylogenet. Evol. 3: 360-364.
51. STRUHI, G., 1984 Splitting the bithorax complex of Drosophila. Nature 308: 454-457.
52. TIONG, S. Y., J. R. WHITTLE and M. C. GRIBBIN, 1987 Chromosomal continuity in the abdominal region of the bithorax complex of Drosophila is not essential for its contribution to metameric identity. Development 101: 135-142.
53. WANG, B. B., M. M. MULLER-IMMERGLUCK, J. AUSTIN, N. T. ROBINSON, A. CHISHOLM et al., 1993 A homeotic gene cluster patterns the anterioposterior body axis of C. elegans. Cell 74: 29-42.
54. WARREN, R. W., L. NAGY, J SELEGUE, J. GATES and S. CARROLL, 1994 Evolution of homeotic gene regulation and the function in flies and butterflies, Nature 372: 458-461.
55. ZHARKIKH, A., and W.-H. LI, 1992 Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: I. Four taxa with a molecular clock. Mol. Biol. Evol. 9: 1119-1147.