Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes

International Journal of Systematic Bacteriology

Volumn 46, Issue 2, 1996, Pages 502-505

  Yoon, Jung Hoon ^a,b   Kim, Hongik ^a   Kim, Sam Bong ^c   Kim, Hong Joong ^a,d   Kim, Won Yong ^a   Lee, Sung Taik ^b   Goodfellow, Michael ^c   Park, Yong Ha ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^c NEWCASTLE UNIVERSITY   (United Kingdom)

^d Daesung Microbiology Institute Co   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; DNA FRAGMENT; RIBOSOME RNA;

ACTINOBACTERIA; ARTICLE; BACTERIAL GENETICS; BACTERIUM IDENTIFICATION; DNA DETERMINATION; GENOME; NONHUMAN; PRIORITY JOURNAL; RNA ANALYSIS; SPECIES DIFFERENCE;

EID: 0029924088     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-46-2-502     Document Type: Article

References (27)

1. Barrowcliff, D. E., and P. G. Arblaster. 1968. Farmer's lung: a study of an early acute fatal case. Thorax 23:490-500.
2. Barsotti, O., D. Decoret, G. Benay, A. Carlotti, J. Freney, V. Guerin-Faublee, and J.-J. Morrier. 1994. rRNA gene restriction patterns as possible taxonomic tools for the genus Actinomyces. Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. 1 Orig. 281:433-441.
3. Baylis, H. A., and M. J. Bibb. 1988. Organisation of the ribosomal RNA genes in Streptomyces coelicolor A3(2). Mol. Gen. Genet. 211:191-196.
4. Bercovier, H., O. Kafric, and S. Sala. 1986. Mycobacteria possess a surprisingly small number of ribosomal RNA genes in relation to the size of their genome. Biochem. Biophys. Res. Commun. 136:1136-1141.
5. Bowden, G., J. Johnson, and C. Schachtele. 1993. Characterization of Actinomyces with genomic DNA fragments and rRNA gene probes. J. Dent. Res. 72:1171-1179.
6. Doering-Saad, C., P. Kämpfer, S. Manulis, G. Kritzman, J. Schneider, J. Zakrzewska-Czerwinska, H. Schrempf, and I. Barash. 1992. Diversity among Streptomyces strains causing potato scab. Appl. Environ. Microbiol. 58:3932-3940.
7. Greene, J. G., M. W. Treuhaft, and R. M. Arnsell. 1981. Hypersensitivity pneumonitis due to Saccharomonospora viridis diagnosed by inhalation challenge. Ann. Allergy 47:449-452.
8. Greiner-Mai, E., F. Korn-Wendisch, and H. J. Kutzner. 1988. Taxonomic revision of the genus Saccharomonospora and description of Saccharomonospora glauca sp. nov. Int. J. Syst. Bacteriol. 38:398-405.
9. Greiner-Mai, E., R. M. Kroppenstedt, F. Korn-Wendisch, and H. J. Kutzner. 1987. Morphological and biochemical characterization and emended descriptions of thermophilic actinomycetes species. Syst. Appl. Microbiol. 9:97-109.
10. Grimont, F., and P. A. D. Grimont. 1986. Ribosomal ribonucleic acid gene restriction patterns as potential taxonomic tools. Ann. Inst. Pasteur Microbiol. 137B:165-175.
11. Hunter, I. S. 1985. Gene cloning in Streptomyces, p. 32. In D. M. Glover (ed.), DNA cloning, vol. 2. IRL Press, Oxford.
12. Kalakoutskii, L. V. 1964. A new species of the genus Micropolyspora - Micropolyspora caesia n. sp. Mikrobiologiya 33:765-768.
13. Kauppinen, J., J. Pelkonen, and M.-L. Katila. 1994. RFLP analysis of Mycobacterium malmoense strains using ribosomal RNA gene probes: an additional tool to examine intraspecies variation. J. Microbiol. Methods 19:261-267.
14. Kim, E., H. Kim, S.-P. Hong, K. H. Kang, Y. H. Kho, and Y.-H. Park. 1993. Gene organization and primary structure of a ribosomal RNA gene cluster from Streptomyces griseus subsp. griseus. Gene 132:21-31.
15. Kim, S.-B. 1995. Polyphasic taxonomic studies on the genus Saccharomonospora and related taxa. Ph.D. thesis. University of Newcastle upon Tyne, Newcastle upon Tyne, United Kingdom.
16. Kim, S.-B., J.-H. Yoon, H. Kim, S. T. Lie, Y.-H. Park, and M. Goodfellow. 1995. A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences. Int. J. Syst. Bacteriol. 45:351-356.
17. Kroppenstedt, R. M. 1985. Fatty acid and menaquinone analysis of actinomycetes and related organisms, p. 173-189. In M. Goodfellow and D. E. Minnikin (ed.), Chemical methods in bacterial systematics. Academic Press, London.
18. Kurup, V. P. 1984. Thermophilic actinomycetes, their role in hypersensitivity pneumonitis, p. 145-159. In L. Ortiz-Ortiz, L. F. Bojalil, and V. Yakoleff (ed.), Biological, biochemical and biomedical aspects of actinomycetes. Academic Press, Orlando, Fla.
19. Lasker, B. A., J. M. Brown, and M. M. McNeil. 1992. Identification and epidemiological typing of chemical and environmental isolates of the genus Rhodococcus with use of a digoxigenin-labeled rDNA probe. Clin. Infect. Dis. 15:223-233.
20. Lechevalier, M. P., and H. A. Lechevalier. 1970. A critical evaluation of the genera of aerobic actinomycetes, p. 393-405. In H. Prauser (ed.), The Actinomycetales. Gustav Fischer Verlag, Jena, Germany.
21. Nonomura, H., and Y. Ohara. 1971. Distribution of actinomycetes in soil. X. New genus and species of monosporic actinomycetes. J. Ferment. Technol. 49: 895-903.
22. Richet, H. M., P. C. Craven, J. M. Brown, B. A. Lasker, C. Cox, M. M. McNeil, A. D. Tice, W. R. Janis, and O. C. Tablan. 1991. A cluster of Rhodococcus (Gordona) bronchialis sternal wound infections after coronaryartery bypass surgery. N. Engl. J. Med. 324:104-109.
23. Runmao, H. 1987. Saccharomonospora azurea sp. nov., a new species from soil. Int. J. Syst. Bacteriol. 37:60-61.
24. Runmao, H., C. Lin, and W. Guizhen. 1988. Saccharomonospora cyanea sp. nov. Int. J. Syst. Bacteriol. 38:444-446.
25. Skerman, V. B. D., V. McGowan, and P. H. A. Sneath (ed.). 1980. Approved lists of bacterial names. Int. J. Syst. Bacteriol. 30:225-420.
26. Soto, A., D. G. Pitcher, and F. Soriano. 1991. A numerical analysis of ribosomal RNA gene patterns for typing clinical isolates of Corynebacterium group D2. Epidemiol. Infect. 107:263-272.
27. Towner, K. J., and A. Cockayne. 1993. Molecular methods for microbial identification and typing. Chapman and Hall, London.