Phosphorylation of histone H3 during transcriptional activation depends on promoter structure

Genes and Development

Volumn 17, Issue 1, 2003, Pages 43-48

  Labrador, Mariano ^a   Corces, Victor G ^a  

^a JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

Acetylation; Chromatin; Histone; Phosphorylation; Transcription

Indexed keywords

HEAT SHOCK PROTEIN 70; HISTONE H3; LYSINE; SERINE; TRANSPOSASE;

ACETYLATION; ANIMAL CELL; ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; DROSOPHILA; GENE ACTIVATION; GENE STRUCTURE; GENETIC TRANSCRIPTION; NONHUMAN; POLYTENE CHROMOSOME; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN MODIFICATION; PROTEIN PHOSPHORYLATION; REPORTER GENE; TRANSCRIPTION INITIATION; TRANSGENE;

ACETYLATION; ANIMALS; ANIMALS, GENETICALLY MODIFIED; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; HISTONES; HSP70 HEAT-SHOCK PROTEINS; NUCLEOSOMES; PHOSPHORYLATION; PROMOTER REGIONS (GENETICS); PROTEIN PROCESSING, POST-TRANSLATIONAL; SACCHAROMYCES CEREVISIAE PROTEINS; TATA BOX; TATA-BOX BINDING PROTEIN; TRANS-ACTIVATION (GENETICS); TRANSCRIPTION FACTORS; TRANSGENES; TRANSPOSASES;

ANIMALIA;

EID: 0037229898     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.1021403     Document Type: Article

References (41)

1. Ahmad, K. and Henikoff, S. 2002a. Histone H3 variants specify modes of chromatin assembly. Proc. Natl. Acad. Sci. 12: 12.
2. -. 2002b. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol. Cell 9: 1191-1200.
3. Aoyagi, N. and Wassarman, D.A. 2000. Genes encoding Drosophila melanogaster RNA polymerase II general transcription factors: Diversity in TFIIA and TFIID components contributes to gene-specific transcriptional regulation. J. Cell Biol. 150: 45-50.
4. Arkhipova, I.R., Mazo, A.M., Cherkasova, V.A., Gorelova, T.V., Schuppe, N.G., and Llyin, Y.V. 1986. The steps of reverse transcription of Drosophila mobile dispersed genetic elements and U3-R-U5 structure of their LTRs. Cell 44: 555-563.
5. Bannister, A.J., Zegerman, P., Partridge, J.F., Miska, E.A., Thomas, J.O., Allshire, R.C., and Kouzarides, T. 2001. Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain. Nature 410: 120-124.
6. Berger, S.L. 2002. Histone modifications in transcriptional regulation. Curr. Opin. Genet. Dev. 12: 142-148.
7. Bhaumik, S.R. and Green, M.R. 2001. SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes & Dev. 15: 1935-1945.
8. Brand, A.H. and Perrimon, N. 1993. Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development 118: 401-415.
9. Cheung, P., Tanner, K.G., Cheung, W.L., Sassone-Corsi, P., Denu, J.M., and Allis, C.D. 2000. Synergistic coupling of histone H3 phosphorylation and acetylation in response to epidermal growth factor stimulation. Mol. Cell 5: 905-915.
10. II105 in ovarian development. Science 293: 2084-2087.
11. Fry, C.J. and Peterson, C.L. 2002. Transcription. Unlocking the gates to gene expression. Science 295: 1847-1848.
12. Granok, H., Leibovitch, B.A., Shaffer, C.D., and Elgin, S.C. 1995. Chromatin. Ga-ga over GAGA factor. Curr. Biol. 5: 238-241.
13. Hansen, S.K., Takada, S., Jacobson, R.H., Lis, J.T., and Tjian, R. 1997. Transcription properties of a cell type-specific TATA-binding protein, TRF. Cell 91: 71-83.
14. Harrison, D.A., Gdula, D.A., Coyne, R.S., and Corces, V.G. 1993. A leucine zipper domain of the suppressor of Hairy-wing protein mediates its repressive effect on enhancer function. Genes & Dev. 7: 1966-1978.
15. II250 double bromodomain module. Science 288: 1422-1425.
16. Jenuwein, T. and Allis, C.D. 2001. Translating the histone code. Science 293: 1074-1080.
17. Larschan, E. and Winston, F. 2001. The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4. Genes & Dev. 15:1946-1956.
18. Lee, H., Kraus, K.W., Wolfner, M.F., and Lis, J.T. 1992. DNA sequence requirements for generating paused polymerase at the start of hsp70. Genes & Dev. 6: 284-295.
19. Li, J., Lin, Q., Yoon, H.G., Huang, Z.Q., Strahl, B.D., Allis, C.D., and Wong, J. 2002. Involvement of histone methylation and phosphorylation in regulation of transcription by thyroid hormone receptor. Mol. Cell. Biol. 22: 5688-5697.
20. Lo, W.S., Trievel, R.C., Rojas, J.R., Duggan, L., Hsu, J.Y., Allis, C.D., Marmorstein, R., and Berger, S.L. 2000. Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine 14. Mol. Cell 5: 917-926.
21. Lo, W.-S., Duggan, L., Tolga Emre, N.C., Belotserkovskya, R., Lane, W.S., Shiekhattar, R., and Berger, S.L. 2001. Snf1 - A histone kinase that works in concert with the histone acetyltransferase Gcn5 to regulate transcription. Science 293: 1142-1146.
22. Nowak, S.J. and Corces, V.G. 2000. Phosphorylation of histone H3 correlates with transcriptionally active loci. Genes & Dev. 14: 3003-3013.
23. O'Hare, K. and Rubin, G.M. 1983. Structures of P transposable elements and their sites of insertion and excision in the Drosophila melanogaster genome. Cell 34: 25-35.
24. Patikoglou, G.A., Kim, J.L., Sun, L., Yang, S.H., Kodadek, T., and Burley, S.K. 1999. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes & Dev. 13: 3217-3230.
25. Pile, L.A. and Wassarman, D.A. 2000. Chromosomal localization links the SIN3-RPD3 complex to the regulation of chromatin condensation, histone acetylation and gene expression. EMBO J. 19: 6131-6140.
26. Praz, V., Perier, R., Bonnard, C., and Bucher, P. 2002. The eukaryotic promoter database, EPD: New entry types and links to gene expression data. Nucleic Acids Res. 30: 322-324.
27. Rabenstein, M.D., Zhou, S., Lis, J.T., and Tjian, R. 1999. TATA boxbinding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family. Proc. Natl. Acad. Sci. 96: 4791-4796.
28. Rea, S., Eisenhaber, F., O'Carroll, D., Strahl, B.D., Sun, Z.W., Schmid, M., Opravil, S., Mechtler, K., Ponting, C.P., Allis, C.D., et al. 2000. Regulation of chromatin structure by site-specific histone H3 methyltransferases. Nature 406: 593-599.
29. Robertson, H.M., Preston, C.R., Phillis, R.W., Johnson-Schlitz, D.M., Benz, W.K., and Engels, W.R. 1988. A stable genomic source of P element transposase in Drosophila melanogaster. Genetics 118:461-470.
30. Rorth, P. 1998. Gal4 in the Drosophila female germline. Mech. Dev. 78: 113-118.
31. Roth, S.Y., Denu, J.M., and Allis, C.D. 2001. Histone acetyltransferases. Annu. Rev. Biochem. 70:81-120.
32. Sass, H. 1982. RNA polymerase B in polytene chromosomes: Immunofluorescent and autoradiographic analysis during stimulated and repressed RNA synthesis. Cell 28: 269-278.
33. Song, S.U., Kurkulos, M., Boeke, J.D., and Corces, V.G. 1997. Infection of the germ line by retroviral particles produced in the follicle cells: A possible mechanism for the mobilization of the gypsy retroelement of Drosophila. Development 124: 2789-2798.
34. Strahl, B.D. and Allis, C.D. 2000. The language of covalent histone modifications. Nature 403: 41-45.
35. Strelkov, I.S. and Davie, J.R. 2002. Ser-10 phosphorylation of histone H3 and immediate early gene expression in oncogene-transformed mouse fibroblasts. Cancer Res. 62: 75-78.
36. Sun, Z.W. and Allis, C.D. 2002. Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast. Nature 418: 104-108.
37. Thomson, S., Clayton, A.L., and Mahadevan, L.C. 2001. Independent dynamic regulation of histone phosphorylation and acetylation during immediate-early gene induction. Mol. Cell 8: 1231-1241.
38. Turner, B.M. 2000. Histone acetylation and an epigenetic code. Bioessays 22: 836-845.
39. Verrijzer, C.P. 2001. Transcription factor IID - Not so basal after all. Science 293: 2010-2011.
40. Weeks, J.R., Hardin, S.E., Shen, J., Lee, J.M., and Greenleaf, A.L. 1993. Locus-specific variation in phosphorylation state of RNA polymerase II in vivo: Correlations with gene activity and transcript processing. Genes & Dev. 7: 2329-2344.
41. Wu, C.H., Madabusi, L., Nishioka, H., Emanuel, P., Sypes, M., Arkhipova, I., and Gilmour, D.S. 2001. Analysis of core promoter sequences located downstream from the TATA element in the hsp70 promoter from Drosophila melanogaster. Mol. Cell Biol. 21: 1593-1602.