메뉴 건너뛰기




Volumn 30, Issue 24, 2002, Pages 5407-5415

A directional nucleation-zipping mechanism for triple helix formation

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CYTOSINE; DNA; DNA B; DNA BASE; DOUBLE STRANDED DNA; GUANINE; OLIGONUCLEOTIDE; PYRIMIDINE; THYMINE;

EID: 0037115873     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkf675     Document Type: Review
Times cited : (36)

References (32)
  • 1
    • 0023652076 scopus 로고
    • Sequence-specific recognition, photocrosslinking and cleavage of the DNA double helix by an oligo-[α]-thymidylate covalently linked to an azidoproflavine derivative
    • Le Doan,T., Perrouault,L., Praseuth,D., Habhoud,N., Decout,J.L., Thuong,N.T., Lhomme,J. and Hélène,C. (1987) Sequence-specific recognition, photocrosslinking and cleavage of the DNA double helix by an oligo-[α]-thymidylate covalently linked to an azidoproflavine derivative. Nucleic Acids Res., 15, 7749-7760.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 7749-7760
    • Le Doan, T.1    Perrouault, L.2    Praseuth, D.3    Habhoud, N.4    Decout, J.L.5    Thuong, N.T.6    Lhomme, J.7    Hélène, C.8
  • 2
    • 0023619361 scopus 로고
    • Sequence-specific cleavage of double helical DNA by triple helix formation
    • Moser,H. and Dervan,P.B. (1987) Sequence-specific cleavage of double helical DNA by triple helix formation. Science, 238, 645-650.
    • (1987) Science , vol.238 , pp. 645-650
    • Moser, H.1    Dervan, P.B.2
  • 3
    • 0029873110 scopus 로고    scopus 로고
    • Prospects for the therapeutic use of antigene oligonucleotides
    • Maher,L.J.,III (1996) Prospects for the therapeutic use of antigene oligonucleotides. Cancer Invest., 14, 66-82.
    • (1996) Cancer Invest. , vol.14 , pp. 66-82
    • Maher L.J. III1
  • 5
    • 0030902414 scopus 로고    scopus 로고
    • Triplex DNA: Fundamentals, advances, and potential applications for gene therapy
    • Chan,P.P. and Glazer,P.M. (1997) Triplex DNA: fundamentals, advances, and potential applications for gene therapy. J. Mol. Med., 75, 267-282.
    • (1997) J. Mol. Med. , vol.75 , pp. 267-282
    • Chan, P.P.1    Glazer, P.M.2
  • 6
    • 0032750623 scopus 로고    scopus 로고
    • Triple helix formation and the antigene strategy for sequence-specific control of gene expression
    • 1489
    • Praseuth,D., Guieysse-Peugeot,A.L. and Hélène,C. (1999) Triple helix formation and the antigene strategy for sequence-specific control of gene expression. Biochim. Biophys. Acta, 1489, 181-206.
    • (1999) Biochim. Biophys. Acta , pp. 181-206
    • Praseuth, D.1    Guieysse-Peugeot, A.L.2    Hélène, C.3
  • 7
    • 0027197574 scopus 로고
    • Oligonucleotide-directed triple-helix formation
    • Sun,J.S. and Hélène,C. (1993) Oligonucleotide-directed triple-helix formation. Curr. Opin. Struct. Biol., 3, 345-356.
    • (1993) Curr. Opin. Struct. Biol. , vol.3 , pp. 345-356
    • Sun, J.S.1    Hélène, C.2
  • 8
    • 0028781381 scopus 로고
    • DNA triplexes: Solution structures, hydration sites, energetics, interactions, and function
    • Radhakrishnan,I. and Patel,D.J. (1994) DNA triplexes: solution structures, hydration sites, energetics, interactions, and function. Biochemistry, 33, 11405-11416.
    • (1994) Biochemistry , vol.33 , pp. 11405-11416
    • Radhakrishnan, I.1    Patel, D.J.2
  • 10
    • 0001635854 scopus 로고    scopus 로고
    • Thermodynamics of oligonucleotide triple helices
    • Plum,G.E. (1997) Thermodynamics of oligonucleotide triple helices. Biopolymers, 44, 241-256.
    • (1997) Biopolymers , vol.44 , pp. 241-256
    • Plum, G.E.1
  • 12
    • 0025166762 scopus 로고
    • Kinetic analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA
    • Maher,L.J.,III, Dervan,P.B. and Wold,B.J. (1990) Kinetic analysis of oligodeoxyribonucleotide-directed triple-helix formation on DNA. Biochemistry, 29, 8820-8826.
    • (1990) Biochemistry , vol.29 , pp. 8820-8826
    • Maher L.J. III1    Dervan, P.B.2    Wold, B.J.3
  • 14
    • 0027331064 scopus 로고
    • Thermodynamic and kinetic analyses of DNA triplex formation: Application of filter-binding assay
    • Sarai,A., Sugiura,S., Torigoe,H. and Shindo,H. (1993) Thermodynamic and kinetic analyses of DNA triplex formation: application of filter-binding assay. J. Biomol. Struct. Dyn., 11, 245-252.
    • (1993) J. Biomol. Struct. Dyn. , vol.11 , pp. 245-252
    • Sarai, A.1    Sugiura, S.2    Torigoe, H.3    Shindo, H.4
  • 15
    • 0028558883 scopus 로고
    • Direct measurement of thermodynamic and kinetic parameters of DNA triple helix formation by fluorescence spectroscopy
    • Yang,M., Ghosh,S.S. and Millar,D.P. (1994) Direct measurement of thermodynamic and kinetic parameters of DNA triple helix formation by fluorescence spectroscopy. Biochemistry, 33, 15329-15337.
    • (1994) Biochemistry , vol.33 , pp. 15329-15337
    • Yang, M.1    Ghosh, S.S.2    Millar, D.P.3
  • 16
    • 0029050973 scopus 로고
    • Detection and kinetic studies of triplex formation by oligodeoxynucleotides using real-time biomolecular interaction analysis (BIA)
    • Bates,P.J., Dosanjh,H.S., Kumar,S., Jenkins,T.C., Laughton,C.A. and Neidle,S. (1995) Detection and kinetic studies of triplex formation by oligodeoxynucleotides using real-time biomolecular interaction analysis (BIA). Nucleic Acids Res., 23, 3627-3632.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3627-3632
    • Bates, P.J.1    Dosanjh, H.S.2    Kumar, S.3    Jenkins, T.C.4    Laughton, C.A.5    Neidle, S.6
  • 17
    • 0030561216 scopus 로고    scopus 로고
    • Kinetic footprinting of DNA triplex formation
    • Protozanova,E. and Macgregor,R.B.,Jr (1996) Kinetic footprinting of DNA triplex formation. Anal. Biochem., 243, 92-99.
    • (1996) Anal. Biochem. , vol.243 , pp. 92-99
    • Protozanova, E.1    Macgregor R.B., Jr.2
  • 18
    • 0031149643 scopus 로고    scopus 로고
    • Kinetic analysis of sequence-specific alkylation of DNA by pyrimidine oligodeoxyribonucleotide-directed triple-helix formation
    • Taylor,M.J. and Dervan,P.B. (1997) Kinetic analysis of sequence-specific alkylation of DNA by pyrimidine oligodeoxyribonucleotide-directed triple-helix formation. Bioconjug. Chem., 8, 354-364.
    • (1997) Bioconjug. Chem. , vol.8 , pp. 354-364
    • Taylor, M.J.1    Dervan, P.B.2
  • 19
    • 0032573199 scopus 로고    scopus 로고
    • Thermodynamic, kinetic, and conformational properties of a parallel intermolecular DNA triplex containing 5′ and 3′ junctions
    • Asensio,J.L., Dosanjh,H.S., Jenkins,T.C. and Lane,A.N. (1998) Thermodynamic, kinetic, and conformational properties of a parallel intermolecular DNA triplex containing 5′ and 3′ junctions. Biochemistry, 37, 15188-15198.
    • (1998) Biochemistry , vol.37 , pp. 15188-15198
    • Asensio, J.L.1    Dosanjh, H.S.2    Jenkins, T.C.3    Lane, A.N.4
  • 20
    • 0015223587 scopus 로고
    • Co-operative non-enzymic base recognition. 3. Kinetics of the helix-coil transition of the oligoribouridylic-oligoriboadenylic acid system and of oligoriboadenylic acid alone at acidic pH
    • Pörschke,D. and Eigen,M. (1971) Co-operative non-enzymic base recognition. 3. Kinetics of the helix-coil transition of the oligoribouridylic-oligoriboadenylic acid system and of oligoriboadenylic acid alone at acidic pH. J. Mol. Biol., 62, 361-381.
    • (1971) J. Mol. Biol. , vol.62 , pp. 361-381
    • Pörschke, D.1    Eigen, M.2
  • 21
    • 0015223584 scopus 로고
    • Relaxation kinetics of dimer formation by self complementary oligonucleotides
    • Craig,M.E., Crothers,D.M. and Doty,P. (1971) Relaxation kinetics of dimer formation by self complementary oligonucleotides. J. Mol. Biol., 62, 383-401.
    • (1971) J. Mol. Biol. , vol.62 , pp. 383-401
    • Craig, M.E.1    Crothers, D.M.2    Doty, P.3
  • 22
    • 0013936075 scopus 로고
    • Polynucleotides. VII. Spectrophotometric study of the kinetics of formation of the two-stranded helical complex resulting from the interaction of polyriboadenylate and polyribouridylate
    • Blake,R.D. and Fresco,J.R. (1966) Polynucleotides. VII. Spectrophotometric study of the kinetics of formation of the two-stranded helical complex resulting from the interaction of polyriboadenylate and polyribouridylate. J. Mol. Biol., 19, 145-160.
    • (1966) J. Mol. Biol. , vol.19 , pp. 145-160
    • Blake, R.D.1    Fresco, J.R.2
  • 23
    • 0014202975 scopus 로고
    • Polynucleotides. VIII. A spectral approach to the equilibria between polyriboadenylate and polyribouridylate and their complexes
    • Blake,R.D., Massoulié,J. and Fresco,J.R. (1967) Polynucleotides. VIII. A spectral approach to the equilibria between polyriboadenylate and polyribouridylate and their complexes. J. Mol. Biol., 30, 291-308.
    • (1967) J. Mol. Biol. , vol.30 , pp. 291-308
    • Blake, R.D.1    Massoulié, J.2    Fresco, J.R.3
  • 24
    • 0014422885 scopus 로고
    • Polynucleotides. IX. Temperature dependence of kinetics of complex formation in equimolar mixtures of polyriboadenylate and polyribouridylate
    • Blake,R.D., Klotz,L.C. and Fesco,J.R. (1968) Polynucleotides. IX. Temperature dependence of kinetics of complex formation in equimolar mixtures of polyriboadenylate and polyribouridylate. J. Am. Chem. Soc., 90, 3556-3562.
    • (1968) J. Am. Chem. Soc. , vol.90 , pp. 3556-3562
    • Blake, R.D.1    Klotz, L.C.2    Fesco, J.R.3
  • 25
    • 0014725117 scopus 로고
    • Oligonucleotide interactions. III. Conformational differences between deoxy- and ribodinucleoside phosphates
    • Cantor,C.R., Warshaw,M.M. and Shapiro,H. (1970) Oligonucleotide interactions. III. Conformational differences between deoxy- and ribodinucleoside phosphates. Biopolymers, 9, 1059-1077.
    • (1970) Biopolymers , vol.9 , pp. 1059-1077
    • Cantor, C.R.1    Warshaw, M.M.2    Shapiro, H.3
  • 26
    • 0028094093 scopus 로고
    • Thermodynamics of DNA triplex formation in oligomers with and without cytosine bases: Influence of buffer species, pH, and sequence
    • Wilson,W.D., Hopkins,H.P., Mizan,S., Hamilton,D.D. and Zon,G. (1994) Thermodynamics of DNA triplex formation in oligomers with and without cytosine bases: influence of buffer species, pH, and sequence. J. Am. Chem Soc., 116, 3607-3608.
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 3607-3608
    • Wilson, W.D.1    Hopkins, H.P.2    Mizan, S.3    Hamilton, D.D.4    Zon, G.5
  • 27
    • 0031670461 scopus 로고    scopus 로고
    • Enthalpy and heat capacity changes for the proton dissociation of various buffer components in 0.1 M potassium chloride
    • Fukada,H. and Takahashi,K. (1998) Enthalpy and heat capacity changes for the proton dissociation of various buffer components in 0.1 M potassium chloride. Proteins, 33, 159-166.
    • (1998) Proteins , vol.33 , pp. 159-166
    • Fukada, H.1    Takahashi, K.2
  • 28
    • 0023406843 scopus 로고
    • Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves
    • Marky,L.A. and Breslauer,K.J. (1987) Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves. Biopolymers, 26, 1601-1620.
    • (1987) Biopolymers , vol.26 , pp. 1601-1620
    • Marky, L.A.1    Breslauer, K.J.2
  • 29
    • 0033955735 scopus 로고    scopus 로고
    • Advances in surface plasmon resonance biosensor analysis
    • Rich,R.L. and Myszka,D.G. (2000) Advances in surface plasmon resonance biosensor analysis. Curr. Opin. Biotechnol., 11, 54-61.
    • (2000) Curr. Opin. Biotechnol. , vol.11 , pp. 54-61
    • Rich, R.L.1    Myszka, D.G.2
  • 30
    • 0027971991 scopus 로고
    • Oligodeoxyribonucleotide length and sequence effects on intermolecular purine-purine-pyrimidine triple-helix formation
    • Cheng,A.J. and Van Dyke,M.W. (1994) Oligodeoxyribonucleotide length and sequence effects on intermolecular purine-purine-pyrimidine triple-helix formation. Nucleic Acids Res., 22, 4742-4747.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4742-4747
    • Cheng, A.J.1    Van Dyke, M.W.2
  • 31
    • 0032564312 scopus 로고    scopus 로고
    • Triple helix formation by (G,A)-containing oligonucleotides: Asymmetric sequence effect
    • Arimondo,P., Barcelo,F., Sun,J.S., Maurizot,J.C., Garestier,T. and Hélène,C. (1998) Triple helix formation by (G,A)-containing oligonucleotides: asymmetric sequence effect. Biochemistry, 37, 16627-16635.
    • (1998) Biochemistry , vol.37 , pp. 16627-16635
    • Arimondo, P.1    Barcelo, F.2    Sun, J.S.3    Maurizot, J.C.4    Garestier, T.5    Hélène, C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.